BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg317922
Length=1614
Score E
Sequences producing significant alignments: (Bits) Value
AT3G11330.1 | Symbols: PIRL9 | plant intracellular ras group-re... 1284 0.0
AT5G05850.1 | Symbols: PIRL1 | plant intracellular ras group-re... 584 8e-166
> AT3G11330.1 | Symbols: PIRL9 | plant intracellular ras group-related
LRR 9 | chr3:3551974-3554763 REVERSE LENGTH=1924
Length=1924
Score = 1284 bits (695), Expect = 0.0
Identities = 765/799 (96%), Gaps = 4/799 (1%)
Strand=Plus/Plus
Query 818 CGATTCCTGATTCAATAGCTGGATTGCATAGTCTTGTTGAACTGGATGTCTCCACGAATT 877
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 772 CGATTCCTGATTCAATTGCTGGATTGCATAGTCTTGTTGAACTGGATGTCTCCACGAATT 831
Query 878 CTCTGGAGACATTACCTGATTCTATCGGTTTACTGTCCAAACTGAAAATCCTGAATGTTT 937
|||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 832 CTCTGGAGACATTACCTGATTCCATCGGTTTACTGTCCAAACTAAAAATCCTGAATGTTT 891
Query 938 CGACTAACAAGCTCACATGCTTGCCTGACTCCATCTGCCGCTGTGGGTCGTTGGTTATCT 997
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 892 CGACTAACAAGCTCACATCCTTGCCTGACTCCATCTGCCGCTGTGGGTCGTTGGTTATCT 951
Query 998 TAGACGTGAGCTTCAACCGTCTCACCTACTTACCAACCAACATTGGTC-TCGAGCTAGTG 1056
| |||||||||||||||||||||||||||||||| |||||||| |||| | |||||||||
Sbjct 952 TGGACGTGAGCTTCAACCGTCTCACCTACTTACCGACCAACATCGGTCCT-GAGCTAGTG 1010
Query 1057 AATCTAGAAAAGCTCCTGGTTCAGTATAACAAGATCCGATCATTCCCGACCAATATAGGC 1116
||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||
Sbjct 1011 AATCTAGAAAAGCTCCTGGTTCAGTATAACAAGATCCGATCCTTCCCGACCAGTATAGGC 1070
Query 1117 GAAATGAGATCCCTAAAACACTTGGACGCCCACTTCAACGAACTTCATGGCCTTCCTGAT 1176
||||||||||||||||||||| | ||||||||||||||||||||| | ||||||||||||
Sbjct 1071 GAAATGAGATCCCTAAAACACCTCGACGCCCACTTCAACGAACTTAACGGCCTTCCTGAT 1130
Query 1177 TCTTTCGTGTTGCTCACAAACCTCGAGTACTTAAACCTAAGCAGCAACTTCAGTGATCTC 1236
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1131 TCTTTCGTGTTGCTCACAAATCTCGAGTACTTAAACCTAAGCAGCAACTTCAGTGATCTC 1190
Query 1237 AAGGATCTCCC-TTCCTCATTTGGGGACCTCATAAGCCTCCAAGAACTCGACTTGAGTAA 1295
||||||||||| ||| ||||| || || ||||||||||||||||||||||||||||||||
Sbjct 1191 AAGGATCTCCCATTC-TCATTCGGCGAACTCATAAGCCTCCAAGAACTCGACTTGAGTAA 1249
Query 1296 CAACCAAATCCATGCCCTCCCAGACACTTTTGGCACACTCGATAGCCTGACCAAACTAAA 1355
||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||
Sbjct 1250 CAACCAAATCCATGCCCTCCCTGACACTTTTGGCACACTTGATAGCCTGACCAAACTGAA 1309
