BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg317949
Length=1470
Score E
Sequences producing significant alignments: (Bits) Value
AT3G11680.1 | Symbols: | Aluminium activated malate transporte... 2235 0.0
> AT3G11680.1 | Symbols: | Aluminium activated malate transporter
family protein | chr3:3686995-3689329 REVERSE LENGTH=1467
Length=1467
Score = 2235 bits (1210), Expect = 0.0
Identities = 1387/1473 (94%), Gaps = 9/1473 (1%)
Strand=Plus/Plus
Query 1 ATGGATTTGAATGCTCAAGAGAAGAAAGCAGGGTTCTTTCAAAGGCTTAAGGAATTCCCT 60
|||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct 1 ATGGATTTGAATGCTCAAGAGAAGAAAGCAGGGTTCTTTCAAAGGCTTCAGGATTTCCCT 60
Query 61 AGGAAGCTCAAAGACGGTGTCACCAAACGCATGAAGAATGTGAAAAAGTTTGGGAAAGAT 120
|| ||||||||||||| ||||||||||||| | ||||||||| ||||||||| |||||||
Sbjct 61 AGCAAGCTCAAAGACGATGTCACCAAACGCGTAAAGAATGTGCAAAAGTTTGCGAAAGAT 120
Query 121 GATCCAAGACGAATCATTCACTCCATGAAAGTTGGAGTTGCTCTCACATTAGTATCATTG 180
||||||||||| ||||| |||||||||||||| || ||||||||||||||||| ||||||
Sbjct 121 GATCCAAGACGGATCATCCACTCCATGAAAGTGGGGGTTGCTCTCACATTAGTGTCATTG 180
Query 181 TTGTACTATGTGCGAGCACTCTACATCAGCTTCGGGGTCACGGGTATGTGGGCGATACTT 240
||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||
Sbjct 181 TTGTACTATGTGCGACCACTCTACATCAGCTTTGGGGTCACGGGTATGTGGGCGATACTT 240
Query 241 ACCGTAGTCGTGGTCTTCGAATTCACTGTTGGTGGAACACTTTCCAAAGGTTTAAACAGA 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 ACCGTAGTCGTGGTCTTCGAATTCACTGTTGGTGGAACACTTTCCAAAGGTTTAAACAGA 300
Query 301 GGTTTTGCGACATTAATAGCAGGAGCCTTAGGGGTTGGGGCAGTACACCTTGCTCGTTTC 360
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GGGTTTGCAACATTAATAGCAGGAGCCTTAGGGGTTGGGGCAGTACACCTTGCTCGTTTC 360
Query 361 TTTGGGCATCAAGGAGAGCCCATAGTTCTTGGGATCTTAGTGTTCTCACTAGGCGGAGCT 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 361 TTTGGGCATCAAGGAGAGCCCATAGTTCTTGGGATCTTAGTGTTCTCACTAGGCGCAGCT 420
Query 421 GCAACATTTTCGCGGTTTTTCCCTA-GGATCAAACATAGATATGACTACGGTGC-CTTGA 478
||||||||||||||||||||||| | |||| ||||| ||||||||||| ||||| || ||
Sbjct 421 GCAACATTTTCGCGGTTTTTCCC-ACGGATTAAACAGAGATATGACTATGGTGCTCT-GA 478
Query 479 TATTCATACTCACATTTAGTTTCGTTGCCATTTCGGGTTACCGTACAGATGAGATATTGA 538
|||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 479 TATTCATACTCACATTTAGTTTCGTTGCGATTTCGGGTTACCGTACAGATGAAATATTGA 538
Query 539 TTATGGCATACCAAAGGCTATCGACTATTCTTATCGGTGGCACGATCTGCATCCTTGTGT 598
|||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 TTATGGCATATCAAAGACTATCGACTATTCTTATCGGTGGCACGATCTGCATCCTTGTGT 598
Query 599 CGATTTTCATTTGTCCTGTATGGGCTGGCGAAGATCTTCACAAGATGATTGCTAACAACA 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 CGATTTTCATTTGTCCTGTATGGGCTGGCGAAGATCTTCACAAGATGATTGCTAACAACA 658
Query 659 TAAACAAACTTGCTAAGTACCTAGAAGGTTTCGAGAGTGAATATTTTCAACCGGAGAAGA 718
| |||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||
Sbjct 659 TTAACAAACTTGCTAAGTACCTAGAAGGATTCGAGGGTGAATATTTTCAACCGGAGAAGA 718
