BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg318010
Length=1962
Score E
Sequences producing significant alignments: (Bits) Value
AT3G12340.1 | Symbols: | FKBP-like peptidyl-prolyl cis-trans i... 2106 0.0
AT3G12345.1 | Symbols: | unknown protein; LOCATED IN: chloropl... 736 0.0
> AT3G12340.1 | Symbols: | FKBP-like peptidyl-prolyl cis-trans
isomerase family protein | chr3:3925526-3929405 REVERSE LENGTH=1753
Length=1753
Score = 2106 bits (1140), Expect = 0.0
Identities = 1333/1425 (94%), Gaps = 17/1425 (1%)
Strand=Plus/Plus
Query 539 AGGCGACATTGGGCCATGGTACTGCAACCATTAAAAGCATTCTACAGTGTAACGTTGGGA 598
|||| ||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 151 AGGCAACATTGGGCCATGGTACTGCAACCAATAGAAGCATTCTACAGTGTAACGTTGGGA 210
Query 599 ACAAAAGTCCCCTCTTGTTATGTGTCTTGTCTCCCGACAAGGTTGATTCTTGCCAACTGA 658
||||||||||||||||||||||||||||| |||| || || ||||||||||||||| |||
Sbjct 211 ACAAAAGTCCCCTCTTGTTATGTGTCTTGACTCCTGATAAAGTTGATTCTTGCCAATTGA 270
Query 659 ATCTGGAGTTTGAAGAAACTGATGAAGTTATCTTCTCTGTCATCGGACCTCGGAGTGTTC 718
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 271 ATCTGGAGTTTGAAGAAACTGATGAGGTTATCTTCTCTGTCATCGGACCTCGGAGTGTAC 330
Query 719 ACCTCACTGGCTACTTCCTCGGAAGGAGTACCGCTTTTAGGCCAAATGATGATGAATCAG 778
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 331 ACCTCACTGGCTACTTCCTCGGAAGGAGTACCGGGTTTAGGCCAAATGATGATGAATCAG 390
Query 779 AGTCATATGGAGAAGACATTGTTGACACAGACATGGAGAAAGGTAGCAGTGATGATTATG 838
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 391 AGTCATTTGGAGAAGACATTGTTGACACAGACATGGAGAAAGGTAGCAGTGATGATTATG 450
Query 839 ACTACAGTGATAGTTTCATTAACGACGACGATCC-GCGTGGCCGTGGTTCACACGTGTCT 897
|||||||||||||||||||||||||||||||||| || || |||||||||||||||||||
Sbjct 451 ACTACAGTGATAGTTTCATTAACGACGACGATCCAGC-TGTCCGTGGTTCACACGTGTCT 509
Query 898 AGTACTGATGATGATGAAATATCTATTAAGGAGATGGCAGCTAAAACAAAAGACAAGaaa 957
|||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||
Sbjct 510 AGTACTGATGATGATGAAATATCTATTAAGGAGATGACAGCTAAAACAAAAGAGAAGAAA 569
Query 958 aaaaaTGGAAGTGGTGGAAGGCTAAGGAAGAAGTTTCAAGTCTCTGATTCAGATTCTGAT 1017
|||||||||| ||| |||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 570 AAAAATGGAAAAGGTAGAAGACTAAGGAAGAAGTTTCAAGTTTCTGATTCAGATTCTGAT 629
Query 1018 GAAACTTCGGCTAGAGCTGGTGAATCTAGCAATGAGGATTCTGTAGAAATACTTAACAAT 1077
||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||
Sbjct 630 GAAACTTCGGCTAGAGCTGATGAATCTAGCAATGAGGATTCTGTAGAAGTACTTAACAAT 689
Query 1078 GGTAATGAGCCCAAGATCGCCAAGGTCCTTTCTTCAGAGAGTCCTCTACCTTCAAGGGTT 1137
|||||||||||||||||||| ||||||| |||||||||||||||||| ||||||||||||
Sbjct 690 GGTAATGAGCCCAAGATCGCGAAGGTCCATTCTTCAGAGAGTCCTCTGCCTTCAAGGGTT 749
Query 1138 ACGAGGTCGAAGGCAAGAAGTTCGACTTTGGAAAATGGTGAGCCTAATGCCAAGTGTGAG 1197
||||||||||||||||||| ||||||||||||| |||||||||| ||||||||||||
Sbjct 750 ACGAGGTCGAAGGCAAGAAAATCGACTTTGGAAAGTGGTGAGCCT---GCCAAGTGTGAG 806
Query 1198 AAGACATCAGATGGAAGAACTCATACTCACAAGACTCTAGATAAAAGGCAAGATAAATCA 1257
||||||| || | || || | |||||||||||||||| ||||| ||| | |||||| ||
Sbjct 807 AAGACATTTGAAGCAAAAATTAATACTCACAAGACTCTGGATAATAGGGAGGATAAACCA 866
