BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg317879
Length=2097
Score E
Sequences producing significant alignments: (Bits) Value
AT3G10810.1 | Symbols: | zinc finger (C3HC4-type RING finger) ... 2525 0.0
AT3G10815.1 | Symbols: | RING/U-box superfamily protein | chr3... 835 0.0
> AT3G10810.1 | Symbols: | zinc finger (C3HC4-type RING finger)
family protein | chr3:3381848-3384509 REVERSE LENGTH=1773
Length=1773
Score = 2525 bits (1367), Expect = 0.0
Identities = 1496/1556 (96%), Gaps = 17/1556 (1%)
Strand=Plus/Plus
Query 547 AGGTGGGGTTTCTCTTTGTTGCTATGGCTTGAAACCTTAGTTTGCTTTTTGTCAATGGGT 606
|||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||
Sbjct 230 AGGTGGGGTTTCTCTTTGTTGCTATGTCTTGAAACCTTAGTTTGC-TTTTGTCAATGGGT 288
Query 607 AAAACCGAGGATGATGTGAATCTCCGTGTCGCCGGCGGCGAAGCTACCGGCGATTCGACG 666
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 289 AAAACCGAGGATGATGTGAGTCTCCGTGTCGCCGGCGGCGAAGCTACCGGCGATTCGACG 348
Query 667 GAGAGGAATGCTCGGTGTGGGTGTTGCAAATGGATCTCAAGCTTCGTTGGGTTCAAAtgt 726
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 349 GTGAGGAATGCTCGGTGTGGGTGTTGCAAATGGATCTCAAGCTTCGTTGGGTTCAAATGT 408
Query 727 ttcttcgtactgcttttttcagt-gtctttgtttctttcggctttgtttttgttgcttcc 785
|| ||||| |||||||| ||||| | ||||||||||||||||||||||||||||||||||
Sbjct 409 TTATTCGTGCTGCTTTTATCAGTCG-CTTTGTTTCTTTCGGCTTTGTTTTTGTTGCTTCC 467
Query 786 gtttcCTATGGATCGTGAGGATTCGAATCTCGATCCCAGATTTAGAGGTCATGCTATATT 845
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
Sbjct 468 GTTTCCTATGGATCGTGAGGATTCGAATCTTGATCCCAGATTTAGAGGTCATGCTATAGT 527
Query 846 AGCCAGTTTTAGCATCAATAGATCGGCTTCTTTTCTTAATGATAATACATTGCAGCTTCA 905
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 528 GGCCAGTTTTAGCATCAATAGATCGGCTTCTTTTCTTAATGAAAATACATTGCAGCTTCA 587
Query 906 GAATGACATCTTTCAAGAGATGAGCTACATTTCCATCAAAGTAACTATCCTGGCTGTTGA 965
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 588 GAATGACATCTTTCAAGAGATGAGCTACATTTCCATCAAAGTAACTATCCTGGCTGTTGA 647
Query 966 GCCGTCAGATGAATTGAACATAACAAAGGTTGTGTTTGGAATTGACCCTGATACTGGATA 1025
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 648 GCCGTCAGATGAATTGAACATAACAAAGGTTGTGTTTGGAATTGACCCTGATACTGGATA 707
Query 1026 CCGAGAAATCTTACCTCTGTCCTTGAGTTCTATCAAAGAGATGTTCGAATCGGTGCTCAT 1085
|||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||
Sbjct 708 CCGAGAAATCTTACCTCTGTCCCTGAGTTCTATCAAAGAGATGTTTGAATCGGTGCTCAT 767
Query 1086 AAATCAATCTACTCTCCAGCTTACAAAATCCTTGTTTGGGGAAACCTTCCTTTTTGAAGT 1145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 768 AAATCAATCTACTCTCCAGCTTACAAAATCCTTGTTTGGGGAAACCTTCCTTTTTGAAGT 827
Query 1146 GCTAAAGTTTCCAGGAGGAATCACTGTGATTCCACCGCAAAGTGTTTTCCCTCTGCAGAA 1205
|||||| ||||||||||||||||||||||||||||| ||||||| |||||||||||||||
