BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg318005
Length=1803
Score E
Sequences producing significant alignments: (Bits) Value
AT3G12270.1 | Symbols: ATPRMT3, PRMT3 | protein arginine methyl... 2784 0.0
> AT3G12270.1 | Symbols: ATPRMT3, PRMT3 | protein arginine methyltransferase
3 | chr3:3910633-3913329 FORWARD LENGTH=2022
Length=2022
Score = 2784 bits (1507), Expect = 0.0
Identities = 1711/1810 (95%), Gaps = 11/1810 (1%)
Strand=Plus/Plus
Query 1 ATGGCGGCGACAATGGTGAAGGACGGGAATCTCAACTACAGCGAAGATGAAGAAGAAAAC 60
||||||||||||||||||||| ||| || ||||||||||||||| ||||||||||||||
Sbjct 10 ATGGCGGCGACAATGGTGAAGCACGAGATTCTCAACTACAGCGAGGATGAAGAAGAAAAT 69
Query 61 TACTCAGACGACGGAGATTGGGGTGACTGGAAAGCAGATGATAGTGGCGTaggagga-g- 118
||||||||||| ||||||||||| ||||||||||| ||||||| ||| ||| |||| |
Sbjct 70 TACTCAGACGAAGGAGATTGGGGAGACTGGAAAGCTGATGATAATGGTATAGAAGGAGGA 129
Query 119 ga-gaggaggaggaggaTGA---CGACGACTCGGAATCTGATTTTCTGTGTTTGTTTTGT 174
|| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 130 GAGGAGGAGGAGGAGGATGATGGTGACGACTCGGAATCTGATTTTCTGTGTTTGTTTTGT 189
Query 175 GATTCTCACTTCGTCTCCTGTGATTTACTCTTTGAACACTGTCGTCTGAGGCACGGGTTT 234
|||||||||||||| ||||||||||||||||| |||||||||||||| || ||||| ||
Sbjct 190 GATTCTCACTTCGTTTCCTGTGATTTACTCTTCGAACACTGTCGTCTAAGCCACGGATTC 249
Query 235 GATTTTCATCGAATTAGAAAGGAAATGAAGCTCGATTTCTACTCTTCGTTTAAGCTCATC 294
|| |||||| || ||||||||||| |||||||||||||||||||||| ||||||||||||
Sbjct 250 GACTTTCATGGAGTTAGAAAGGAATTGAAGCTCGATTTCTACTCTTCTTTTAAGCTCATC 309
Query 295 AACTATATTCGCTCAAAGGTGGCGGAGAACAAATGTTGGAGTTGGAAGATTGAAGCTGAT 354
||||||||||||||| ||||||| ||||||| |||| |||||||||||||||||||||
Sbjct 310 AACTATATTCGCTCACAGGTGGCTGAGAACATGTGTTTCAGTTGGAAGATTGAAGCTGAT 369
Query 355 GATTTCAATGATGTTAAGTTTCCTTGGGATGAAGACAAGTATCTGAAGCCCGTTTGGCAG 414
|||| ||| |||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 370 GATTACAAAGATGTTAAGTTTCCTTGGGATGAAGAGAAGTATCTGAAGCCTTTTTGGCAG 429
Query 415 GAGGATTCACTTTTGTACTCATTTGCAGATGATGAGGAAGATGAAGAAGACACGTTTGAC 474
|||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||
Sbjct 430 GAGGATTCACTTTTGTACTCGTTTGCAGATGATGAGGAAGATGAAGAAGTCACGTTTGAC 489
Query 475 AGAGAGGAAGTCATGGAGGATTTGCGGAAACTTGGGGATTTATGCATTGATGTTGAGGCT 534
||||||||||| |||||||| |||| ||| |||||||||||| |||||||||| ||||||
Sbjct 490 AGAGAGGAAGTGATGGAGGAATTGCAGAAGCTTGGGGATTTAAGCATTGATGTCGAGGCT 549
Query 535 TTAGGGGAAACCTCAATGTCGAACAATGATAAATGCAACATAAATGGAAATAAGGATGTA 594
|||||||||| |||||||||||||| |||||||||||| |||||||||| ||||||||||
Sbjct 550 TTAGGGGAAAGCTCAATGTCGAACAGTGATAAATGCAATATAAATGGAAGTAAGGATGTA 609
Query 595 ACTTTGCTCTCAAACTGCAATGGCCTGAAGCAAAGTTCTGCGGATGATTTGATAGTCAAT 654
|||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 610 ACTTCGCTCTCAAACTGCAATGGCCTAAAGCAAAGTTCTGCGGATGATTTGATAGTCAAT 669
Query 655 GGGAAAGATGCAGAACCAAAGGTTTGTGATGGAAGGCTAGTTAATAGGAACATCAAAAAG 714
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 670 GGGAAAGATGCAGAACCAAAGGTTTGTGATGGAAGGCTAGTTAATAGGAACATCAGAAAG 729
Query 715 GTGAATGAAAACTATTTTGGATCTTATAGTTCGTTTGGCATTCACAAGGAGATGCTAAAT 774
|||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 730 GTGAATGAGAACTATTTTGGATCTTATAGTTCGTTTGGCATTCACAGGGAGATGCTAAGT 789
Query 775 GATAAGGTTAGAACAGAAGCATACCGAGATGCACTTTTGAAGAATCCTACTCTCTTGAGT 834
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 790 GATAAGGTTAGAACAGAAGCATACCGAGATGCACTTTTGAAGAATCCTACTCTCTTGAAT 849
Query 835 GGCTCTGTTGTAATGGATGTTGGTTGTGGAACTGGGATATTGAGTCTCTTTGCTGCTAAA 894
