BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg317863
Length=669
Score E
Sequences producing significant alignments: (Bits) Value
AT3G10620.1 | Symbols: ATNUDX26, NUDX26 | nudix hydrolase homol... 918 0.0
AT3G10630.1 | Symbols: | UDP-Glycosyltransferase superfamily p... 117 1e-25
> AT3G10620.1 | Symbols: ATNUDX26, NUDX26 | nudix hydrolase homolog
26 | chr3:3320263-3321724 FORWARD LENGTH=810
Length=810
Score = 918 bits (497), Expect = 0.0
Identities = 615/669 (92%), Gaps = 20/669 (3%)
Strand=Plus/Plus
Query 1 ATGGCATTGTACCGATCGCTTGTCTTGCATCATCGCCCAACATCTCCGACAGTAATTCCG 60
|||||| |||||||| | ||| ||||||||||| ||||| |||||| | |||| | ||
Sbjct 1 ATGGCACTGTACCGACCCCTTCTCTTGCATCAT---CCAACTTCTCCGTCTGTAACTACG 57
Query 61 TTAT-TCCGAAATTACCCCTCGAAAGCGCTGAAATTCTCGAGCCTGCCCTTCCTCCACCG 119
|| | | |||||||||||||||||| || | |||||||| |||||||||||||| || ||
Sbjct 58 TT-TCTACGAAATTACCCCTCGAAACCGATCAAATTCTCCAGCCTGCCCTTCCTTCATCG 116
Query 120 CTGCAGTAAGTCTCAGGTCTCCTCCTCCTCCGCTCGGTGTTGTTCTTCATCGTCGTCGTC 179
|||| ||||||||| |||||||||||||||||||| | | || | | || ||
Sbjct 117 CTGCCGTAAGTCTCGGGTCTCCTCCTCCTCCGCTC-G-G-TG-------T--T-GT--TC 161
Query 180 TTCCATGGAATCTCCTCCGGAAGGCTACAGAAGAAATGTCGGTGTCTGCCTCATGAACTC 239
|||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||| ||
Sbjct 162 TTCCATGGAATCTCCTCCTGAAGGATACAGAAGAAATGTCGGCGTCTGCCTCATGAATTC 221
Query 240 TTCCAAAAAGATTTTCACTGCCTCGAGGTTGGATATTCCCAGTGCTTGGCAAATGCCTCA 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 222 TTCCAAAAAGATTTTCACTGCCTCGAGGTTGGATATTCCCAGTGCTTGGCAAATGCCTCA 281
Query 300 GGGTGGAATCGACGAGGGTGAAGATCCAAGAGTTGCAGTTATGAGAGAGCTTAAAGAAGA 359
||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 282 GGGTGGAATCGACGAAGGTGAAGATCCAAGAGTTGCAGTCATGAGAGAGCTTAAAGAAGA 341
Query 360 GACTGGAGTTCACTCTGCTGAGATTGTCGCTGAGGCACCTCACTGGATAACGTACGACTT 419
||||||||||||||||||||||||| ||||||||||||||||||||||||| || |||||
Sbjct 342 GACTGGAGTTCACTCTGCTGAGATTCTCGCTGAGGCACCTCACTGGATAACCTATGACTT 401
Query 420 CCCCCCTGATGTTAGGGAGAAGCTCAAGGTCCGATGGGGATCTGATTGGAAGGGTCAAGC 479
||| |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 402 CCCTCCTGATGTTAGGGAGAAGCTTAAGGTCCGATGGGGATCCGATTGGAAGGGTCAAGC 461
Query 480 ACAGAAATGGTTTCTTCTGAAATTTACTGGGAAAGATGAAGAAATCAATCTTCTTGGCGA 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 462 ACAGAAATGGTTTCTTCTGAAATTTACTGGGAAAGATGAAGAAATCAATCTTCTTGGCGA 521
Query 540 TGGTTCTGAGAAACCTGAGTTTGGTGAATGGTCCTGGACATCTCCTGATCAAGTCGTTGA 599
|||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 522 TGGTACTGAGAAACCTGAGTTTGGTGAATGGTCCTGGACTTCTCCTGATCAAGTCGTTGA 581
Query 600 ACATGCAGTGGATTTCAAGAAGCCAGTGTACAAGGAAGTCATGTCAGCTTTCGCTTCTCA 659
| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 582 AAATGCAGTGGAGTTCAAGAAGCCAGTGTACAAGGAAGTCATGTCAGCTTTCGCTTCTCA 641
Query 660 TCTCCAGTA 668
|||||||||
Sbjct 642 TCTCCAGTA 650
> AT3G10630.1 | Symbols: | UDP-Glycosyltransferase superfamily
protein | chr3:3321463-3323211 REVERSE LENGTH=1749
Length=1749
Score = 117 bits (63), Expect = 1e-25
Identities = 67/69 (97%), Gaps = 0/69 (0%)
Strand=Plus/Minus
Query 600 ACATGCAGTGGATTTCAAGAAGCCAGTGTACAAGGAAGTCATGTCAGCTTTCGCTTCTCA 659
||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1716 ACAGGCAGTGGAGTTCAAGAAGCCAGTGTACAAGGAAGTCATGTCAGCTTTCGCTTCTCA 1657
Query 660 TCTCCAGTA 668
|||||||||
Sbjct 1656 TCTCCAGTA 1648
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32350790668
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5