BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg317933
Length=1317
Score E
Sequences producing significant alignments: (Bits) Value
AT3G11490.1 | Symbols: | rac GTPase activating protein | chr3:... 2074 0.0
> AT3G11490.1 | Symbols: | rac GTPase activating protein | chr3:3617523-3619567
REVERSE LENGTH=1308
Length=1308
Score = 2074 bits (1123), Expect = 0.0
Identities = 1262/1325 (95%), Gaps = 25/1325 (2%)
Strand=Plus/Plus
Query 1 ATGGCTAAAGTTCTTAAATCGAGCCAATCATGTCATTTCCCTTCACCTTCAAGCtcttct 60
|||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCTAAAGTTCTAAAATCGAGCCAATCATGTCATTTCCCTTCACCTTCAAG------- 53
Query 61 tcttcttcttctACATCATGT---GGAGGCAATGATGGTGGTAATAGAGACCCACATTCT 117
| |||||||||||||||||| ||||||||||||||| ||||||||||||||||||||
Sbjct 54 -C-TCTTCTTCTACATCATGTGGAGGAGGCAATGATGGTAGTAATAGAGACCCACATTCT 111
Query 118 CCTTTTAACATTTCTCGTCGCgagg-a-a-gaagaagaggaggagagaagcgagaaagag 174
|||||||||||||||||||| |||| | | ||||||||||| ||||||||||||||||||
Sbjct 112 CCTTTTAACATTTCTCGTCGTGAGGAAGAGGAAGAAGAGGAAGAGAGAAGCGAGAAAGAG 171
Query 175 agggaaagaTTCGAGCTTTCTTCGGCATTGGAGATT-TTAGTTTCTGCTATTAGAAGGTC 233
|| ||||||||||||||||| || |||||||||||| || ||||||||||||||||||||
Sbjct 172 AGAGAAAGATTCGAGCTTTCATCTGCATTGGAGATTCTT-GTTTCTGCTATTAGAAGGTC 230
Query 234 TGTGATTGGTGGGTGTGTTGGTGAAGAGGATCTTTGTTCAATGGAGATTGGTGTTCCCAC 293
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 231 TGTGATTGGTGGGTGTGTTGGTGAAGAGGATCTTTGTTCAATGGAGATTGGTGTTCCTAC 290
Query 294 AGATGTTAGACATGTCGCTCATGTCACCTTTGATCGTTTCCATGGCTTCCTTGGCTTGCC 353
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 291 AGATGTTAGACATGTCGCTCATGTTACCTTTGATCGTTTCCATGGCTTCCTTGGCTTGCC 350
Query 354 TGTTGAGTTTGAACCTGAAGTCCCAAGACGAGCTCCTAGTGCAAGTGCTACCGTGTTTGG 413
|||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 351 TGTTGAGTTTGAACCTGAAGTCCCTAGACGAGCTCCTAGTGCAAGTGCAACCGTGTTTGG 410
Query 414 AGTCTCTACCGAGTCAATGCAGCTATCATATGATACTAGAGGGAACGTCGTGCCTACTAT 473
||||||||| || |||||||||||||| |||||||||||||||||| |||||||||| ||
Sbjct 411 AGTCTCTACTGAATCAATGCAGCTATCTTATGATACTAGAGGGAACATCGTGCCTACGAT 470
Query 474 ACTTTTGATGATGCAGAGTCACTTGTACAGTAGAGGCGGATTGCGGGTAGAAGGAATTTT 533
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 471 ACTTTTGATGATGCAGAGTCACTTGTACAGTAGAGGCGGATTGCGGGTAGAGGGAATTTT 530
Query 534 CAGGATTAATGGTGAGAATGCTCAAGAAGAGTACATAAGGGAAGAGTTGAATAAAGGTAT 593
|||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||
Sbjct 531 CAGGATTAATGGTGAGAATGGTCAAGAAGAGTACATAAGAGAAGAGTTGAATAAAGGTAT 590
Query 594 TATACCTGATAACATCGATGTCCACTGCTTAGCAAGTCTCATTAAGGCTTGGTTTAGGGA 653