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 850 GGCTCTGTTGTAATGGATGTTGGTTGTGGAACTGGGATATTGAGTCTTTTTGCTGCTAAA 909
Query 895 GCTGGGGCTTCAAGGGTAGTTGCAGTTGAAGCTAGTGAGAAGATGGCCAAAGTTGCTTCC 954
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 910 GCTGGGGCTTCAAGGGTAGTTGCAGTTGAAGCTAGTGAGAAGATGGCCAAAGTTGC-AAC 968
Query 955 AAGCAGATTGCGAAGGATAACAAAGTATTCAATGATAACGAGCATAATGGCGTTCTTGAA 1014
| |||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 969 TA--AGATTGCGAAGGATAACAAAGTATTCAATGATAACGAGCATAATGGGGTACTTGAA 1026
Query 1015 GTTGCACACTCAATGGTTGAAGAGCTAGATAAATCGATACAGATTCAAG-CTCATAGTGT 1073
||||||||||||||||| |||||||||||||||||||||||||||| || ||||||||||
Sbjct 1027 GTTGCACACTCAATGGTAGAAGAGCTAGATAAATCGATACAGATTC-AGCCTCATAGTGT 1085
Query 1074 TGATGTGTTAGTCAGCGAATGGATGGGATACTGCCTTTTATATGAGTCAATGCTCAGTTC 1133
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1086 TGATGTGTTAGTCAGCGAATGGATGGGATACTGCCTTTTATATGAGTCAATGCTCAGTTC 1145
Query 1134 TGTGCTCTATGCAAGAGATCGGTGGTTGAAACCTGGAGGTGCAATCCTCCCTGACACGGC 1193
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1146 TGTGCTCTATGCAAGAGATCGGTGGTTGAAACCTGGAGGTGCAATCCTCCCTGACACGGC 1205
Query 1194 AACTATGTTTGTTGCGGGATTTGGAAAAGGTGCCACAAGTCTTCCTTTCTGGGAAGATGT 1253
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1206 CACTATGTTTGTTGCGGGATTTGGAAAAGGTGCAACAAGTCTTCCTTTCTGGGAAGATGT 1265
Query 1254 CTATGGCTTTGACATGTCTTCAATTGGTAAGGAAATACTTGAAGACACTGCTCGACTTCC 1313
||||||||||||||||||||||||||| ||||| |||| ||| |||||| ||||||||||
Sbjct 1266 CTATGGCTTTGACATGTCTTCAATTGGGAAGGAGATACATGACGACACTACTCGACTTCC 1325
Query 1314 CATTGTTGACGTTATAGAGGAGCGTGATTTAGTGACACAGCCTGCCCTTCTTCAGACATT 1373
||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1326 CATTGTTGACGTTATAGCGGAGCGTGATTTAGTGACACAGCCTACCCTTCTTCAGACATT 1385
Query 1374 TGACCTGTCTACCATGAAACCGGATGAAGTAGATTTCACAGCAACCGCAACGCTGAAGCC 1433
||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct 1386 TGACCTGGCTACCATGAAACCGGATGAAGTAGATTTCACAGCAACGGCAACGCTGGAGCC 1445
Query 1434 CACTGAGTCAGAAGCAAAAACTAGGTTGTGCCACGGTGTTGTGTTGTGGTTCGACACAGG 1493
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 1446 CACTGAGTCAGAAGCAAAAACTAGGTTGTGCCATGGTGTTGTGTTGTGGTTTGACACAGG 1505
Query 1494 TTTCACCAATAGGTTCTGCAAGGAAAACCCAACCGTACTATCCACATCACCCTACACTCC 1553
|||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1506 TTTCACCAGTAGGTTCTGTAAGGAAAACCCAACCGTACTATCCACATCACCCTACACTCC 1565
Query 1554 CCCAACACACTGGGCTCAGACAGTCTTAACTTTTCAAGAACCAATCTCAGTGGCACCTGC 1613
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||
Sbjct 1566 CCCAACACACTGGGCTCAGACAATCTTAACTTTTCAAGAACCAATCTCAGTGGCACCGGC 1625
Query 1614 CTCGCTTCTGTCTGGTGATGACAGAAGAGGAGCCATTGGAACCAAAGAGTGTCCCGCCTC 1673
|||| ||||||||||| |||||||||||| |||||| |||||| ||||||||||||||||
Sbjct 1626 CTCGGTTCTGTCTGGTAATGACAGAAGAGAAGCCATCGGAACCGAAGAGTGTCCCGCCTC 1685
Query 1674 AAGCATTCATCTGCGTGTGAGTGTTGCACGAGCGCATGAGCATCGCAGCATTGACATCTC 1733
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 1686 AAGCATTCATCTGCGTGTGAGTGTTGCACGAGCACATGAGCATCGCAGCATAGACATCTC 1745
Query 1734 GTTAGAGGCTACTGGGCTGAGCTCAAACGGTCAGAAGCGTCGCTGGCCGGTTCAGATATT 1793
||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct 1746 GTTAGAGGCTACTGGGCTGAGCTCAAAGGGTCAGAAGCGTCACTGGCCGGTTCAGATATT 1805
Query 1794 TAATCTATGA 1803
||||||||||
Sbjct 1806 TAATCTATGA 1815
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 89206368465
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5