BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg317861
Length=1755
Score E
Sequences producing significant alignments: (Bits) Value
AT3G10600.1 | Symbols: CAT7 | cationic amino acid transporter 7... 2782 0.0
AT5G04770.1 | Symbols: ATCAT6, CAT6 | cationic amino acid trans... 1417 0.0
> AT3G10600.1 | Symbols: CAT7 | cationic amino acid transporter
7 | chr3:3313969-3317162 FORWARD LENGTH=1755
Length=1755
Score = 2782 bits (1506), Expect = 0.0
Identities = 1674/1757 (95%), Gaps = 4/1757 (0%)
Strand=Plus/Plus
Query 1 ATGGAGGCCCAATACCGGAACCACGACGGAGACACCTCCTTCTCTAGCCTCCGTGTCTAC 60
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1 ATGGAGGCCCAATACCGGAACCACGACGGAGACACCTCTTTCTCTAGCCTCCGTGTCTAC 60
Query 61 CTCAACTCTCTCTCCGACACTCCCTCCCGTTTTTCCCGCCGCGCCGTTTCCGTTTCCACC 120
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 61 CTCAACTCTCTCTCCGACACTCCCTCCCGTTTTTCCCGCCGAGCCGTTTCCGTTTCCACC 120
Query 121 TCTTACGACGAGATGAGCCGCGTCCGCGCCGTCTCCGGCGAGCAGATGCGCCGCACTCTC 180
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 121 TCTTACGACGAGATGAGCCGCGTCCGCGCCGTCTCCGGCGAGCAGATGCGTCGTACTCTC 180
Query 181 CGTTGGTACGATCTCATCGGACTCGGAATTGGCGGAATGATCGGAGCCGGCGTTTTCGTC 240
||||||||||||||||||||||||||||| || ||||||||||||||||| || ||||||
Sbjct 181 CGTTGGTACGATCTCATCGGACTCGGAATCGGTGGAATGATCGGAGCCGGAGTCTTCGTC 240
Query 241 ACCACCGGCCGTGCTAGTCGTCTCTACGCTGGTCCATCAATCGTTGTCTCCTACGCAATC 300
|||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 241 ACCACCGGCCGTGCTAGTCGTCTCTACGCTGGTCCATCAATCGTCGTCTCTTACGCAATC 300
Query 301 GCTGGACTCTCCGCTCTCCTCTCCGCCTTCTGTTACACCGAGTTCGCCGTCCACCTTCCC 360
|| ||||||| ||||| |||||||||||||||||||||||||||||||| ||||| |||
Sbjct 301 GCCGGACTCTGTGCTCTACTCTCCGCCTTCTGTTACACCGAGTTCGCCGTTCACCTCCCC 360
Query 361 GTCGCCGGCGGTGCTTTCAGCTACATCCGTATCACATTCGGCGAGTTCCCGGCGTTTATA 420
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 361 GTCGCCGGCGGTGCTTTCAGCTACATCCGTATCACATTCGGCGAGTTTCCGGCGTTTATA 420
Query 421 ACCGGAGCAAATCTGATAATGGACTACGTAATGTCAAACGCCGCCGTTTCAAGAGGCTTC 480
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||
Sbjct 421 ACCGGAGCAAATCTGATAATGGACTACGTACTGTCAAACGCCGCCGTTTCAAGAGGATTC 480
Query 481 ACAGCTTATCTCGGATCTGCTTTCGGAATCTCAGCATCGGAGTGGAGATTCATCGTCTCC 540
|| ||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||
Sbjct 481 ACCGCTTATCTCGGATCTGCATTCGGAATCTCAACATCGGAGTGGAGATTCATCGTCTCC 540
Query 541 GGTCTCCCAAACGGATTCAACGTAATCGATCCAATCGCCGTTATCGTCGTCCTCACCGTC 600
|||||||||||||||||||||| ||||||||| ||||||||||||||||||||| |||||
Sbjct 541 GGTCTCCCAAACGGATTCAACGAAATCGATCCCATCGCCGTTATCGTCGTCCTCGCCGTC 600
Query 601 ACGTTCATCATTTGTTACAGTACGAGAGAGAGTTCGAAGGTGAATATGGTTTTAACGGCG 660
