BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg317880
Length=1242
Score E
Sequences producing significant alignments: (Bits) Value
AT3G10820.2 | Symbols: | Transcription elongation factor (TFII... 989 0.0
> AT3G10820.2 | Symbols: | Transcription elongation factor (TFIIS)
family protein | chr3:3387200-3391003 FORWARD LENGTH=2211
Length=2211
Score = 989 bits (535), Expect = 0.0
Identities = 650/703 (92%), Gaps = 18/703 (3%)
Strand=Plus/Plus
Query 1 ATGAAACCATCGGTTTCGTTGGATAATTGGAGGGACTATTTCCAGCGAGGAGATTCTGAT 60
|||| |||||| ||||||||||||| |||||| || ||||||| ||||||||||||||||
Sbjct 168 ATGAGACCATCTGTTTCGTTGGATACTTGGAGAGAGTATTTCCGGCGAGGAGATTCTGAT 227
Query 61 ATTTTTGGAATCATTGATCATGCGATTATGGTAGCTGCTGCAGATTGGCCAAAGGAGTTT 120
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 228 ATTTTTGGTATCATTGATCATGCGATTATGGTAGCTGCTGCAGATTGGCCAAAGGAGTTT 287
Query 121 AAATCCAGGAGAGATAGAATTGCTGAGCTTCTATTCTCTTGTAGAGTGAGCCGCTGCATT 180
||||||||||| |||||||||||||||||||| |||||||||| |||||| |||||||||
Sbjct 288 AAATCCAGGAGTGATAGAATTGCTGAGCTTCTCTTCTCTTGTAAAGTGAGTCGCTGCATT 347
Query 181 GGTTGTGACCACCTTGAGCTGTCGATTGCTGGAGACGAAGAGGCTAACTATGGCTGTAGG 240
|||||||||||||||||||| ||||| ||||||||||||| || | || || | |
Sbjct 348 GGTTGTGACCACCTTGAGCTCTCGATAGCTGGAGACGAAGCGG----C---GG-TGGA-G 398
Query 241 ACGGTGGAGACAGTTGGCGGCGGCGGTGATAGGGATGATTCTGGTGTTGCGACGGATGAT 300
| || | | ||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 399 ATAGTTG-G--AGTTGGCGGCGGCGGTGATAGGGGTGATTCTGGTGTTGCGACGGGTGAA 455
Query 301 GGTGAAGAGGCTTCTGTGATTGTTGATGAGGTTATGAGGATCAGAGATATCTTGTTGAAC 360
||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 456 GGTGAAGAGGCGTCTGTGAGTGTTGATGAGGTTATGAGGATCAGAGATATCTTGTCGAAC 515
Query 361 AAAGAAGATGAGCCAGATTCTGTGTTACTCGAATCTCTGAGAAAGCTTGAGTCAATGTCT 420
||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 516 AAAGACGATGAGAAAGATTCTGTGTTACTCGAATCTCTGAGAAAGCTTGAGTCAATGTCT 575
Query 421 ATGAATGTGGACATTCTTAAGGATACTGAAATCGGAAAGGCTGTTAATGGTCTGAGGAGA 480
|||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 576 ATGAGTGTGGACATTCTTAAGGATACTGAAATTGGAAAGGCTGTTAATGGTCTGAGGAGA 635
Query 481 CATAGTTCCGATAAGATTAGCAAACTTGCAAAGACTCTTTTCGCAGAGTGGAAGGAG-CT 539
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 636 CATAGTTCCGATAAGATTAGCAAACTTGCAAAGACTCTTTTCGCAGAGTGGAAG-AGGCT 694
Query 540 GGTGGACCAGTGGATGAACACCCC-GAAGGAAATGGCCGGCGCTGAAGGGACGCCAGAGT 598
|||||||||||||||||||||||| || ||||||||| ||| ||||||||||||||||||