Query 1356 TGTGGATCAGAACCCGCTCGTGGTCCCACCTGAGGAAGTGGTGAAGGAAGGTGTTGAAGC 1415
||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 1310 TGTGGATCAGAACCCGCTCGTCGTCCCACCCGAGGAAGTGGTGAAGGAAGGTGTTGAAGC 1369
Query 1416 TGTGAAGACGTACATGGGTCagagaaggatcagaatgttggaagaggaagagaagaagaa 1475
||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 1370 TGTGAAGACGTACATGGGTCAGAGAAGGATCAGTATGTTGGAAGAAGAAGAGAAGAAGAA 1429
Query 1476 aatggaggaggagatggagCAGGCAAACGCCGGGTGGCTCACACGAACCACATCGAAACT 1535
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1430 AATGGAGGAAGAGATGGAGCAGGCAAACGCCGGGTGGCTCACACGAACCACATCGAAGCT 1489
Query 1536 GAAAACTTATGTCGCAGATGTTTCAGAGTATCTCGGAACAAATTCTCCTCGAGACCCTTA 1595
|||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1490 GAAAACATATGTCGCAGATGTTTCAGAGTATCTCGGATCAAATTCTCCTCGAGACCCTTA 1549
Query 1596 CCTTGAGCGACAACTATGA 1614
|||||| ||||| ||||||
Sbjct 1550 CCTTGAACGACAGCTATGA 1568
Score = 1050 bits (568), Expect = 0.0
Identities = 676/724 (93%), Gaps = 23/724 (3%)
Strand=Plus/Plus
Query 1 ATGGCGGCAGAACCTAACCCTAAGAATTTCCCTGTCCTCTCTTACGTCTTGGCTCGTCTC 60
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 69 ATGGCGGCAGAACCTAACCCTAAGAATTTCCCTGTCCTCTCTTATGTCTTGGCTCGTCTC 128
Query 61 CCTTCTTTCACCGCCAAAtccccttcctcctcctcctccgttcctccctTTGATATCGAA 120
||||||||||||||||||| || ||| |||||||||||||||||||| || ||||||
Sbjct 129 CCTTCTTTCACCGCCAAAT--CC--CCT--TCCTCCTCCGTTCCTCCCTTCGACATCGAA 182
Query 121 CAACCACcatcatcatcatcatcatcatcatcatcaAGCCAATCGATCGAAATCGTTACT 180
|||||| | || | ||||||||||||||||||| | || | || ||||| |||
Sbjct 183 CAACCA-C--CA-C--CATCATCATCATCATCATC--G---AT---T-GAGATCGTCACT 227
Query 181 CAGATGCCTCATTTAACACAACCAGATGTACTCGCTTCAATGACCAGTGCGATCTCTGAC 240
||||||||||| ||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 228 CAGATGCCTCACTTAACACAACCAGATGTTCTCGCTTCAATGACAAGTGCGATCTCTGAC 287
Query 241 GTCGCCGAGACTCGATCTATCCTTCGAACCCTAGGACCTAGACCTGATCACGAGTCCGTC 300
|||||||||||||||||||||||||||||||||||||||||||| |||||||| || |||
Sbjct 288 GTCGCCGAGACTCGATCTATCCTTCGAACCCTAGGACCTAGACCAGATCACGAATCAGTC 347
Query 301 GACAAGGCTCGTGCTAAGCTCTCGGAAATCGAATCGTTCTTATCTGAATCGTTTGAGGAT 360
|| |||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 348 GATAAGGCTCGTGCTAAACTCTCGGAAATCGAATCGTTCTTATCTGAATCGTTCGAGGAT 407
Query 361 ATCGCGCTT-ACCGATTCGGCGGCGAAAGATGAGAAGAGGAGACAAGAGATGGATCAGGA 419
