BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg317994
Length=738
Score E
Sequences producing significant alignments: (Bits) Value
AT3G12130.1 | Symbols: | KH domain-containing protein / zinc f... 1164 0.0
> AT3G12130.1 | Symbols: | KH domain-containing protein / zinc
finger (CCCH type) family protein | chr3:3864152-3866596 REVERSE
LENGTH=1271
Length=1271
Score = 1164 bits (630), Expect = 0.0
Identities = 702/736 (95%), Gaps = 8/736 (1%)
Strand=Plus/Plus
Query 1 ATGGATACTCGTAAGAGAGGACGGCCTGAAGCTGGCTCATTCAACTCCAATGGCGGCGGA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 191 ATGGATACTCGTAAGAGAGGACGGCCTGAAGCTGGCTCATTCAACTCCAATGGCGGCGGA 250
Query 61 TTCAAGAAGTCTAAGCAAGAGATGGAATCATATTCAACTGGTTTAGGAAGCAAATCGAAG 120
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 251 TACAAGAAGTCTAAGCAAGAGATGGAATCATATTCAACTGGTTTAGGAAGCAAATCGAAG 310
Query 121 CCATGCACAAAATTTTTCAGCACTTCTGGCTGTCCTTTTGGAGAGAATTGTCATTTCCTG 180
|||||||||||||||||||| ||||||||||||||||| ||||||||||| |||||| ||
Sbjct 311 CCATGCACAAAATTTTTCAGTACTTCTGGCTGTCCTTTCGGAGAGAATTGCCATTTCTTG 370
Query 181 CATTATGTTCCCGGAGGATACAATGCTGTAGCGCAGATGACAAATATGGGACCACCCATG 240
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 371 CATTATGTTCCCGGAGGATACAATGCTGTATCGCAGATGACAAATATGGGACCACCCATT 430
Query 241 CCTCAAGTTTCCAGAAACATGCAAGGTTCTGGTAATGGAGGCCGATTCTCAGGGAGGGGA 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 431 CCTCAAGTTTCCAGAAACATGCAAGGTTCTGGTAATGGAGGCCGATTCTCAGGGAGGGGA 490
Query 301 GAGTCTGGGCCTGGCCATGTCTCTAGCTTTGGTGCCTCAGCCACTGCCAAAATT-AGTGT 359
||||||||||||||||||||||||| |||||||| |||||||||||||| | || |||||
Sbjct 491 GAGTCTGGGCCTGGCCATGTCTCTAACTTTGGTGACTCAGCCACTGCCAGA-TTCAGTGT 549
Query 360 TGATGCCTCTTTAGCCGGTGCAATCATTGGAAAAGGTGGAGTCAGTTCAAAGCAGATATG 419
|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 550 TGATGCCTCTTTAGCCGGTGCAATCATTGGGAAAGGCGGAGTCAGTTCAAAGCAGATATG 609
Query 420 TCGTCAGACGGGGGCAAAGTTATCAATTCAAGATCACGAGAGAGACCCAAACTTGAAGAA 479
|||||||||||| | ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 610 TCGTCAGACGGGAGTAAAATTATCAATTCAAGATCACGAGAGAGACCCAAACTTGAAGAA 669
Query 480 CATTGAGCTTGAAGGAACATTTGAGCAGATAAACGAAGCGAGTGCAATGGTAAGAGAATT 539
||||| ||||||||||||| |||||||||||| |||||||||||||||||||| ||| ||
Sbjct 670 CATTGTGCTTGAAGGAACACTTGAGCAGATAAGCGAAGCGAGTGCAATGGTAAAAGATTT 729
Query 540 GATTGGGAGGCTTAATTCAGCAGCTAAGAAACCACCTGGCGGT---CTTGGTGGTGGTGG 596
||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct 730 GATTGGGAGGCTTAATTCAGCAGCTAAGAAACCACCTGGTGGTGGTCTTGGTGGTGGTGG 789
Query 597 ---CATGGGTTCTGAAGGGAAACCGCATCCAGGGAGCAACTTTAAGACTAAGATATGTGA 653
||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 790 TGGCATGGGTTCTGAAGGGAAACCACATCCAGGGAGCAACTTCAAGACTAAGATATGTGA 849
Query 654 GAGATACTCTAAAGGAAACTGTACATTTGGTGATAGATGTCACTTTGCTCATGGGGAAGC 713
||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 850 GAGATTCTCAAAAGGAAACTGTACATTTGGTGATAGATGTCACTTTGCTCATGGGGAAGC 909
Query 714 AGAGCTACGCAGGTCA 729
||||||||||| ||||
Sbjct 910 AGAGCTACGCAAGTCA 925
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35816946811
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5