BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg317998
Length=789
Score E
Sequences producing significant alignments: (Bits) Value
AT3G12170.1 | Symbols: | Chaperone DnaJ-domain superfamily pro... 1258 0.0
AT5G06910.1 | Symbols: ATJ6 | J-domain protein 6 | chr5:2140453... 586 1e-166
> AT3G12170.1 | Symbols: | Chaperone DnaJ-domain superfamily protein
| chr3:3881000-3882804 FORWARD LENGTH=959
Length=959
Score = 1258 bits (681), Expect = 0.0
Identities = 753/789 (95%), Gaps = 0/789 (0%)
Strand=Plus/Plus
Query 1 ATGGAGAATGATGGAAGATCCAGCGAGAAAAATCTTTACGAGGTTCTTGGTGTTGAAGCA 60
|||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 22 ATGGAGAATGATGGAAGATCCAATGAGAAAAATCTGTACGAGGTTCTTGGTGTTGAAGCA 81
Query 61 ACAGCATCTCCACAGGAGATAAGGAAAGCGTATCATAAGTTAGCATTGAGACTTCATCCT 120
|||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 82 ACAGCATCTCCACAAGAGATAAGGAAAGCGTATCATAAGTTAGCATTGAGGCTTCATCCT 141
Query 121 GATAAAAACAAGGACGATGAGGAAGCTAAAGAGAAATTTCAGCAGTTGCAAAAGGTTATT 180
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 142 GATAAAAACAAGGATGATGAGGATGCTAAAGAGAAATTTCAGCAGTTGCAAAAGGTTATT 201
Query 181 TCGATTCTCGGTGATGAAGAGAAAAGAGCGGTATATGATCAAACTGGCTCAGTTGATGAT 240
||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 202 TCGATTCTCGGTGATGAAGAGAAAAGAGCAGTCTATGATCAAACTGGCTCAGTTGATGAT 261
Query 241 GCTGATCTTTCGGGAGATGTGGTTGACAACTTGAGGGACTTCTTCAAGGCAATGTACAAG 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 262 GCTGATCTTTCGGGAGATGTGGTTGACAACTTGAGGGACTTCTTCAAGGCAATGTACAAG 321
Query 301 AAGGTCACGGAGGAAGATATTGAAGAGTTTGAGGCCAACTACAGGGGTTCTGAATCCGAG 360
|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 322 AAGGTCACCGAGGAAGATATTGAAGAGTTTGAGGCCAACTATAGGGGTTCTGAATCCGAG 381
Query 361 AAGAATGATTTGATTGAGCTATATAAGAAGTTTAAGGGTAAAATGAACAGGCTTTTCTGC 420
|||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||
Sbjct 382 AAGAATGATTTGATTGAGCTATATAACAAGTTTAAGGGTAAAATGAGCAGGCTTTTCTGC 441
Query 421 TCAATGCTTTGCTCAAACCCCAAGCTTGATTCACACCGTTTCAAAGATCTTATTGATGAG 480
|||||||||||||| ||||||||||||||||| ||||||||||||||| |||| ||||||
Sbjct 442 TCAATGCTTTGCTCGAACCCCAAGCTTGATTCGCACCGTTTCAAAGATATTATCGATGAG 501
Query 481 GCCATTGCAGCTGGAGAAGTGAAATCAACAAAAGCTTACAAGAAATGGGCGAAGGAAATT 540
||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 502 GCCATTGCAGCGGGAGAAGTGAAATCAACAAAAGCTTACAAGAAATGGGCAAAGGAGATT 561
Query 541 TCAGAAATGGAACCTCCCACGAATCCTCAGAAGATGAGACAGAAAGCAACAAAGGGTGCA 600
||||||||||||||||||||||||| ||||||||||||| ||||||| |||||| ||||
Sbjct 562 GCAGAAATGGAACCTCCCACGAATCCCCAGAAGATGAGACGGAAAGCAGCAAAGGCTGCA 621
Query 601 GATAAAGATTTATACGCTGTAATTTCGCAGCGAAGAGATGAGAGGAAAGAGAAGTTCGAT 660
||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||
Sbjct 622 GATAAAGATTTATACGCTGTAATGTCCCAGCGGGGAGATGAGAGGAAAGAGAAGTTCGAT 681
Query 661 TCAATGTTCTCGTCACTTGTGTCTAGGTATGGTAGCAATGCTGACTCTGAGCCAAATGAA 720
||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 682 TCAATGTTCTCTTCACTTGTCTCTAGGTATGGTAGCAATGCTGACTCTGAGCCAAACGAA 741
Query 721 GAAGAATTCGAAGCTGCACAGAGAAAAGTTGAAAGCCGGAGATCATCGAAGAAGTCGAGA 780
||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 742 GAAGAGTTCGAAGCTGCTCAGAGAAAAGTTGAAAGCCGGAGATCATCGAAGAAGTCTAGA 801
Query 781 AAAAAGTAA 789