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 591 TATACCTGATAACATTGATGTCCACTGCTTAGCAAGTCTCATTAAGGCTTGGTTTAGGGA 650
Query 654 ACTTCCTAGTGGCGTTTTGGATTCACTTTCACCAGAACAAGTAATGGAGTCTGAGAGTGA 713
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 651 ACTTCCTAGTGGCGTTTTGGATTCACTTTCACCAGAGCAAGTAATGGAGTCTGAGAGTGA 710
Query 714 AGATGAGTGTGTGGAACTTGTAAGGCTTCTCCCTTCAACAGAAGCGTCTTTGTTAGATTG 773
||||||||||||||| |||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 711 AGATGAGTGTGTGGAGCTTGTAAGGCTTCTTCCTTCAACAGAAGCTTCTTTGTTAGATTG 770
Query 774 GGCTATCAATCTAATGGCTGATGTTGTTGAGATGGAACAACTTAACAAGATGAATGCTCG 833
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 771 GGCTATCAATCTAATGGCTGATGTTGTTGAGATGGAACAACTTAACAAGATGAATGCTCG 830
Query 834 AAACATTGCAATGGTTTTTGCACCTAACATGACTCAGATGTTGGATCCATTGACGGCTCT 893
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 831 AAACATTGCAATGGTTTTTGCACCTAACATGACTCAGATGTTGGATCCATTGACGGCTCT 890
Query 894 AATGTATGCTGTGCAAGTTATGAACTTTCTTAAAACACTTATTGTGAAGACGCTTAAAGA 953
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 891 AATGTATGCTGTGCAAGTTATGAACTTTCTGAAAACACTTATTGTGAAGACGCTTAAAGA 950
Query 954 CCGAAAAGAATCTCGAGATAAGTTGGTTCCAGCCTCAAATCCGAGTCCTCGGGACCATAA 1013
||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 951 CCGAAAAGAATCTAGAGATAAGTTGGTTCCAGCCTCAAATCCAAGTCCTCGGGACCATAA 1010
Query 1014 TGGTGATCAGAGCAGCAGTAGACAGTTGTTGCATCTCATGAAAGCTAACAAGGAGGAAAG 1073
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1011 TGGTGATCAGAGCAGCAGTAGACAGTTGTTACATCTCATGAAAGCTAACAAGGAGGAAAC 1070
Query 1074 TTTAGACAACTATGAGGCGGagatgaaagacaaagaagagtctgcagatgaagaagaaga 1133
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1071 TTTAGACAACTTTGAGGCGGAGATGAAAGACAAAGAAGAGTCTGCAGATGAAGAAGAAGA 1130
Query 1134 agaagaagaaTGTGCGGAATCTCG-AGAACTTGTTGACATAAAAAATTCTTCTCTGGTTA 1192
|||| ||||| |||||| | ||||||||||||||||||||| |||||||||||||
Sbjct 1131 AGAA------TGTGCCGAATCT-GTAGAACTTGTTGACATAAAAAAGTCTTCTCTGGTTA 1183
Query 1193 ACAGCAACAATGGAGGTTTTGGACAGAAACACAATGGTTGGGAGGAGCAGAGAACCATGT 1252
| | || || ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1184 ATAACAGCAGTGGAGGTTTTGGACAGAAACACATTGGTTGGGAGGAGCAGAGAACCATGT 1243
Query 1253 CGAAAGCGAGTAGTATTGTGGGACGTGTGAACTACAGAGTTGAGCTATTCGAAGCTTGGC 1312
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1244 CGAAAGCGAGTAGTATTGTGGGACGTGTGAATTACAGAGTTGAGCTATTCGAAGCTTGGC 1303
Query 1313 GATGA 1317
|||||
Sbjct 1304 GATGA 1308
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64808903595
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5