Sbjct 828 GCTAAAATTTCCAGGAGGAATCACTGTGATTCCACCACAAAGTGCTTTCCCTCTGCAGAA 887
Query 1206 ATTCAAGATTGTTTTCAACTTTACCCTAAACTACTCTATTCACCAGATACAGATAAACTT 1265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 888 ATTCAAGATTGTTTTCAACTTTACCCTAAACTACTCTATTCACCAGATACAGATAAACTT 947
Query 1266 CAATACCCTTGCTAGTCAACTCAAGAATGGGCTGAATCTCGCACCATACGAGAATTTGTA 1325
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 948 CAATACCCTTGCTAGTCAACTCAAAAATGGGCTGAATCTCGCACCATACGAGAATTTGTA 1007
Query 1326 TGTAAGCTTATCGAACTCAGAAGGGTCGACCGTGTCTCCCCCGACAACTGTTCACTCATC 1385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1008 TGTAAGCTTATCGAACTCAGAAGGGTCGACCGTGTCTCCCCCGACAACTGTTCACTCATC 1067
Query 1386 GGTTTTGCTAAGAGTCGGGTCTTCAAATTCAAGCCCAAGGTTGAAACAACTGGCTGATAC 1445
|||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 1068 AGTTTTGCTAAGAGTCGGGACTTCAAATTCAAGCCCAAGGTTGAAACAACTGACTGATAC 1127
Query 1446 CATCACAGGTTCACGCTCGAAAAACCTTGGCCTGAATAATACCATATTTGGTAAGGTCAA 1505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1128 CATCACAGGTTCACGCTCGAAAAACCTTGGCCTGAATAATACCATATTTGGTAAGGTCAA 1187
Query 1506 GCAAGTTCGTCTTTCATCTTTCTTGCCAAACAGCAGTGATAGTAGCACCAAatctccatc 1565
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1188 GCAAGTTCGTCTGTCATCTTTCTTGCCAAACAGCAGTGATAGTAGCACCAAATCTCCATC 1247
Query 1566 accctcacctagtccccactccaagcaccaccatcaccatcaccatcaccatcaccacca 1625
|||||||||||||||||| || ||||| ||||||||||||||||||||||||
Sbjct 1248 ACCCTCACCTAGTCCCCATTCGAAGCA------TCACCATCACCATCACCATCACCA--- 1298
Query 1626 tcaccaccaccaccatcaccatcacaaccatcatcaccaccaccaccaccatcTTAGCCC 1685
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1299 TCACCACCACCACCATCACCATCACAACCATCATCACCACCACCACCACAATCTTAGCCC 1358
Query 1686 GAATATGGCTCCCGAGGTTTCACCTGTGGCCTCTCCTGCTCCTCAGAGAAGCCGCAGGAG 1745
||| ||||||||||||||||||||||||||||||||||||||||| |||||||| | |||
Sbjct 1359 GAAAATGGCTCCCGAGGTTTCACCTGTGGCCTCTCCTGCTCCTCACAGAAGCCGTAAGAG 1418
Query 1746 AGCTCCATCTGCACCTCCACCCTGCAACTCAGGGAATAGAGTACATTTCAAGGAGAAACA 1805
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1419 AGCTCCATCTGCACCTCCACCCTGCAACCCAGGGAATAGAGTACATTTCAAGGAGAAACG 1478
Query 1806 CGTGCA-TTTTCCATCCACACCTGCGCCTGCTCCTTCTACTGGGGCACCACGTCATCAGC 1864
|||||| ||||| ||||||||||||||||||||||||| |||||||||||| ||||||||
Sbjct 1479 CGTGCAGTTTTC-ATCCACACCTGCGCCTGCTCCTTCTGCTGGGGCACCACATCATCAGC 1537
Query 1865 TGCACTCACCGGCCCCGATTCCTGCAGCCAAGTCTCATATAGTTCCAATCTCTGCCCCTC 1924
|||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1538 TGCACTCACCGGCCCCAATTTCTGCAGCCAAGTCTCATATAGTTCCAATCTCTGCCCCTC 1597
Query 1925 TACCACATGTGGTGTTTGCCCATGCAGCTCAACCACCCAAAACCGAACCAAGGGAACCTC 1984
||||||||||||||||||||||||||||||||||||||| ||| |||||| ||||||| |
Sbjct 1598 TACCACATGTGGTGTTTGCCCATGCAGCTCAACCACCCATAACGGAACCACGGGAACCAC 1657