||||| |||
Sbjct 802 AAAAAATAA 810
> AT5G06910.1 | Symbols: ATJ6 | J-domain protein 6 | chr5:2140453-2142679
FORWARD LENGTH=1154
Length=1154
Score = 586 bits (317), Expect = 1e-166
Identities = 640/791 (81%), Gaps = 42/791 (5%)
Strand=Plus/Plus
Query 25 GAGAAAAATCTTTACGAGGTTCTTGGTGTTG-AAGCAACAG-CATCTCCACAGGAGATAA 82
|||| || |||||||||||||||||| |||| ||| || || || || ||||||| ||||
Sbjct 224 GAGACAAGTCTTTACGAGGTTCTTGGAGTTGAAAG-AAGAGCCA-CTTCACAGGAAATAA 281
Query 83 GGAAAGCGTATCATAAGTTAGCATTG-AGACTTCATCCTGATAAAAA-CAAGGACGATGA 140
| ||||| || |||||||| |||||| || ||||| ||||||||||| | |||| ||| |
Sbjct 282 GAAAAGCATACCATAAGTTGGCATTGAAG-CTTCACCCTGATAAAAATC-AGGATGATAA 339
Query 141 GGAAGCTAAAGAGAAATTTCAGCAGTTGCAAAAGGTTATTTCGATTCTCGGTGATGAAGA 200
|||||||||||| || || |||||| ||||||| || || || ||||| |||||||||||
Sbjct 340 GGAAGCTAAAGACAAGTTCCAGCAGCTGCAAAAAGTGATATCAATTCTTGGTGATGAAGA 399
Query 201 GAAAAGAGCGGTATATGATCAAACTGGCTCAGTTGATGATGCTGATCTTTCGGGAGATGT 260
|||||| || || |||||||||||||||||| |||||||||||||| || | |||||||
Sbjct 400 GAAAAGGGCAGTCTATGATCAAACTGGCTCAATTGATGATGCTGATATTCCTGGAGATGC 459
Query 261 GGTTGACAACTTGAGGGACTTCTTCAAGGCA-ATGTACAAGAAGGTC-ACGGAGGAAGAT 318
| |||| || ||| |||| |||||| || | ||||| ||||||||| || || | |||
Sbjct 460 GTTTGAGAATTTGCGGGATTTCTTC-CGGGACATGTATAAGAAGGTCAAC-GAAGCTGAT 517
Query 319 ATTGAAGAGTTTGAGGCCAACTACAGGGGTTCTGAATCCGAGAAGAATGATTTGATTGAG 378
||||||||||||||||| ||||||||||| ||||| || |||||||| || ||| |||||
Sbjct 518 ATTGAAGAGTTTGAGGCAAACTACAGGGGATCTGAGTCAGAGAAGAAAGACTTGCTTGAG 577
Query 379 CTATAT-AAGAAGTTTAAGGGTAAAATGAACAGGCTTTTCTGCTCAATGCTTTGCTCAAA 437
|| | | || |||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 578 CT-TTTCAACAAGTTTAAGGGTAAAATGAACAGGCTATTCTGCTCAATGCTTTGCTCGGA 636
Query 438 CCCCAAGCTTGATTCACACCGTTTCAAAGATCTTA-TTGATGAGGCCATTGCAGCTGGAG 496
|||||||||||||||||||||||||||||| | | ||||||||||||||||||| ||||
Sbjct 637 CCCCAAGCTTGATTCACACCGTTTCAAAGA-CATGCTTGATGAGGCCATTGCAGCAGGAG 695
Query 497 AAGTGAAATCAA-CAAAAGCTTACAAGAAATGGGCGAAGGAAATTTCAGAAATGGAACCT 555
||||||| |||| ||| || || |||||||||| || |||||||||||| | ||||
Sbjct 696 AAGTGAAGTCAAGCAAG-GCATATGAGAAATGGGCAAATAAAATTTCAGAAACGAAACCG 754
Query 556 CCCACGAATCC-TC-AG-AAGATGA-GACAGAA-A-G-CA--A-CAAAGGGTGCAGATAA 605
||||| | ||| | || |||| || || |||| | | || | |||||| | |||| |
Sbjct 755 CCCACCAGTCCATTGAGGAAGAGGAAGA-AGAAGAAGTCAGCAGCAAAGGATTCAGAGAC 813
Query 606 AGAT-TTATACGCT-G-TAATTTCGCAGCGA-AGAGATGAGAGGAAAGAGAAGTTCGATT 661
|||| || | ||| | | ||| || | ||| | ||| |||||||||| |||| | || |
Sbjct 814 AGATCTT-T--GCTTGATGATTGCGAAACGACA-AGAGGAGAGGAAAGGGAAGGTGGACT 869
Query 662 CAATGTTCTCGTCACTTGTGTCTAGGTATGGTAGCAATGCTGACTCTGAGCCAAATGAAG 721
| ||||| || |||||| | |||||||||||| | |||| || | ||||| | |||||
Sbjct 870 CGATGTTTTCATCACTTATCTCTAGGTATGGTGGTGATGCGGAAGCAGAGCCCACTGAAG 929
Query 722 AAGAATTCGAAGCTGCACAGAGAAA-AGTTGAAAGCCGGAGAT--C-ATCGAAGAAGTCG 777
||||||| |||||||| ||||||| | |||||||| ||| | ||| ||||||||
Sbjct 930 AAGAATTTGAAGCTGCCCAGAGAAGGA-TTGAAAGCAAAAGAAAACCATCCAAGAAGTCT 988
Query 778 AGAAAAAAGTA 788
||| ||||||
Sbjct 989 AGAGGAAAGTA 999
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38378888308
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5