|||||| |||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 601 ACGTTCGTCATCTGTTACAGTACGAGAGAGAGTTCGAAGGTGAATATGGTATTAACGGCG 660
Query 661 TTACACATTGCATTCT-TAGTATTCGTGATCGTCATGGGTTTCTGGAAAGGAGACATAAA 719
|||||||||||||| | ||||||||||||||||||||||||||| |||||||||| ||||
Sbjct 661 TTACACATTGCATT-TATAGTATTCGTGATCGTCATGGGTTTCTCGAAAGGAGACGTAAA 719
Query 720 GAATCTAACCCGACCCGATAACCCGGAAAATCCATCCGGATTCTTCCCGTTCGGGGTTTC 779
|||| ||||||||||||||||||||||||| |||||||||||||||||||| || |||||
Sbjct 720 GAATTTAACCCGACCCGATAACCCGGAAAACCCATCCGGATTCTTCCCGTTTGGAGTTTC 779
Query 780 GGGTGTGTTTAACGGAGCAGCAATGGTTTACCTAAGCTACATAGGATACGACGCCGTTTC 839
|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 780 GGGTGTGTTTAACGGAGCAGCAATGGTTTATCTAAGTTACATAGGATACGACGCCGTTTC 839
Query 840 GACAATGGCTGAAGAAGTAAAAGACCCGGTCAAAGACATACCAATGGGAATCTCTGGCTC 899
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 840 GACAATGGCTGAAGAAGTAAAAGACCCAGTCAAAGACATACCAATGGGAATCTCTGGCTC 899
Query 900 GGTCGCAATCGTCATTGTACTTTACTGTTTAATGGCTATCTCTATGTCAATGCTTCTCCC 959
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 AGTCGCAATCGTCATTGTACTTTACTGTTTAATGGCTATCTCTATGTCAATGCTTCTCCC 959
Query 960 GTACGATCTGATAGATCCGGAAGCACCGTACTCGGCCGCGTTTAGTAAATCGGAAGGATG 1019
|||||||||||||||| |||| |||||||| ||||| |||||||||||||||||||||||
Sbjct 960 GTACGATCTGATAGATGCGGAGGCACCGTATTCGGCGGCGTTTAGTAAATCGGAAGGATG 1019
Query 1020 GGAATGGGTGACGAAAGCGGTAGGGATAGGAGCAAGTTTTGGGATATTAACGTCGTTGTT 1079
|||||||||||||| || ||| ||||| ||||||||||| |||||||||||||||||| |
Sbjct 1020 GGAATGGGTGACGAGAGTGGTTGGGATTGGAGCAAGTTTCGGGATATTAACGTCGTTGAT 1079
Query 1080 AGTAGCCATGTTGGGTCAGGCTCGGTACATGTGTGTCATCGGACGGTCAAGAGTTGTCCC 1139
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1080 AGTAGCCATGTTGGGTCAGGCTCGGTACATGTGCGTCATCGGACGGTCAAGAGTTGTCCC 1139
Query 1140 CATTTGGTTCGCTAAGGTTCATCCCAAGACATCTACTCCAGTCAACGCTTCCGCTTTTCT 1199
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1140 CATTTGGTTTGCTAAGGTTCATCCCAAGACATCTACTCCAGTCAACGCTTCCGCTTTTCT 1199
Query 1200 TGGAATCTTCACGGCGTTTCTCGCCCTCTTCACCGACCTAAACGTCCTCCTAAACCTAGT 1259
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1200 TGGAATCTTCACGGCGGTTCTCGCCCTCTTCACCGACCTAAACGTCCTCCTAAACCTAGT 1259
Query 1260 GTCCATTGGAACGCTATTCGTCTTCTACATGGTCGCAAACGCTGTTATATTTCGCCGCTA 1319
||||| |||||||| ||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 1260 CTCCATCGGAACGCTCTTCGTCTTCTATATGGTCGCAAACGCTGTTATATTTCGCCGTTA 1319
Query 1320 TGTAGCGGTCGGATACACCAAGCCATGGCCAACACTCTCCTTCCTCTGCCTATTCTCCAT 1379
||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1320 CGTAACGGTCGGATACACGGAGCCATGGCCAACACTCTCCTTCCTCTGCCTATTCTCCAT 1379
