BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg317859

Length=495
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G10585.1 | Symbols:  | Homeodomain-like superfamily protein ...   302    3e-81
  AT3G10590.1 | Symbols:  | Duplicated homeodomain-like superfami...   198    4e-50


> AT3G10585.1 | Symbols:  | Homeodomain-like superfamily protein 
| chr3:3308489-3309509 REVERSE LENGTH=656
Length=656

 Score =  302 bits (163),  Expect = 3e-81
 Identities = 231/262 (88%), Gaps = 11/262 (4%)
 Strand=Plus/Plus

Query  1    ATGGCTTGGATTCCGCCGTGGACGAGGGACGATGACAAGCGTTTTGAGTTAGCCCTGGTG  60
            ||||||| |||||||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct  81   ATGGCTTTGATTCCGCCGTGGACGAGAGACAATGACAAGCGTTTTGAGTTAGCCCTGGTG  140

Query  61   ATATTCCCGGAGGGCTCGCCGTCGTTTTTGGAG-AGCATCGCTC-AGCTTCTGCAGAAAC  118
            |||||||| |||||||||||||  ||||||||| | ||| || | || |||| |||||||
Sbjct  141  ATATTCCCTGAGGGCTCGCCGTATTTTTTGGAGTA-CATTGC-CGAGTTTCTACAGAAAC  198

Query  119  CTTTGG-GGTTGGTAAAGTACCACTACGACGCA-T-T-GGTCTACGATGTTGCGCTTG-T  173
            |||||| ||  ||| |||||| ||||||||||| | | |||||| ||||||| ||| | |
Sbjct  199  CTTTGGAGGA-GGTGAAGTACTACTACGACGCAATATTGGTCTATGATGTTGTGCT-GAT  256

Query  174  CGAATCGGGTAAGTATGCTTTACCCAAGTACCCGGACGACGATAACGTGTCACTGACGGA  233
            |||||||||||||||||| ||||||||||||||||| | | || ||||||||||||||||
Sbjct  257  CGAATCGGGTAAGTATGCATTACCCAAGTACCCGGAAGCCTATTACGTGTCACTGACGGA  316

Query  234  AGCGACTCAGTCCAAACACGGG  255
            ||||||| ||||||||||||||
Sbjct  317  AGCGACTGAGTCCAAACACGGG  338


 Score =  147 bits (79),  Expect = 1e-34
 Identities = 103/115 (90%), Gaps = 0/115 (0%)
 Strand=Plus/Plus

Query  366  ACAAGTAGCAAGCCATGCACAGAAGTATGACAAAAGGCAAAAATTGGACATTAATAAGAG  425
            |||||||||||| |||||||| |||||||||||||||||||||||||||| ||| |||||
Sbjct  407  ACAAGTAGCAAGTCATGCACAAAAGTATGACAAAAGGCAAAAATTGGACAGTAAGAAGAG  466

Query  426  GAAACGCAGGAGTATCCATGACATAACGTCGGAGTCTACCATGGGCAAGCCAGAT  480
            ||||||| ||||| ||| ||||||||| | ||||||||| | ||||||| |||||
Sbjct  467  GAAACGCTGGAGTGTCCTTGACATAACTTTGGAGTCTACTAAGGGCAAGTCAGAT  521


> AT3G10590.1 | Symbols:  | Duplicated homeodomain-like superfamily 
protein | chr3:3310424-3311311 REVERSE LENGTH=621
Length=621

 Score =  198 bits (107),  Expect = 4e-50
 Identities = 191/229 (83%), Gaps = 15/229 (7%)
 Strand=Plus/Plus

Query  258  TCCTTGGACAGAAGAGGAACACAGATTGTTTCTGGATGGATTGAACAAGTATGGGAAAGG  317
            |||||||||||||||||||||||||||||||||| | |||||||| ||||||||| ||||
Sbjct  333  TCCTTGGACAGAAGAGGAACACAGATTGTTTCTGCAAGGATTGAAAAAGTATGGGGAAGG  392

Query  318  AGCTTGGA-GTATGATATCAAGGGAATTT-GTGAAGACAAGGAC-CAAAATACAAGTAG-  373
            ||||| || || ||| ||||| | ||||| |||||||||| ||| | |    ||||| | 
Sbjct  393  AGCTTCGACGT-TGACATCAACG-AATTTTGTGAAGACAAAGACTCCACGG-CAAGT-GT  448

Query  374  CAAGCCATGCACAGAAGTATGACAAAAGGCAAAAATTGGACATTAATAAG-AGGAAACGC  432
            |||||||||||||| | | | ||||||||||||||| ||||| ||| ||| || ||||||
Sbjct  449  CAAGCCATGCACAGTA-T-T-ACAAAAGGCAAAAATCGGACAATAAGAAGGAG-AAACGC  504

Query  433  AGGAGTATCCATGACATAACGTCGGAGTCTACC-ATGGGCAAGCCAGAT  480
             |||||||   ||||||||| | |||||||||| | |||||| ||||||
Sbjct  505  CGGAGTATTTTTGACATAACTTTGGAGTCTACCGA-GGGCAATCCAGAT  552



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23610049090


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5