BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg317819
Length=240
Score E
Sequences producing significant alignments: (Bits) Value
AT3G10195.1 | Symbols: | Putative membrane lipoprotein | chr3:... 327 2e-89
> AT3G10195.1 | Symbols: | Putative membrane lipoprotein | chr3:3156551-3157011
REVERSE LENGTH=360
Length=360
Score = 327 bits (177), Expect = 2e-89
Identities = 225/247 (91%), Gaps = 8/247 (3%)
Strand=Plus/Plus
Query 1 ATGGAGAAAATTTCAGCATTCTTCGTCATTCTCTTCCTTGTCTCGTCGTGCATGGTAACA 60
||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct 36 ATGGAGAAAATTTCAGCATTCTTCGTCATTCTCTTCCTTGTCTCGTCGTGCTTGGTGACA 95
Query 61 ATGAGTGTTGGAGATATATGTCAAACGGACAGAGATTGTGTGGAGATTGGGATTCCAAGA 120
||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 96 ATGAGTGTTGGAGATATATGTCAAACGGATAGAGATTGTGTTGAGATTGGGATTCCAAGA 155
Query 121 TGTAAGAGAACAGGAAAGATGCCGATTTGTTACAACGGATATTGTAGCTGT-T-T---C- 174
||||||||||||||||||||||||||||||||||||||||||||| | ||| | | |
Sbjct 156 TGTAAGAGAACAGGAAAGATGCCGATTTGTTACAACGGATATTGTTGTTGTATCTGTTCT 215
Query 175 GCTAAAAGACCTCCTGCTTCCACTACTCGGAA-CTCTCCTTCTTCATCAACCACCAAATT 233
|||||||||| ||||||||| |||||||| || | |||||||| |||||||| | |||||
Sbjct 216 GCTAAAAGACTTCCTGCTTCTACTACTCGAAAAC-CTCCTTCTCCATCAACCTCAAAATT 274
Query 234 CGTTTGA 240
|| |||
Sbjct 275 AGTCTGA 281
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 10857833784
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5