Query 1380 AACCTCAATTTTCTTCACCTTAGTCTGGCAACTTGCACCG-CGAGGCCCACCTAAATGGT 1438
|||||||||||| || ||||| |||||||||||||||||| || ||||||||||||||||
Sbjct 1380 AACCTCAATTTTGTTTACCTTGGTCTGGCAACTTGCACCGTCG-GGCCCACCTAAATGGT 1438
Query 1439 TCATACTCGGAGCCAGCGCGGTCACGGCTATAGCCATCGTTCAGATATTCCATTGTGTAG 1498
||||||| ||||| ||| |||||||||||||||||||||| ||||||||||||||||| |
Sbjct 1439 TCATACTTGGAGCTAGCACGGTCACGGCTATAGCCATCGTCCAGATATTCCATTGTGTTG 1498
Query 1499 TACCTCAAGCTAGGATCCCTGAGTTTTGGGGTGTACCGTTGATGCCGTGGACTCCATGCG 1558
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1499 TACCTCAAGCTAGGATCCCTGAGTTTTGGGGTGTACCGTTGATGCCGTGGACTCCATGCG 1558
Query 1559 TTTCAATATTTTTGAACATTTTCTTGCTTGGATCATTGGATGCTCCTTCGTATATCAGAT 1618
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1559 TTTCGATATTTTTGAACATTTTCTTGCTTGGATCATTGGATGCTCCTTCGTATATCAGAT 1618
Query 1619 TCGGGTTCTTCTCGGGATTAGCAGTTCTCATATATGTGTTTTATAGTGTTCATGCGAGCT 1678
||||||||||||||||||||| || ||| | ||||||||||||||||||||||| ||||
Sbjct 1619 TCGGGTTCTTCTCGGGATTAGTGGTGCTCGTGTATGTGTTTTATAGTGTTCATGCAAGCT 1678
Query 1679 ATGATGCTGAAGGAGACGGGTCTCTTGATTTCAAAGATGTTGAAAGCCTTGAAAGAATCA 1738
||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |
Sbjct 1679 ATGATGCTGAAGGAGACGGGTCTCTTGATTTCAAAGACGTGGAAAGCCTTGAAAGAATTA 1738
Query 1739 ACATAGTGTTGAGTTAA 1755
||| |||||||||||||
Sbjct 1739 ACAGAGTGTTGAGTTAA 1755
> AT5G04770.1 | Symbols: ATCAT6, CAT6 | cationic amino acid transporter
6 | chr5:1379068-1382419 FORWARD LENGTH=1917
Length=1917
Score = 1417 bits (767), Expect = 0.0
Identities = 1411/1720 (82%), Gaps = 51/1720 (3%)
Strand=Plus/Plus
Query 40 TTCTCTAGCCTCCGTGTCTACCTCAACTCTCTCTCCGAC-ACTCCCTCCCGTTTTTCCCG 98
||||| || ||||| ||||||||||||||||| |||| | || || || || || |||||
Sbjct 93 TTCTCCAGTCTCCGCGTCTACCTCAACTCTCTTTCCG-CGACGCCTTCTCGCTTATCCCG 151
Query 99 CCGCGCCGTTTCCGTTTCCACCTCTTACGACGAGATGAGCCGCGTCCGCGCCGTCTCCGG 158
|||||| ||||||| |||||||||| |||||||||||| ||||||||||||||||||||
Sbjct 152 CCGCGCTATTTCCGTCTCCACCTCTTCCGACGAGATGAGTCGCGTCCGCGCCGTCTCCGG 211
Query 159 CGAGCAGATGCGCCGCACTCTCCGTTGGTACGATCTCATCGGACTCGGAATTGGCGGAAT 218
||| ||||||||||| |||||||| |||||||||||||| ||||||||||| || |||||
Sbjct 212 CGAACAGATGCGCCGTACTCTCCGGTGGTACGATCTCATTGGACTCGGAATCGGGGGAAT 271
Query 219 GATCGGAGCCGGCGT-TTTCGTCACCACCGGCCGTGCTAGTCGTCTCTACGCTGGTCCAT 277
| |||| ||||| || ||| ||||||||||||||||||||||||||| |||| ||||| |
Sbjct 272 GGTCGGCGCCGGTGTCTTT-GTCACCACCGGCCGTGCTAGTCGTCTCGACGCCGGTCCTT 330
Query 278 CAATCGTTGTCTCCTACGCAATCGCTGGACTCTCCGCTCTCCTCTCCGCCTTCTGTTACA 337
|||| || ||||| ||||| ||||| || |||| ||||||||||||||| ||||||||||
