BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg317904
Length=1068
Score E
Sequences producing significant alignments: (Bits) Value
AT2G46730.1 | Symbols: | pseudogene, similar to 68 kDa protein... 239 5e-62
> AT2G46730.1 | Symbols: | pseudogene, similar to 68 kDa protein,
blastp match of 68% identity and 4.7e-17 P-value to GP|7271113|emb|CAB81547.1||AJ276420
68 kDa protein {Cicer arietinum}
| chr2:19200860-19203138 FORWARD LENGTH=2279
Length=2279
Score = 239 bits (129), Expect = 5e-62
Identities = 223/266 (84%), Gaps = 15/266 (6%)
Strand=Plus/Plus
Query 80 ACATTCCCATGGCCTTCTTCTCAAGGTACATAGATGGAACAAAAAACGAGGGCAATGCGG 139
|||||||||||| |||||||| ||| ||||||||||||||| ||| ||| |||||| ||
Sbjct 1406 ACATTCCCATGGATTTCTTCTC-AGGCACATAGATGGAACAACAAATGAGAGCAATGTGG 1464
Query 140 TGGTGAAGCTGAGATCGAACGCTTCTGATATAAACTGGCAAGTGAAGATGGACGGTCGAA 199
||||||| |||||||| |||||||||||||||| |||| ||||||||||||| || ||||
Sbjct 1465 TGGTGAAACTGAGATCAAACGCTTCTGATATAATCTGGGAAGTGAAGATGGAGGGACGAA 1524
Query 200 GACTCACCCAAGGCTGGCAAAAGTTCGCCACCAGTCATGATCTTCAAGTCGGCGACATAG 259
|||||| ||||||||||| |||| | || ||| || | | | |||||||||| |||
Sbjct 1525 GACTCATCCAAGGCTGGCTAAAG--CTCC-CCA-CCA-G--C--CGAGTCGGCGACGTAG 1575
Query 260 TTGTTTTCAGACATGATGGAGATTTATTATTCCAT-GTCACATGCTTG-GGACCAAGCTG 317
||||||||||||||||||||||||| || ||| || ||||| | ||| |||||||||||
Sbjct 1576 TTGTTTTCAGACATGATGGAGATTTGTTGTTC-ATTGTCACTT-CTTTTGGACCAAGCTG 1633
Query 318 CTGTGAAATTCAATATGATAACGATG 343
|| ||| |||| ||||| | |||||
Sbjct 1634 CTATGAGATTCGGTATGA-ACCGATG 1658
Score = 122 bits (66), Expect = 5e-27
Identities = 91/102 (89%), Gaps = 5/102 (5%)
Strand=Plus/Plus
Query 707 CAACACCTGTTCTCCAGTTATGTTCTTCTTCACTTTCAACGAGCCAAAACAGATTCTTGA 766
||||||||||||||||| | |||||||||| | | |||||||||||||||||||||||
Sbjct 1659 CAACACCTGTTCTCCAGCTGTGTTCTTCTT--C-TAAAACGAGCCAAAACAGATTCTTGA 1715
Query 767 CACTAACTCTCACACCATACAACCTCAAGAACG-ATAAACTG 807
|||||||||||||||||||||| ||||| || | ||||||||
Sbjct 1716 CACTAACTCTCACACCATACAATCTCAACAA-GTATAAACTG 1756
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52308967890
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5