Query 1985 ACGCAAACGAAGCTGCTCATCCTCAACCGCAGACCTCTTCATC-G--ATTGCGGTTTTAC 2041
| |||||||||| ||||||||||||||||||| |||||||||| | |||| ||||||||
Sbjct 1658 ATGCAAACGAAGTTGCTCATCCTCAACCGCAGTCCTCTTCATCAGCGATTGAGGTTTTAC 1717
Query 2042 CAGCTCTGCCATGGATTGTCCTTCTCATGCTGATAGTGGCCGGGCTTCATGAATAA 2097
||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1718 CAGCTATGCCATGGATTGTCCTTCTCATGCTGATAGTGGCCTGGCTTCATGAATAA 1773
> AT3G10815.1 | Symbols: | RING/U-box superfamily protein | chr3:3384807-3386327
REVERSE LENGTH=846
Length=846
Score = 835 bits (452), Expect = 0.0
Identities = 522/555 (94%), Gaps = 7/555 (1%)
Strand=Plus/Plus
Query 1 ATGACTACGACTAGGC-GAAAAAGCACACATTGGTGTAC-TACTTGTAGACGAGGAATCC 58
|||||||||||||||| |||||| |||||||||||| | ||||||||||||||||||||
Sbjct 45 ATGACTACGACTAGGCGGAAAAA-TACACATTGGTGT-CATACTTGTAGACGAGGAATCC 102
Query 59 ATCTTCAAGGAGAAGGCAGAAGAGGAGGAGCTTGCATTTATTGTGGTAACACCTTTCTTG 118
|||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||
Sbjct 103 ATCTTCAAGGAGAAGGCAGAAGAGAAGGAGCTTGCATTTACTGTGGTAACACCTTTCTTG 162
Query 119 AAAGGCTCTATGAGAATGTGGAACTAAGCCCTTTTGATTTATTCGGATTAGCCTTTGAAG 178
||||||| ||||||||||| |||||||||||||||||||||||||||||||||| ||||
Sbjct 163 AAAGGCTATATGAGAATGTTGAACTAAGCCCTTTTGATTTATTCGGATTAGCCTACGAAG 222
Query 179 AAGCTCGTAACCGTCGCAATAACAGAAGATCGGTTCTCGGAGACCAACTAAGTTTTGAAG 238
||||||||||||||||||| ||||||||||||||| | ||||| ||||||||||||||||
Sbjct 223 AAGCTCGTAACCGTCGCAACAACAGAAGATCGGTTATAGGAGAACAACTAAGTTTTGAAG 282
Query 239 AGTTGTTTAACCGGCTCCCAG--C-ACAAGACCGTCGTGGTCCTCCTCCAGCTTCACTAG 295
||||||||||||||||||||| | ||||||||||||||||||||||||||| |||||||
Sbjct 283 AGTTGTTTAACCGGCTCCCAGCACTACAAGACCGTCGTGGTCCTCCTCCAGCATCACTAG 342
Query 296 CTGCGATTAACTCATTGCAAAAGATCAAAATCAGGCAGAAGCATCTCGGTTTGGATCCAT 355
| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 343 CCGCGATTAACTCATTGCAAAAGATCAAAATCAGGCAGAAGCATCTCGGTTTAGATCCCT 402
Query 356 ATTGTCCGGTTTGCCAAGACCAGTTTGAAATCGGATCGGTTGCAAGAAAGATGCCGTGTA 415
||||||||||||||||||||||||||||||||||||| | ||||||||| ||||||||||
Sbjct 403 ATTGTCCGGTTTGCCAAGACCAGTTTGAAATCGGATCAGATGCAAGAAAAATGCCGTGTA 462
Query 416 AACATATCTACCATTCGGAATGTATACTCCCGTGGTTAGTCCAACGTAACACTTGCCCCG 475
|||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 463 AACATATCTACCATTCTGAATGTATACTCCCGTGGTTAGTCCAGCGTAATACTTGCCCCG 522
Query 476 TCTGCCGCAAAGAACTACCACAAGACCGGAGTAATGGCCGGAAAAATCCATTGTGGCATC 535
|||||||||||||||| ||||||||||| | |||| ||||||||||||||||||||||||
Sbjct 523 TCTGCCGCAAAGAACTTCCACAAGACCGAAATAATAGCCGGAAAAATCCATTGTGGCATC 582
Query 536 TTTGGCCGTTCAGGT 550
| |||||||||||||
Sbjct 583 TGTGGCCGTTCAGGT 597
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 103965328695
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5