BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg317999

Length=441
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G12180.1 | Symbols:  | Cornichon family protein | chr3:38833...   749    0.0  


> AT3G12180.1 | Symbols:  | Cornichon family protein | chr3:3883362-3884805 
FORWARD LENGTH=778
Length=778

 Score =  749 bits (405),  Expect = 0.0
 Identities = 429/441 (97%), Gaps = 0/441 (0%)
 Strand=Plus/Plus

Query  1    ATGGCTTGGGATTTGTTTTTATGGATAATCTCCTTCTTCGTTAGCTTGGCTCTCGTCGCT  60
            ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct  103  ATGGCTTGGGATTTGTTTTTATGGATAGTCTCCTTCTTCGTTAGCTTGGCTCTCGTCGCT  162

Query  61   TCCGTCTTCTATCAGGTTATCTGCTTAACGGATTTAGAAGCTGATTACTTGAACCCTTTT  120
            ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  163  TCCGTCTTCTACCAGGTTATCTGCTTAACGGATTTAGAAGCTGATTACTTGAACCCTTTT  222

Query  121  GAAACAAGTACCCGTATCAACCGATTAGTTATACCTGAGTTTATCCTCCAAGGGTCACTC  180
            ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct  223  GAAACAAGTACCCGTATCAACCGATTAGTAATACCTGAGTTTATCCTCCAAGGGTCACTC  282

Query  181  TGCCTTCTCTTCCTCCTCACATGGCATTGGGTCTTTTTTCTGGTCGCCATCCCTGTAACA  240
            ||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||
Sbjct  283  TGCCTTCTCTTCCTCCTCACATGGCATTGGGTCTTCTTTCTGGTCGCCGTCCCTGTAACA  342

Query  241  GTCTATCACGCAATGTTATTCAATGAGCGACGTTATCTCATCGATGTCACTGAAGTGTTC  300
            ||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct  343  GTCTATCACGCAATGTTATACAAAGAGCGACGTTATCTCATCGATGTCACTGAAGTGTTC  402

Query  301  CGTGGTATTAGCTTTGAAAAGAAGTTCCGGTTTACCAAGCTCGGGTTCTACGTCTTTCTC  360
            |||||||| ||||||||||||||| |||||| ||||||||||||||||||||||||||||
Sbjct  403  CGTGGTATCAGCTTTGAAAAGAAGCTCCGGTATACCAAGCTCGGGTTCTACGTCTTTCTC  462

Query  361  TTCATCATGGTTGTCTTTAGGCTCACTCTCTCGGCGGTCTATAGCTTCACGGAAGACGAT  420
            |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct  463  TTCATCATGGTTGTCTTTAGGCTCACTCTCTCTGCGGTCTATAGCTTCACGGAAGATGAT  522

Query  421  GATCTACTTCATTTGTTTTGA  441
            |||||||||||||||||||||
Sbjct  523  GATCTACTTCATTTGTTTTGA  543



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20961651333


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5