BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg317988
Length=909
Score E
Sequences producing significant alignments: (Bits) Value
AT3G12070.1 | Symbols: AtRGTB2, RGTB2 | RAB geranylgeranyl tran... 1184 0.0
AT5G12210.1 | Symbols: AtRGTB1, RGTB1 | RAB geranylgeranyl tran... 898 0.0
> AT3G12070.1 | Symbols: AtRGTB2, RGTB2 | RAB geranylgeranyl transferase
beta subunit 2 | chr3:3845211-3847274 REVERSE LENGTH=1297
Length=1297
Score = 1184 bits (641), Expect = 0.0
Identities = 709/742 (96%), Gaps = 4/742 (1%)
Strand=Plus/Plus
Query 170 GTGGCTTTGCCGGTAATACTGGACATGATCCGCATGTTATATATACACTCAGTGCTGTAC 229
|||||||||||||||||||||| ||||||||||||||| | |||||||||||||||||||
Sbjct 349 GTGGCTTTGCCGGTAATACTGGCCATGATCCGCATGTTTTGTATACACTCAGTGCTGTAC 408
Query 230 AAATCTTGGCCCTCTTTGACAAACT-AAGCATTCTTGATGTCCAAAAAGTGTCAAGTTAT 288
|||||||||||||||| |||||||| || |||||||||||| ||||||| |||| ||||
Sbjct 409 AAATCTTGGCCCTCTTCGACAAACTCAA-CATTCTTGATGTTGAAAAAGTTTCAAATTAT 467
Query 289 ATTGCTGGGTTACAGAATAAAGATGGATCCTTCTCAGGAGATATGTGGGGCGAAGTAGAT 348
|||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||
Sbjct 468 ATTGCTGGGTTACAGAATGAAGATGGATCCTTCTCAGGAGATATATGGGGCGAAGTAGAT 527
Query 349 ACAAGGTTTTCGTACATAGCTATATGCTGTCTCTCAATATTAAAATGTCTTGATAAGATC 408
||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 528 ACAAGGTTTTCTTACATAGCTATATGCTGCCTCTCAATATTAAAATGTCTTGATAAAATC 587
Query 409 AATGTGGAGAAGGCTGTTGATTACATTGTGAGCTGCAAAAACCTGGATGGTGGTTTCGGG 468
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 588 AATGTGAAGAAGGCTGTTGATTACATTGTGAGCTGCAAAAACCTGGATGGTGGTTTTGGG 647
Query 469 TGCACACCTGGAGCGGAGTCTCATGCAGGACAGATTTTCTGTTGCGTGGGTGCTCTTGCT 528
||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 648 TGCTCACCTGGAGCGGAGTCTCATGCAGGACAGATTTTCTGTTGTGTGGGTGCTCTTGCT 707
Query 529 ATCACCGGGAATCTCCATCATGTTGATAAGGACTTACTTGGATGGTGGTTATGTGAAAGA 588
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 708 ATCACCGGGAATCTCCATCGTGTTGATAAGGACTTACTTGGATGGTGGTTATGTGAAAGA 767
Query 589 CAAGACTACGAGTCTGGAGGTTTAAATGGACGACCTGAGAAACTCCCTGATGTTTGCTAT 648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 768 CAAGACTACGAGTCTGGAGGTTTAAATGGACGACCTGAGAAACTCCCTGATGTTTGCTAT 827
Query 649 TCTTGGTGGGTGTTATCCAGCTTAATCATGATCGATAGAGTTCATTGGATCGAGAAAGGA 708
||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| |
Sbjct 828 TCTTGGTGGGTCTTATCCAGCTTAATCATGATCGATAGAGTTCACTGGATCGAGAAAGCA 887
Query 709 AAGCTTGTCAAGTTCATCTTGGACTGTCAGGACATGGATAACGGAGGTATCTCAGATA-A 767
|||||||||||||| |||||||||| ||||||||||||||||||||| |||||||||| |
Sbjct 888 AAGCTTGTCAAGTTTATCTTGGACTCTCAGGACATGGATAACGGAGGCATCTCAGATAGA 947
Query 768 TCCCAAAGATGCTGTTGATATCTTCCACACCTACTTTGGAGTTGCGGGGCTCTCTCTTCT 827
|||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 948 -CCCAGCTATACTGTTGATATCTTCCACACCTACTTTGGAGTTGCGGGGCTCTCTCTTCT 1006
Query 828 CGAGTATCCTGGAGTCAAACCAATTGATCCTGCCTACGCTTTGCCTGTCCATGTCATCAA 887
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1007 CGAGTATCCTGGAGTCAAAACAATTGATCCTGCCTACGCTTTGCCTGTCCATGTCATCAA 1066
Query 888 CCGGATTCTCTTCACCAAATGA 909
||||||||||||||||||||||
Sbjct 1067 CCGGATTCTCTTCACCAAATGA 1088
Score = 231 bits (125), Expect = 7e-60
Identities = 154/167 (92%), Gaps = 6/167 (4%)
Strand=Plus/Plus
Query 1 ATGGCAGACAAGCTCGTAGCTGACAAGCATGTTCGTTACATTC------TGATGGCAGAA 54
|||||||||||||||||||||| ||||||| |||||||||||| |||||||||||
Sbjct 135 ATGGCAGACAAGCTCGTAGCTGGCAAGCATCTTCGTTACATTCTGAATTTGATGGCAGAA 194
