BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg317829
Length=1407
Score E
Sequences producing significant alignments: (Bits) Value
AT5G07630.1 | Symbols: | lipid transporters | chr5:2410703-241... 787 0.0
> AT5G07630.1 | Symbols: | lipid transporters | chr5:2410703-2414711
FORWARD LENGTH=2024
Length=2024
Score = 787 bits (426), Expect = 0.0
Identities = 640/740 (86%), Gaps = 27/740 (4%)
Strand=Plus/Plus
Query 6 GCTCTACGCCGTCCAGTTCCATCTTTTTGTTACCTGCGTCTTGTTTCTCAGCCGGGAGGG 65
||||||||| |||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 405 GCTCTACGCTATCCAGTTCCATCTTTTTGTTACTTGTGTCTTGTTTCTCAGCCGGGAGGG 464
Query 66 ATTTCGGCGCGCTTGCTTGCGGGCTAACATCAAA----A--G---T-AGT-AG-TG---A 110
||||||||||||||||||||||||| || |||| | | | | | || | |
Sbjct 465 ATTTCGGCGCGCTTGCTTGCGGGCTGGCACCAAACGTGATGGTCCTGAATCAGAGGAAAA 524
Query 111 TGTGACTAGGTTATTGAAAGTGGCGTGGTTGACATTTCCACTCGGAATAGAC-ATTACTA 169
|||||||||| |||||||||| || ||| ||||| |||||||||| |||| | |||||||
Sbjct 525 TGTGACTAGGATATTGAAAGTAGCATGGGTGACAGTTCCACTCGGGATAG-CTATTACTA 583
Query 170 TTGCAGCATGCATCTTTGTGTTATGGTGGCAGAACCTTAGTTACTCTGACACATATGCAC 229
||||||||||||| |||||||||||||||||||||||||||||||| ||| |||||||||
Sbjct 584 TTGCAGCATGCATTTTTGTGTTATGGTGGCAGAACCTTAGTTACTCCGACCCATATGCAC 643
Query 230 AGGCTATCCTCATATTC--GGATCTGCATGTGTACTGGAGCTAATGGCTGAGCCTTTGTA 287
|||||||| | |||| |||| |||||||||||||||||| |||||||| ||||||||
Sbjct 644 AGGCTATC-TGG-ATTCACGGATTTGCATGTGTACTGGAGCTTATGGCTGAACCTTTGTA 701
Query 288 TATCCTCTCGCAGACATTGATGCTTCTACAATTGCGGCTGATTGTTGAGACTGTTGCTAC 347
||||||||| ||||||||| || ||||| ||||| || ||||||||||| || |||||
Sbjct 702 TATCCTCTCTCAGACATTGCTGAAACTACAGTTGCGACTCATTGTTGAGACCGTAGCTAC 761
Query 348 AATTT-CACGTTGTGTAATTTTGTGCTCTCTCATAGTCATGCAACCCAACATGGAAAAAG 406
| || |||| ||||||| | ||| ||||||| ||||||||||| |||||||||||||||
Sbjct 762 A-TTGGCACGGTGTGTAACTCTGTACTCTCTCCTAGTCATGCAAACCAACATGGAAAAAG 820
Query 407 GGATAATCTTTGCACTGTCCCAAGTTGCATATGGAGGTTCCTTATTTCTTGGGTACTGGG 466
||||||||| ||| |||| ||||||||||||||||||||||| ||| ||||||||||||
Sbjct 821 TGATAATCTTCGCATTGTCACAAGTTGCATATGGAGGTTCCTTGTTTATTGGGTACTGGG 880
Query 467 CTTATTTTCTCTTTTGTGGTGTTTTCAAAAGTTCAGA-TCTCTTTCCTTTCAGACCCGGG 525
| ||||||||| | |||||||||| || |||||| || |||||||||||||||||| |||
Sbjct 881 CCTATTTTCTCATCTGTGGTGTTTACAGAAGTTC-GAATCTCTTTCCTTTCAGACCTGGG 939
Query 526 ACCTTCATGGATTTCGATGA-GCAGCTCTCGAACATGTGTATGCTATTTACTTTTCAGTC 584
| |||||||||||| ||| | | | |||||||| ||||||| ||| ||||||||||||||
Sbjct 940 AACTTCATGGATTTTGATAATG-ATCTCTCGAAGATGTGTAAGCTGTTTACTTTTCAGTC 998
Query 585 CTTCCGAAAGTTGATTCTCCAAGAAGGTGAAAAGTTGGTCCTGGTATGGTTCGATACTTC 644
|||||||||||| || || |||||||||||||| ||||||||||||||||| ||||| |
Sbjct 999 CTTCCGAAAGTTAATCCTTCAAGAAGGTGAAAAATTGGTCCTGGTATGGTTAGATACACC 1058
Query 645 TTATAATCAGGCTGTGTATGGAATCGTCGACAAACTAGGCAATTTAGTTGTACGCATGGT 704