Sbjct 695 GGTGGACCAGTGGATGAACACCCCAGA-GGAAATGGCTGGCACTGAAGGGACGCCAGAGT 753
Query 599 CTGC-AAACCTTTCAGTAATTGATGAAGAAGAAGCATTTCCTTCTCCTCCACATGATTTA 657
|| | |||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 754 CT-CTAAACCTTTCAGTAATTGATGAAGAAGAAGCCTTTCCTTCTCCTCCACATGATTTA 812
Query 658 GATATCTATGCACCTGAACCCAATGGATTTGAACTCTCTCAGA 700
|||||||||||||||||||| ||||| |||||||| |||||||
Sbjct 813 GATATCTATGCACCTGAACCTAATGGGTTTGAACTTTCTCAGA 855
Score = 617 bits (334), Expect = 6e-176
Identities = 442/492 (90%), Gaps = 16/492 (3%)
Strand=Plus/Plus
Query 764 AGATCTTAGATTGCCTGGACTGCGATGGAAATCCTCGTCACAGTGTGGAGTCAAAACATG 823
||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 853 AGATCTTAGATTGTTTGGACTGCGATGGAAATCCTCGTCACAGTGTGGAGTCCAAACATG 912
Query 824 AAAGAAAAAT-GCAAAGTAGCGAGAGGAGTAGACCTGAGGGTACAAATGATGCCAATGTG 882
|||| ||||| ||||||||| | | |||| ||||| |||| ||||||||||| ||||||
Sbjct 913 AAAG-AAAATCGCAAAGTAGTGCGGGGAGGAGACCCAAGGGAACAAATGATGCAAATGTG 971
Query 883 GTTGGGGGGTACAACAAGGATCAACACATTA-G-GAG-AGAA---GA---TAGACCTATG 933
|||||| ||||| ||| |||||||| | | | ||| |||| || ||||||||||
Sbjct 972 GTTGGGAGGTACTGCAATGATCAACAGACGAGGAGAGAAGAAGCTGATGTTAGACCTATG 1031
Query 934 AAGCACTCAGCCACCGATTTTGAT-GAGCCTAGAAGACAACCAAAGCAAAGTAGAGAACA 992
|||||||||||||| ||| ||| | ||||||| ||||||| |||||||||||||||||||
Sbjct 1032 AAGCACTCAGCCACAGATGTTG-TCGAGCCTAAAAGACAAACAAAGCAAAGTAGAGAACA 1090
Query 993 AATGGTACCCGCAATCCAAAGAAAACCGCCTATTGTTGCTAAGCAAAAGCGGAAACTAGC 1052
||||||| ||||||||||| ||||||| || |||| || |||||||||||||||| ||
Sbjct 1091 AATGGTATCCGCAATCCAACGAAAACCAACTGCTGTTACTGAGCAAAAGCGGAAACTTGC 1150
Query 1053 TGGACCTCAACAAGATAAACTCAAAGCTCTGGATCCAGACGCAAAGTTTGAGTTTGCAAA 1112
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1151 TGGACCTCAACAAGATAAACTCAAAGCTCTGGATCCAGACTCAAAGTTTGAGTTTGCAAA 1210
Query 1113 GCGGAAACTCCAAGAGAGCTACCAACAACATGAGAATGCCAAGAGACAGAGGACGATACA 1172
|||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 1211 GCGGAAACTCCAAGAGAGCTACCACCAACATGAGAATGCTAAGAGACAGAGGACGATACA 1270
Query 1173 AGTACTGGAAACTATCCCAAAGCAAAATAAAGTTCAGAAACCGCAACTCAAGAGACCC-- 1230
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1271 AGTACTGGAAACTATCCCAAAGCAAAATAAAGTTCAGAAACCGCAACTCAAGAGACCCGC 1330
Query 1231 -ACACGAAGATA 1241
|||||||||||
Sbjct 1331 CACACGAAGATA 1342
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61043862720
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5