Sbjct 331 CAATTGTCGTCTCTTACGCCATCGCCGGGCTCTGCGCTCTCCTCTCCGCTTTCTGTTACA 390
Query 338 CCGAGTTCGCCGTCCACCTTCCC-GTCGCCGGCGGTGCTTTCAGCTACATCCGTATCACA 396
|||| ||||||||||| | |||| |||||||||||||| |||||||||||||||||||||
Sbjct 391 CCGAATTCGCCGTCCATC-TCCCGGTCGCCGGCGGTGCCTTCAGCTACATCCGTATCACA 449
Query 397 TTCGGCGAGTTCCCGGCGTTTATAACCGGAGCAAATC-TGATAATGGACTACGTAATGTC 455
||||| || || || || ||| | ||||||||||||| || ||||||| |||||||||||
Sbjct 450 TTCGGTGAATTTCCAGCATTTTTCACCGGAGCAAATCTTG-TAATGGATTACGTAATGTC 508
Query 456 AAACGCCGCCGTTTCAAGAGGCTTCACAGCTTATCTCGGATCTGCTTTCGGAATCTCAGC 515
|||||| |||||||| ||| ||||||| |||||| | ||| | |||||||| |||||| |
Sbjct 509 AAACGCGGCCGTTTCGAGAAGCTTCACCGCTTATTTAGGAACAGCTTTCGGGATCTCAAC 568
Query 516 ATCGGAGTGGAGATTCATCGTCTCCGGTCT-CCCAAACGGATTCAACGTA-ATCGATCCA 573
|| ||||| ||||| ||||||||||| | || ||| |||||||||| | || ||||||
Sbjct 569 TTCCAAGTGGCGATTCGTCGTCTCCGGTTTACCGAAA-GGATTCAACG-AGATTGATCCA 626
Query 574 ATCGCCGTTATCGTCGTCCTCACCGTCAC-GTTCATCATTTGTTACAGTACGAGAGAGAG 632
|||| ||| ||||||||||| |||| | ||||||| |||| |||||| ||||||||
Sbjct 627 GTCGCAGTTCTCGTCGTCCTCGTAATCACAG-TCATCATCTGTTGCAGTACAAGAGAGAG 685
Query 633 TTCGAAGGTGAATATGGTTTTAACGGCGTTACACATTGCATTCTTAGTATTCGTGATCGT 692
||| || ||||| ||| | | || || || ||||| |||||| || | |||||||||||
Sbjct 686 TTCCAAAGTGAACATGATAATGACTGCATTTCACATCGCATTCATATTCTTCGTGATCGT 745
Query 693 CATGGGTTTC-TGGAAAGGAGACAT-AAAGAATCTAACC-CGACCCGATAACCCGGAAAA 749
||||| ||| | |||||||| | |||||||||| || | ||| | || || || |
Sbjct 746 GATGGGATTCAT-AAAAGGAGA-TTCAAAGAATCTATCCTC-ACCGGCGAATCCAGAGCA 802
Query 750 TCCATCCGGATTCTTCCCGTTCGGGGTTTCGGGTGTGTTT-AACGGAGCAGCAATGGTTT 808
|| || ||||| || |||||||| | |||| || ||| |||||||| || |||||||
Sbjct 803 CCCCTCGGGATTTTTTCCGTTCGGCGCGGCGGGAGT-TTTCAACGGAGCTGCCATGGTTT 861
Query 809 ACCTAAGCTACATAGGATACGACGCCGTTTCGACAATGGCTGAAGAAGTA-AAAGACCCG 867
|| |||||||||||||||||||||||||||| || ||||| |||||||| ||| | |||
Sbjct 862 ACTTAAGCTACATAGGATACGACGCCGTTTCAACCATGGCGGAAGAAGTTGAAA-ATCCG 920
Query 868 GTCAAAGACATACCAATGGGAATCTCTGGCTCGGTCGCAATCGTCATTGTACTTTACTGT 927
|||||||| || || | || | || ||||| ||||||||||||| || |||||||||
Sbjct 921 GTCAAAGATATCCCCGTCGGTGTTTCCGGCTCCGTCGCAATCGTCACCGTTCTTTACTGT 980
Query 928 TTAATGGCTA-TCTCTATGTCAATGCTTCTCCCGTACGATCTGATAGATCCGGAAGCACC 986
| ||||| | ||||||||||||||||||| || |||||||||||||||||||| || ||
Sbjct 981 CTCATGGC-AGTCTCTATGTCAATGCTTCTGCCATACGATCTGATAGATCCGGAGGCGCC 1039
Query 987 GTACTCGGCCGCGTTTAGTAA-ATCGGAA-GGATGGGAATGGGTGACGAAAGCGGTAGGG 1044
|| || || ||||| || | |||| || || ||||||||||||||||||| ||| |||
Sbjct 1040 GTTTTCCGCGGCGTTCAG-AGGATCG-AACGGCTGGGAATGGGTGACGAAAGTGGTGGGG 1097