|||||| || |||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 408 ATCGCG-TTAACCGATGCGGCGGCGAAAGATGAGAAGAGGAGACAAGAGATGGATCAGGA 466
Query 420 GAAGACTTGGTGTGAGTCGGTTTTGAAGCTTGATGAGGTTCATGCTTCGTATGAGAAGCT 479
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 467 GAAGACTTGGTGTGAGTCGATTTTGAAGCTTGATGAGGTTCATGCTTCGTATGAGAAGCT 526
Query 480 TTTGAAAGAAGCAGAGGAGAGGCTTGTCAGGATTTATGAATCTGCTGAGAAGAATGCGGC 539
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 527 TTTGAAAGAAGCAGAGGAGAGGCTTGTTAGGATTTATGAATCTGCTGAGAAGAATGCGGC 586
Query 540 GGAGGATGAGGAGAATGTTGCGGCGGTGGAGGTTAATGAGGAGGTTGTTGGGATATTGCA 599
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 587 GGAGGATGAGGAGAATGTTGCGGCTGTGGAGGTTAATGAGGAGGTTGTTGGGATATTGCA 646
Query 600 GCACGCTTCGGCCAATCCGGTGGATCGTGTGGATTTGTCTGGGAGGAAATTGAGATTGCT 659
||| ||||| || ||||||||||||||||| |||||||||||||||||| |||| |||||
Sbjct 647 GCATGCTTCTGCTAATCCGGTGGATCGTGTTGATTTGTCTGGGAGGAAACTGAGGTTGCT 706
Query 660 ACCTGAAGCTTTTGGGAGGATTCAAGGGTTGCTTGTTCTTAATCTTTCCAACAATAAGCT 719
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 707 ACCTGAAGCTTTTGGGAGGATTCAAGGGTTGCTTGTTCTTAATCTCTCCAACAATAAGCT 766
Query 720 TGAG 723
||||
Sbjct 767 TGAG 770
> AT5G05850.1 | Symbols: PIRL1 | plant intracellular ras group-related
LRR 1 | chr5:1762405-1764678 REVERSE LENGTH=1876
Length=1876
Score = 584 bits (316), Expect = 8e-166
Identities = 656/818 (80%), Gaps = 31/818 (4%)
Strand=Plus/Plus
Query 814 CAGGCGATTCCTGATTCAATAGCTGGATTGCATAGTCTTGTTGAACTGGATGTCTCCACG 873
||||| ||||||||||| |||||||| ||||||| ||| | ||||| ||||| |||||
Sbjct 787 CAGGCTATTCCTGATTCGATAGCTGGTTTGCATAACCTTCTCGAACTCGATGTTTCCACT 846
Query 874 AA-TTCTCTGGAGACATTACCTGATTCTATCGGTTTACTGTCCAAA-CTGAAAATCCTGA 931
|| ||| |||||||||||||| ||||| ||||||||| ||| |||| |||| || |||
Sbjct 847 AATTTC-CTGGAGACATTACCAGATTCGATCGGTTTATTGT-CAAAGTTGAAGATTTTGA 904
Query 932 ATGTTTCGACTAACAAGCTCACATGC-TTGCCTGACTCCATCTGCCGCTGTGGGTCGTTG 990
|||| || |||||| |||||| | || || || |||||||||| ||||| ||||||
Sbjct 905 ATGTCTCTTGTAACAAACTCACA-ACTTTACCAGATTCCATCTGCCATTGTGGATCGTTG 963
Query 991 GTTATCTTAGACGTGAGCTTCAACCGTCTCACCTACTTACCAACCAACATTGG-TCTCGA 1049
||| |||| || | ||||| |||| |||||||||||||||||| ||||| || | ||||
Sbjct 964 GTTGTCTTGGATGCGAGCTACAACAATCTCACCTACTTACCAACAAACATCGGAT-TCGA 1022
Query 1050 GCTAGTGAATCTAGAAAAGCTCCTGGTTCAGTAT-AACAAGATCCGATCATTCCCGAC-- 1106
||||||||| ||||| |||||| || | || | | ||||| ||| ||||||| || ||