|||||| |||||||| ||||| || |||||||||||||| | ||||||||||||||||||
Sbjct 1059 TTATAACCAGGCTGTATATGGGATAGTCGACAAACTAGGTAGTTTAGTTGTACGCATGGT 1118
Query 705 GTTTCTTCCCTTTGAAGAAA 724
|||||| |||||||||||||
Sbjct 1119 GTTTCTCCCCTTTGAAGAAA 1138
Score = 688 bits (372), Expect = 0.0
Identities = 576/672 (86%), Gaps = 23/672 (3%)
Strand=Plus/Plus
Query 729 TGATAACCAGGATAA-GAGCAAGAAACTCAGAATTTGTC-TGACCGAGGCCTTAAAGTTT 786
|||| | ||||| || || |||||||| |||||| | |||||| ||| || ||| ||
Sbjct 1173 TGATTATCAGGA-AAGGAATAAGAAACTTGGAATTT-ACTTGACCGTGGCGTTGAAGCTT 1230
Query 787 GTAATATTAATAGGTCTTACATTTATGGCATTTGGCCCGAGTTATTCGTACTCTTTTATC 846
|| |||||||||||||||| |||||||||||||||||||||||||||||||||| | |||
Sbjct 1231 GTGATATTAATAGGTCTTATATTTATGGCATTTGGCCCGAGTTATTCGTACTCTCTCATC 1290
Query 847 AGATTGTTGTATGGTGAAAAATGGAGCGATGGAGAAGCTTCCTTGGCACTACAGTTTTAT 906
|||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1291 AGATTGTTGTATGGCGAAAAATGGAGCGATGGAGAAGCTTCCTTGGCCCTACAGTTTTAT 1350
Query 907 TGTCTCTACATCATCGTCCTGGCCATGAACGGAACCTCCGAAGCATTTTTACATGCAGTT 966
|||||||||||||| ||||| ||||||||||| ||||| |||||||||||||||||||||
Sbjct 1351 TGTCTCTACATCATTGTCCTAGCCATGAACGGGACCTCGGAAGCATTTTTACATGCAGTT 1410
Query 967 GGAA-AAGAGAATCAACTAAAGCGCTCAAACAACATGTTGCTTGTATTTTCATTGATCTA 1025
|||| || ||||| |||| ||||||||||| ||||||||||| ||||||||||||| ||
Sbjct 1411 GGAACAA-AGAATGAACTGGAGCGCTCAAACGACATGTTGCTTATATTTTCATTGATTTA 1469
Query 1026 CATCATATTAAATATTCTGCTGATAAGATCTTTAGGAGCAATAGGCTTAATCTTGGCGAA 1085
| || |||||||||||| |||||||||||| ||||||||||| |||||| |||||||
Sbjct 1470 CGTCGCATTAAATATTCTACTGATAAGATCTGCCGGAGCAATAGGTTTAATCATGGCGAA 1529
Query 1086 TTCCTTGAATATGATTCTAAGGATCACCTGTTCAGGGCGATTCATCCAACATTACTTCCA 1145
|||||||||||||||| | ||||||| || ||||||| |||||||||||| |||||||||
Sbjct 1530 TTCCTTGAATATGATTTTTAGGATCATCTATTCAGGGAGATTCATCCAACGTTACTTCCA 1589
Query 1146 GGGCACTTCTTCATTCTCCTTCCGACAATGCTTACCTTTAGGCTGGCAGGTTCTTATCTT 1205
|||||||||||||||||| |||||| ||||||| |||||||| ||||| |||||||| |
Sbjct 1590 GGGCACTTCTTCATTCTCGTTCCGAAAATGCTTTCCTTTAGGTTGGCAAATTCTTATCCT 1649
Query 1206 TTCGGGCATAATCACTCTCATCTCAGAGAAAATCTTTCTTA-ACCATAAGAAATTCCGGG 1264
|||| ||||||||||||||||||||||||||| | | || | | | |||||| || |||
Sbjct 1650 TTCGAGCATAATCACTCTCATCTCAGAGAAAACCATCCT-AGATCGTAAGAACTTTTGGG 1708
Query 1265 AGACATTTCGCC---AT--CGG--T---T-TCCTTTGCATCTGTCTCTCAGCCATTGTCA 1313
| ||||||| || || ||| | | || | ||| ||||||| || ||||||||||
Sbjct 1709 AAACATTTCCCCTCCATTTCGGCATCGGTGTCATCTGCTTCTGTCTTTCGGCCATTGTCA 1768
Query 1314 TGTAAATACCGGTGTGAGAGACTGTTCATCAATAGAATCATACGTTTCAGGGATCACGAT 1373
| | |||||| ||||||| |||||||||| ||||||| ||||||||||||| || ||
Sbjct 1769 T--A--TACCGGCGTGAGAGGGTGTTCATCAAAAGAATCAAACGTTTCAGGGATTACAAT 1824
Query 1374 CACGGCGACTGA 1385
|||| |||||||
Sbjct 1825 CACGACGACTGA 1836
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69326952645
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5