Query 719 TTTCAAAGGAGACAAACTCGTGTGTCCGAGAATATAAGAGCATTCTGACATCAAAAAGCA 778
||||||||||||||| ||||||||| |||||||| || |||||||| |||||||||||||
Sbjct 719 TTTCAAAGGAGACAAGCTCGTGTGTTCGAGAATACAAAAGCATTCTAACATCAAAAAGCA 778
Query 779 CTGAAGATACTTTGGCGAATCTTGCTAGGTGGGAACCAGGGCATGGCCGTTTCAGGTTAC 838
||||||||| ||||||||||||||| || ||||||||||||||||| |||||||||||||
Sbjct 779 CTGAAGATAGTTTGGCGAATCTTGCAAGATGGGAACCAGGGCATGGACGTTTCAGGTTAC 838
Query 839 GGCATCCGTGGAAAAAGTACTTGAAAATTGCAGGTCTCGTTCGCCAATGTGCCTTCCATT 898
|||| ||||||||||||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct 839 GGCACCCGTGGAAAAAGTACTTGAAAATTGCAGGACTCGTTCGCCAATGTGCCGTCCATT 898
Query 899 TCGAAATCCTCAATGGCTACGTTCTCTCTAACGATAAGGCACCACAAGAATTCGACAGTA 958
| ||||||||||||||||||||||| || |||||||||||||||||||||||||| ||||
Sbjct 899 TAGAAATCCTCAATGGCTACGTTCTTTCAAACGATAAGGCACCACAAGAATTCGAAAGTA 958
Query 959 AGTTTCAAGAGCCAATCACGATTATGAACAGAGAAGTTGGTGAAGCCCTAAAAGCCATGG 1018
|| |||||||||||||||||| ||||| |||||||||||||||||||||||||||||| |
Sbjct 959 AGATTCAAGAGCCAATCACGACTATGAGCAGAGAAGTTGGTGAAGCCCTAAAAGCCATAG 1018
Query 1019 CCAAATCTATCAAGACAATGAGCAAAGACAGTGCTTGTGTGAACTCACACATTGACAACT 1078
|||||||||| || |||||||| || || ||||||||||||||| |||||||||||||||
Sbjct 1019 CCAAATCTATTAAAACAATGAGGAACGATAGTGCTTGTGTGAACGCACACATTGACAACT 1078
Query 1079 CCAAAAAGGCCATTGTAAACTTAAGGATTGCACTCAAATCTTCTTATCCAGACACAGAGA 1138
|||||||||||||| |||||||| ||||||||||||||||||||||||||| ||| | |
Sbjct 1079 CCAAAAAGGCCATTAAAAACTTAAAGATTGCACTCAAATCTTCTTATCCAGAGACATATA 1138
Query 1139 AAGATCTTTTGGAGATCATTCCCGGAGTCACAATGGCATCAATCCTGATCGAGGTTGTGA 1198
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1139 AAGATCTTTTGGAGATCATTCCCGGAGTCACAATGGCATCAATCCTGATCGAGGTCGTGA 1198
Query 1199 ATTGCGTCGAGAAGATCT-CTGAGGCTGTCGAAGAATTCTCTGGTCTTGCACATTTCAAA 1257
|||||||||||||||||| | |||||||| ||||||||||||||||||||||||||||||
Sbjct 1199 ATTGCGTCGAGAAGATCTAC-GAGGCTGTGGAAGAATTCTCTGGTCTTGCACATTTCAAA 1257
Query 1258 GAGACTTTGGATCCAAAATTATCAGCGGAGATAGGACAACATCAGTTACTCCACAGGGGA 1317
|||||||||||| ||||| ||||||||||||||||||||||||| |||||||||||||||
Sbjct 1258 GAGACTTTGGATTCAAAACTATCAGCGGAGATAGGACAACATCAATTACTCCACAGGGGA 1317
Query 1318 AGTGTAAAGCCGGTTCCAGATGGCGACAACGAGAAAGAAGACAATAGCTCGTCGTCTCAT 1377
||||||||||||||| ||||||||||||||||||||||||||||||||| | ||| ||
Sbjct 1318 TGTGTAAAGCCGGTTCTAGATGGCGACAACGAGAAAGAAGACAATAGCTCAT-GTC--AT 1374
Query 1378 GTTCTTATCCCTGTCCATGATGAAGAACAGCCACCAACGGCCACTGCGAAGAACGTTTTG 1437
||||||||| ||||||||||||||| | | | ||| |||||||| |||||||||||||||
Sbjct 1375 GTTCTTATCACTGTCCATGATGAAGGATATCTACCGACGGCCACCGCGAAGAACGTTTTG 1434
Query 1438 GGAGCAGAGAAGACGAGAGTAGATGTTGTGTGA 1470
|||||||||||||| ||||||||| ||||||||
Sbjct 1435 GGAGCAGAGAAGACTAGAGTAGATATTGTGTGA 1467
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72489586980
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5