Sbjct 1023 GCTAGTGAAACTAGAGAAGCTCTTGATCCA-TCTCAACAAAATCAGATCATTACCAACTT 1081
Query 1107 CAATATAGGCGAAATGAGATCCCTAAAAC-ACTTGGACGCCCACTTCAACGAACTTC-AT 1164
| || | || |||||||||| ||| | | || | || || ||||||||||||| || ||
Sbjct 1082 CCAT-T-GGTGAAATGAGAT-CCTTACGCTACCTCGATGCACACTTCAACGAAC-TCAAT 1137
Query 1165 GGCCTTCCTGATTCTTTCGTGTTGCTCACAAACCTCGAGTA-CTTAAACCTAAGCAGCAA 1223
|| || || ||||||||| | ||||||| ||||||||||| ||| ||||| ||||| ||
Sbjct 1138 GGTCTCCCAAATTCTTTCGGGCTGCTCACGAACCTCGAGTACCTT-AACCTGAGCAGTAA 1196
Query 1224 CTTCAGTGATCT-CAAGGATCTCCCTTCCTCATTTGGGGACCTCATAAGCCTCCAAGAAC 1282
|||||| ||||| ||| ||||||||| | ||||| || || |||||||||||||||||||
Sbjct 1197 CTTCAGCGATCTCCAA-GATCTCCCTGCTTCATTCGGAGATCTCATAAGCCTCCAAGAAC 1255
Query 1283 TCGACTTGAGTAACAACCAAATCCATGCCCTCCCAGACACTTTTGGCACACTCGAT-AGC 1341
|||||||||| |||||||| |||||| | || |||||| |||||||||| |||| | | |
Sbjct 1256 TCGACTTGAGCAACAACCAGATCCATTCTCTTCCAGACGCTTTTGGCACGCTCG-TGAAC 1314
Query 1342 CTGACCAAACTAAA-TGTGGATCAGAACCCGCTCGTGGTCCCACCTGAGGAAGTGGTGAA 1400
|||||||||| || | |||| || |||||||| || ||||| ||||| ||||| |||||
Sbjct 1315 TTGACCAAACTGAACT-TGGACCAAAACCCGCTTGTTGTCCCGCCTGATGAAGTCGTGAA 1373
Query 1401 GGAAGGTGTTGAAGCTGTGAAGACGTACATGGGTCagagaaggatcagaatgttggaaga 1460
||||||| || || || || | ||| |||||| ||||| || |||| |||||||||||
Sbjct 1374 ACAAGGTGTGGATGCGGTTAAAATGTATATGGGTAAGAGATGGGTCAGCATGTTGGAAGA 1433
Query 1461 ggaagagaagaaga--aa-atggaggaggagatggagCAGGCAAACGCCGGGTGGCTCAC 1517
||||||||||| | || ||| |||| |||||||| ||| ||||| ||| ||||||||
Sbjct 1434 GGAAGAGAAGATGGCGAATATGAAGGATGAGATGGATCAGACAAACACCGATTGGCTCAC 1493
Query 1518 ACGAACCACATCGAAACTGAAAACTTATGTCGCAGATGTTTCAGAGTATCTCGGAACAAA 1577
|||||||| ||||| |||||||| ||||| | || || || |||||||| || | ||
Sbjct 1494 CCGAACCACCTCGAAGCTGAAAACGTATGTTACTGAGGTCTCGGAGTATCTTGGCTCGAA 1553
Query 1578 TTCTCCTCGAGACCCTTACCTTGAGC-GACAACTATGA 1614
| | ||| |||| ||||||||||| | | || ||||||
Sbjct 1554 TCCGCCTAGAGATCCTTACCTTGACCAG-CAGCTATGA 1590
Score = 357 bits (193), Expect = 2e-97
Identities = 574/749 (77%), Gaps = 61/749 (8%)
Strand=Plus/Plus
Query 1 ATGGCGGCAGAACCTAACCCTAAGAATTTCCCTGTCCTCTCTTACGTCTTGGCTCGTCTC 60
|||||| | || | |||||||||||| |||||||| |||||||| ||||||| |||||||
Sbjct 70 ATGGCGACGGAGCTTAACCCTAAGAACTTCCCTGTTCTCTCTTATGTCTTGGATCGTCTC 129
Query 61 CCTTCTTTCACCGCCAAAtccccttcctcctcctcctccgttcctccctTTGATATCGAA 120
||||| |||||||||||| |||| || |||| | | | || ||| ||||