Query 55 AAGAAAAAAGAGAGTTTTGAGTCTGTTGTGATGGATCACCTGAGAATGAATGGTGCATAT 114
|||||||||||||||||||||||||| || |||||||| |||||||||||||||||||||
Sbjct 195 AAGAAAAAAGAGAGTTTTGAGTCTGTGGTTATGGATCATCTGAGAATGAATGGTGCATAT 254
Query 115 TGGGGACTAACCACACTAGATTTACTCGACAAGCTTGGTTCTGTTTC 161
||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct 255 TGGGGACTAACCACACTGGCTTTACTCGACAAGCTTGGTTCTGTTTC 301
> AT5G12210.1 | Symbols: AtRGTB1, RGTB1 | RAB geranylgeranyl transferase
beta subunit 1 | chr5:3947103-3949866 FORWARD LENGTH=1388
Length=1388
Score = 898 bits (486), Expect = 0.0
Identities = 659/743 (89%), Gaps = 9/743 (1%)
Strand=Plus/Plus
Query 170 GTGGCTTTGCCGGTAATACTGGACATGATCCGCATGTTATATATACACTCAGTGCTGTAC 229
|||||||||||||||| |||||||| ||||| ||| | |||||||||||||||||||||
Sbjct 381 GTGGCTTTGCCGGTAACACTGGACACGATCCACATATCCTATATACACTCAGTGCTGTAC 440
Query 230 AAATCTTGGCCCTCTTTGACAAACT-AAGCATTCTTGATGTCCAAAAAGTGTCAAGTTAT 288
||||||||||||| ||||||||| | || ||||||||| | |||||||||||||||
Sbjct 441 AAATCTTGGCCCTATTTGACAAAATCAA-CATTCTTGACATTGGGAAAGTGTCAAGTTAT 499
Query 289 ATTGCTGGGTTACAGAATAAAGATGGATCCTTCTCAGGAGATATGTGGGGCGAAGTAGAT 348
||||| ||| |||||| ||||||||||||||||||||||||||||||| ||| |||||
Sbjct 500 GTTGCTAAGTTGCAGAATGAAGATGGATCCTTCTCAGGAGATATGTGGGGAGAAATAGAT 559
Query 349 ACAAGGTTTTCGTACATAGCTATATGCTGTCTCTCAATATTAAAATGTCTTGATAAGATC 408
|| |||||||||||||||||||| ||||||||||||||||| ||||||||||| || |||
Sbjct 560 ACGAGGTTTTCGTACATAGCTATTTGCTGTCTCTCAATATTGAAATGTCTTGACAAAATC 619
Query 409 AATGTGGAGAAGGCTGTTGATTACATTGTGAGCTGCAAAAACCTGGATGGTGGTTTCGGG 468
|||||||||||||| ||| | ||||||||||||||||||||||||||||||||||| |||
Sbjct 620 AATGTGGAGAAGGCCGTTAAGTACATTGTGAGCTGCAAAAACCTGGATGGTGGTTTTGGG 679
Query 469 TGCACACCTGGAGCGGAGTCTCATGCAGGACAGATTTTCTGTTGCGTGGGTGCTCTTGCT 528
|||||||||||||| ||||| ||||||||||| |||||||| ||||| ||||||||||||
Sbjct 680 TGCACACCTGGAGCAGAGTCCCATGCAGGACAAATTTTCTGCTGCGTTGGTGCTCTTGCT 739
Query 529 ATCACCGGGAATCTCCATCATGTTGATAAGGACTTACTTGGATGGTGGTTATGTGAAAGA 588
||||| |||| ||||||||||||||||||||||| |||||| ||||||||||||||||||
Sbjct 740 ATCACTGGGAGTCTCCATCATGTTGATAAGGACTCACTTGGTTGGTGGTTATGTGAAAGA 799
Query 589 CAAGACTACGAGTCTGGAGGTTTAAATGGACGACCTGAGAAACTCCCTGATGTTTGCTAT 648
| | | || || |||| || ||||||||||| |||||||||||| ||||||||||||||
Sbjct 800 C-A-ATTA-AAGGCTGGGGGCTTAAATGGACGTCCTGAGAAACTCGCTGATGTTTGCTAT 856
Query 649 TCTTGGTGGGTGTTATCCAGCTTAATCATGATCGATAGAGTTCATTGGATCGAGAAAGGA 708
||||||||||| |||| ||| |||||||||| ||||||||||| |||||||| |||| |
Sbjct 857 TCTTGGTGGGTCCTATCGAGCCTAATCATGATAGATAGAGTTCACTGGATCGACAAAGCA 916
Query 709 AAGCTTGTCAAGTTCA-TCTTGGACTGTCAGGACATGGATAACGGAGGTATCTCAGA-TA 766
|||||||||||||||| || ||||||||||||| |||| |||||||| ||||||||
Sbjct 917 AAGCTTGTCAAGTTCATTC-TGGACTGTCAGGATTTGGACAACGGAGGCATCTCAGACCG 975
Query 767 ATCCCAAAGATGCTGTTGATATCTTCCACACCTACTTTGGAGTTGCGGGGCTCTCTCTTC 826
| ||| | |||||||||||||||||||||||||||||||||||||||||||| || || |
Sbjct 976 A-CCCGAGGATGCTGTTGATATCTTCCACACCTACTTTGGAGTTGCGGGGCTTTCCCTCC 1034
Query 827 TCGAGTATCCTGGAGTCAAACCAATTGATCCTGCCTACGCTTTGCCTGTCCATGTCATCA 886
| |||||||||||||||||| ||||||||| ||||| ||||||||||| ||||| |||
Sbjct 1035 TTGAGTATCCTGGAGTCAAAGTAATTGATCCAGCCTATGCTTTGCCTGTTGATGTCGTCA 1094
Query 887 ACCGGATTCTCTTCACCAAATGA 909
|||||||| | ||||||||||||
Sbjct 1095 ACCGGATTATATTCACCAAATGA 1117
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44406985948
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5