BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg317859 Length=495 Score E Sequences producing significant alignments: (Bits) Value AT3G10585.1 | Symbols: | Homeodomain-like superfamily protein ... 302 3e-81 AT3G10590.1 | Symbols: | Duplicated homeodomain-like superfami... 198 4e-50 > AT3G10585.1 | Symbols: | Homeodomain-like superfamily protein | chr3:3308489-3309509 REVERSE LENGTH=656 Length=656 Score = 302 bits (163), Expect = 3e-81 Identities = 231/262 (88%), Gaps = 11/262 (4%) Strand=Plus/Plus Query 1 ATGGCTTGGATTCCGCCGTGGACGAGGGACGATGACAAGCGTTTTGAGTTAGCCCTGGTG 60 ||||||| |||||||||||||||||| ||| ||||||||||||||||||||||||||||| Sbjct 81 ATGGCTTTGATTCCGCCGTGGACGAGAGACAATGACAAGCGTTTTGAGTTAGCCCTGGTG 140 Query 61 ATATTCCCGGAGGGCTCGCCGTCGTTTTTGGAG-AGCATCGCTC-AGCTTCTGCAGAAAC 118 |||||||| ||||||||||||| ||||||||| | ||| || | || |||| ||||||| Sbjct 141 ATATTCCCTGAGGGCTCGCCGTATTTTTTGGAGTA-CATTGC-CGAGTTTCTACAGAAAC 198 Query 119 CTTTGG-GGTTGGTAAAGTACCACTACGACGCA-T-T-GGTCTACGATGTTGCGCTTG-T 173 |||||| || ||| |||||| ||||||||||| | | |||||| ||||||| ||| | | Sbjct 199 CTTTGGAGGA-GGTGAAGTACTACTACGACGCAATATTGGTCTATGATGTTGTGCT-GAT 256 Query 174 CGAATCGGGTAAGTATGCTTTACCCAAGTACCCGGACGACGATAACGTGTCACTGACGGA 233 |||||||||||||||||| ||||||||||||||||| | | || |||||||||||||||| Sbjct 257 CGAATCGGGTAAGTATGCATTACCCAAGTACCCGGAAGCCTATTACGTGTCACTGACGGA 316 Query 234 AGCGACTCAGTCCAAACACGGG 255 ||||||| |||||||||||||| Sbjct 317 AGCGACTGAGTCCAAACACGGG 338 Score = 147 bits (79), Expect = 1e-34 Identities = 103/115 (90%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 366 ACAAGTAGCAAGCCATGCACAGAAGTATGACAAAAGGCAAAAATTGGACATTAATAAGAG 425 |||||||||||| |||||||| |||||||||||||||||||||||||||| ||| ||||| Sbjct 407 ACAAGTAGCAAGTCATGCACAAAAGTATGACAAAAGGCAAAAATTGGACAGTAAGAAGAG 466 Query 426 GAAACGCAGGAGTATCCATGACATAACGTCGGAGTCTACCATGGGCAAGCCAGAT 480 ||||||| ||||| ||| ||||||||| | ||||||||| | ||||||| ||||| Sbjct 467 GAAACGCTGGAGTGTCCTTGACATAACTTTGGAGTCTACTAAGGGCAAGTCAGAT 521 > AT3G10590.1 | Symbols: | Duplicated homeodomain-like superfamily protein | chr3:3310424-3311311 REVERSE LENGTH=621 Length=621 Score = 198 bits (107), Expect = 4e-50 Identities = 191/229 (83%), Gaps = 15/229 (7%) Strand=Plus/Plus Query 258 TCCTTGGACAGAAGAGGAACACAGATTGTTTCTGGATGGATTGAACAAGTATGGGAAAGG 317 |||||||||||||||||||||||||||||||||| | |||||||| ||||||||| |||| Sbjct 333 TCCTTGGACAGAAGAGGAACACAGATTGTTTCTGCAAGGATTGAAAAAGTATGGGGAAGG 392 Query 318 AGCTTGGA-GTATGATATCAAGGGAATTT-GTGAAGACAAGGAC-CAAAATACAAGTAG- 373 ||||| || || ||| ||||| | ||||| |||||||||| ||| | | ||||| | Sbjct 393 AGCTTCGACGT-TGACATCAACG-AATTTTGTGAAGACAAAGACTCCACGG-CAAGT-GT 448 Query 374 CAAGCCATGCACAGAAGTATGACAAAAGGCAAAAATTGGACATTAATAAG-AGGAAACGC 432 |||||||||||||| | | | ||||||||||||||| ||||| ||| ||| || |||||| Sbjct 449 CAAGCCATGCACAGTA-T-T-ACAAAAGGCAAAAATCGGACAATAAGAAGGAG-AAACGC 504 Query 433 AGGAGTATCCATGACATAACGTCGGAGTCTACC-ATGGGCAAGCCAGAT 480 ||||||| ||||||||| | |||||||||| | |||||| |||||| Sbjct 505 CGGAGTATTTTTGACATAACTTTGGAGTCTACCGA-GGGCAATCCAGAT 552 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 23610049090 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5