Sbjct 130 CCTTCATTCACCGCCAAA------TCCT-CT--TCCT-C--T--T-CC---GATGTCGAG 171
Query 121 CAACCACcat-catcat-c-atcatcatcatcatcatcaAGCCAATCGATCGAAATCGTT 177
| |||||||| || || | ||| | || |||||||||| ||| || ||||| || ||
Sbjct 172 CCACCACCATCCA-AATCCGATC--CTTCTTCATCATCAAACCACTCTATCGAGATAGTG 228
Query 178 ACTCAGATGCCTCATTTAACACAACCAGATGTACTCGCTTCAATGACCAGTGCGATCTCT 237
|||||||||||||| || | || || ||||| || || || ||||| | || | | |
Sbjct 229 ACTCAGATGCCTCACTTGGCTCATCCTGATGTTCTTGCCTCCATGACTAACGCAACCGCC 288
Query 238 GACGTCGC-CGAGACTCGATCTATCCTTCGAACCCTAGGACCTAGACCTGATCACGAGTC 296
||||| | | |||| |||||| | ||||||||||||||||| ||||| |||||||| |
Sbjct 289 GACGTTTCTC-AGACCCGATCTGTTCTTCGAACCCTAGGACCAAGACCCGATCACGAAAC 347
Query 297 CGTCGACAAG-GCTCGTGCTAAGCTCTCG-GAAATCGAATCGTTC-TTATCTGAATCGTT 353
||||||| || |||||||||| |||| || || ||||| || || || || ||||| ||
Sbjct 348 CGTCGAC-AGAGCTCGTGCTAGGCTC-CGTGAGATCGACGCG-TCTTTGTCGGAATC-TT 403
Query 354 T-G-AG-GAT--ATCGCGCT--TACCG--ATT--C--GGCGGCGAAAGATGAGAAGAGGA 400
| | || ||| || | || || || ||| | ||||| ||| || |||||||||
Sbjct 404 TCGAAGAGATCGCTCTCTCTCCTAACGATATTGACGTGGCGGAGAAGGAACAGAAGAGGA 463
Query 401 GACAAG-AGATGGATCAGGAGAAGACTTGGTGTGAGTCGGT-TTTGAAGCTTGATGAGGT 458
|| ||| | |||| || ||||||| ||||| | | ||| | || |||||| | ||| |
Sbjct 464 GAGAAGCTG-TGGAGCAAGAGAAGATTTGGTATAAATCGATCCTT-AAGCTTAACGAGCT 521
Query 459 TCATGCTTCGTATGAGAAGCTTTTGAAAGAAGCAGAGGAGAGGCTTGTCAGGATTTATGA 518
||||| || ||||||||||||||||||||||||||||||||||| || ||||| |||||
Sbjct 522 TCATGAATCTTATGAGAAGCTTTTGAAAGAAGCAGAGGAGAGGCTCGTGAGGATCTATGA 581
Query 519 ATCTGCTGAGAAGAATGC-G--GCGGAGGATGAGGAG-AATGTTGCGGCGGTGGAGGTTA 574
||||| ||||||||||| | |||| || |||||| || | ||||| ||| || || |
Sbjct 582 GTCTGCCGAGAAGAATGCTGCCGCGGTGGCGGAGGAGGAA-GCTGCGGAGGTTGAAGTCA 640
Query 575 ATGAGGAGGTTGTTGGG-ATATTGCAGCACGCTTCGGCCAATCCGGTGGATCGTGTGGAT 633
|||| |||||||| | | ||| |||| || ||| ||| ||||| |||| || || |||
Sbjct 641 ATGAAGAGGTTGT-GAGTATACTGCAACAAGCTGCGGAGAATCCATTGGACCGAGTTGAT 699
Query 634 TTGTCTGGGAGGAAATTGA-GATTGCTACCTGAAGCTTTTGGGAGGATTCAAGGGT-TGC 691
|||||||| ||||||||| | ||||| |||||||| ||||| | ||||||||| | | |
Sbjct 700 TTGTCTGGTCGGAAATTGAAG-TTGCTTCCTGAAGCATTTGGAAAGATTCAAGG-TCTCC 757
Query 692 TTGTTCTTAATCTTTCCAACAATAAGCTT 720
||||||||||||| | |||||| |||||
Sbjct 758 TTGTTCTTAATCTCTATAACAATCAGCTT 786
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79718465460
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5