Query 1045 ATAGGAGCAAGTTTTGGGATATTAACGTCG-TTGTTAGTAGCCATGTTGGGTCAGGCTCG 1103
||||||||||| |||||||||||||| || || || || || ||||| |||||||||||
Sbjct 1098 ATAGGAGCAAGCTTTGGGATATTAACATCACTT-TTGGTGGCAATGTTAGGTCAGGCTCG 1156
Query 1104 GTACATGTGTGTCATCGGACGGTCAAGAGTTGTCCCCATTTGGTTCGCTAAGGTTCATCC 1163
||||||||||||||||||||||| ||||| |||||| |||||||||||||| |||||||
Sbjct 1157 CTACATGTGTGTCATCGGACGGTCCAGAGTGGTCCCCTTTTGGTTCGCTAAGATTCATCC 1216
Query 1164 CAAGACATCTACTCCAGTCAACGCTTCCGCTTTTCTTGGAATCTTCACGGCGTTTCTCGC 1223
||| |||||||| ||||||||||| ||| |||||||||| || ||||||||| ||| ||
Sbjct 1217 CAAAACATCTACGCCAGTCAACGCCTCCACTTTTCTTGGCATTTTCACGGCGGCTCTTGC 1276
Query 1224 CCTCTTCACCGACCTAAACGTCCTCCTAAACCTAGTGTCCATTGGAACGCTATTCGTCTT 1283
|| ||||||||||||||||||||||||||||| || ||||||||||| ||||| |||||
Sbjct 1277 GCTTTTCACCGACCTAAACGTCCTCCTAAACCTCGTATCCATTGGAACACTATTTGTCTT 1336
Query 1284 CTACATGGTCGCAAACGCTGTTATATTTC-GCCGCTATGTAGCGGTCGGATACACCAAGC 1342
||||||||||||||||||| | || || | | || || || |||| ||| ||||||||
Sbjct 1337 CTACATGGTCGCAAACGCTCTCATCTT-CAGACGTTACGTCCCGGTTGGACCCACCAAGC 1395
Query 1343 CATGGCCAACACTCTCCTTCCTCTGC-CTATTCTCCATAACCTCAATTTTCTTCACCTT- 1400
| ||||| ||||||| ||||||| | ||||||||||||||||| | |||||||| |
Sbjct 1396 CGTGGCCCACACTCTGCTTCCTCA-CACTATTCTCCATAACCTCTCTCGTCTTCACCCTC 1454
Query 1401 AGTCTGGCAACTTGCACCGCGA-GGCCCA-CCTAAATGGTT-CATACTCGGAGCCAGCGC 1457
| ||||| |||||| ||| || || | |||||| | || ||| ||||| ||||| ||
Sbjct 1455 A-TCTGGAAACTTGTGCCG-GAAGGTA-AGCCTAAA-GCTTTCATGCTCGGTGCCAGTGC 1510
Query 1458 GGTCACGGCTATAGCCATCGTTCAGATATTCCATTGTGTAGTACCTCAAGCTAGGATCCC 1517
||| ||||||||||||||| | || || || || || || || || ||||||| ||
Sbjct 1511 GGTGGTGGCTATAGCCATCGTGCTGAGCTTTCAGTGCGTGGTTCCCCAGGCTAGGAAACC 1570
Query 1518 TGAGTTTTGGGGTGTACCGTTGATGCCGTGGACTCCATGCGTTTCAATATTTTTGAACAT 1577
|||||| ||||| || ||||| ||||||||||| || ||||| || ||||| ||||||||
Sbjct 1571 TGAGTTGTGGGGAGTCCCGTTCATGCCGTGGACCCCGTGCGTGTCGATATTCTTGAACAT 1630
Query 1578 TTTCTTGCTTGGATCATTGGATGCTCCTTCGTATATCAGATTCGGGTTCTTCTCGGGATT 1637
||| |||||||| || ||||| || || || || || | || || |||||||| || ||
Sbjct 1631 TTTTTTGCTTGGTTCGTTGGACGCACCCTCTTACGTCCGGTTTGGATTCTTCTCCGGTTT 1690
Query 1638 -AGCAGTTCTCATATATGTGTTTTATAGTGTTCATGCGAGCTATGATGCTGAAG-GAGAC 1695
| | || ||| | ||| |||||||| | ||||||||||| | ||||||||||| || |
Sbjct 1691 GATC-GTGCTCGTGTATTTGTTTTATGGCGTTCATGCGAGTTCTGATGCTGAAGCGA-AT 1748
Query 1696 GGGTCTCTTGATTTCAAAGATGTTGA-AAGCCTTGAAAGA 1734
|| ||| ||| | | ||||||| || ||| | |||||||
Sbjct 1749 GGATCTTTTGGTGTGAAAGATG--GACAAGTCATGAAAGA 1786
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86796742305
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5