BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg317898

Length=594
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G10986.1 | Symbols:  | Protein of unknown function (DUF567) ...   937    0.0  


> AT3G10986.1 | Symbols:  | Protein of unknown function (DUF567) 
| chr3:3444203-3445672 REVERSE LENGTH=594
Length=594

 Score =  937 bits (507),  Expect = 0.0
 Identities = 567/596 (95%), Gaps = 4/596 (1%)
 Strand=Plus/Plus

Query  1    ATGGTGAGTGTTGTGGGAGAAATGTTCTGTAATCCGTACACGACGGAGCTGGTGGTGAGA  60
            |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct  1    ATGGTGAGTGTTGTGGGAGAGATGTTTTGTAATCCGTACACGACGGAGCTGGTGGTGAGA  60

Query  61   AGGCGGCGTGAGAGCCTGAAAAGGGAACGCTACGACGTTTTCGATCTCTCTGACAATCTC  120
            ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct  61   AGGCGGCGTGAGAGCCTGAAAAGGGAACGCTACGACGTTTTCGATCTTTCTAACAATCTC  120

Query  121  ATCTTCACCGTGGAAGGTGGCATTTGGAACATCCGCCGAAAACGTGTCCTCCGTGACGCC  180
            |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct  121  ATCTTCACCGTGGACGGTGGCATTTGGAACATCCGCCGTAAACGTGTCCTCCGTGACGCC  180

Query  181  ACCGGAATTCCTCTTCTCTCCATGCGTACCAAGGGACTTGTAACAATGCGATACAAATGG  240
             |||||||||||||||||||||||||||| |||||||| ||| ||||||||||||| |||
Sbjct  181  GCCGGAATTCCTCTTCTCTCCATGCGTACTAAGGGACTAGTACCAATGCGATACAATTGG  240

Query  241  GAAGTATACAAAGGAGAAAGCACAGAATCTGA-AGATCTTCTTTTCTCAGCAAGGGAACC  299
            ||||||||||||||||| |||||||||||||| | |||||||||||||||||||||||||
Sbjct  241  GAAGTATACAAAGGAGATAGCACAGAATCTGATA-ATCTTCTTTTCTCAGCAAGGGAACC  299

Query  300  AAATCTATTATCCTTTAAACCATCACTTGATGTCACTTTACCGCCACCCCAAAATTCAAC  359
            ||||||||||||||| ||| ||||||||||||||||||||||||||  ||||  ||||||
Sbjct  300  AAATCTATTATCCTTCAAAACATCACTTGATGTCACTTTACCGCCAGACCAATCTTCAAC  359

Query  360  GGACATAAGTAGTATCGCGCCAGATTTTCAAACATTTGGTCGTTATATCGGCTCTTCTTT  419
            ||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct  360  GGACATAAGTAGTGTCGAGCCAGATTTTCAAACATTTGGTCGTTATATCGGCTCTTCTTT  419

Query  420  CAAACTCTTCGAGCCAATTCACAATACTCTTCTTGCTGAGGTGGTTCATGATTTCTCATG  479
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct  420  CAAACTCTTCGAGCCAATTCACAATACTCTTCTTGCTGAGGTGGTTCATGATTTCACATG  479

Query  480  GGGAGGAC-CTATAAAAGGGAGTTACAGCTTCAAAGTGAGAGTGAATCCATATATCGATT  538
            |||||||| | |||||||||||||||||||||||||||||||| ||||||||| | ||||
Sbjct  480  GGGAGGACTC-ATAAAAGGGAGTTACAGCTTCAAAGTGAGAGTTAATCCATATGTGGATT  538

Query  539  TCGCATTTGTGGTGGCGTTACTTGTAATCACAGATGATACTTCCAATCTACGTTAG  594
            |||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct  539  TCGCATTTGTCGTGGCGTTACTTGTAATCACAGATGATACTTCCAATCTACGTTAG  594



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 28583229643


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5