Query 1258 TTGGGTGATGTTAAACTTTCTCCCGTCCAGAAAGGCTGTGAAATTCTTTCGAAGaaaaaa 1317
|||| ||||| |||||| |||||||||||||||| |||||||||||||||||||||||||
Sbjct 867 TTGGATGATGCTAAACTGTCTCCCGTCCAGAAAGACTGTGAAATTCTTTCGAAGAAAAAA 926
Query 1318 aGAAACAAGGATAGGTCTAAGAGCTCAGCTATAATCATTAACTCAGATGACAAAGAGGGG 1377
||||||||||| ||||||||||| ||||||||||| ||| ||||||||||| |||||||
Sbjct 927 AGAAACAAGGAAAGGTCTAAGAGTTCAGCTATAATTATTGACTCAGATGACGGAGAGGGG 986
Query 1378 AAAAATATACCTGGAAGTCTTCAGAATGAGAAGCCAGTTACTGACGAGGGGATCAAATCA 1437
|||||||| |||| |||||||||||||||||| |||||| ||||| ||||||||||||||
Sbjct 987 AAAAATATGCCTGAAAGTCTTCAGAATGAGAATCCAGTTTCTGACAAGGGGATCAAATCA 1046
Query 1438 TCAAGTGATGTATTACTCTCTCAGAATGGTGATGCAACTCTATCAAAGAAAAAGAGGAAA 1497
||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1047 TCAAGTGATGTATTACTTTCTCAGAATGGTGATGCAACTCTATCAAAGAAAAAGAAGAAA 1106
Query 1498 AGGGATAGGAGAGAGGAAACTACAGATGTCCCAGAAAATCTAGTTGAATGTCCAGAGAAG 1557
|||||||||||||||||||||||||||||||| | | ||||||||||||||
Sbjct 1107 AGGGATAGGAGAGAGGAAACTACAGATGTCCC-G--------G---AATGTCCAGAGAAG 1154
Query 1558 AAGAAACAAGCTATCGACATGAACATCGAGAAAGAAGTTGGTACTAAGAATCCACTAGAA 1617
||||||||||||||||||| ||||||||||||||||| |||||||||||| |||||||||
Sbjct 1155 AAGAAACAAGCTATCGACAAGAACATCGAGAAAGAAGCTGGTACTAAGAAACCACTAGAA 1214
Query 1618 ACGAGGACTTTATCAAATGGAGTGATCATTGAAGAGATTGAAAAAGGAAAGTTAGATGGA 1677
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1215 ACGAGGACTTTATCAAATGGAGTGATCATTGAAGATATTGAAAAAGGAAAGTTAGATGGA 1274
Query 1678 AAATCAGCTGTTAAAGGGAAAAAGGTCAGTATACTCTATATTGGGAAGTTGAAAGACACT 1737
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1275 AAATCAGCTGTTAAAGGGAAAAAGGTCAGTATACTCTATACTGGGAAGTTGAAAGACACC 1334
Query 1738 GGGAAATTGTTTGATTCAAACTTGGGAGAAGCTCCACTAAGATTCCGCTTAGGTGGAGAA 1797
||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1335 GGGAACTTGTTTGATTCAAACTTGGGAGAAGATCCACTAAGATTCCGCTTAGGTGGAGAA 1394
Query 1798 AATGTCATAGAAGGTATCAGCATTGGTGCTGAAGGAATGCGAGTTGGTGATAAGAGAAGA 1857
||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1395 AATGTCATAGAAGGTCTCAGCATTGGTGTTGAAGGAATGCGAGTTGGTGATAAGAGAAGA 1454
Query 1858 CTCATAATTCCGCCATCCCTCGGGTACTCAAAAAAGGGATTGAAGGAAAAGGTGCCTAAG 1917
|||||||| |||||| |||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1455 CTCATAATACCGCCAGCCCTCGGGTACTCAAAAAGGGGATTGAAGGAAAAGGTGCCTAAG 1514
Query 1918 AATGCGTGGCTTGTCTATGAAGTGGAGGCAGTAAAAGTTAGATAA 1962
| ||||||||||||||||||||||||||| |||||| | ||||||
Sbjct 1515 AGTGCGTGGCTTGTCTATGAAGTGGAGGCTGTAAAAATCAGATAA 1559
> AT3G12345.1 | Symbols: | unknown protein; LOCATED IN: chloroplast;
Has 35333 Blast hits to 34131 proteins in 2444 species:
Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991;
Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source:
NCBI BLink). | chr3:3930180-3930992 REVERSE LENGTH=813
Length=813
Score = 736 bits (398), Expect = 0.0
Identities = 497/544 (91%), Gaps = 9/544 (2%)
Strand=Plus/Plus
Query 1 ATGGCGATAACACCTCTACGAATCACCAACCCATTCCCATCTCTGCGTTTTATTCCCGCC 60
||||||||||||||||| |||||||| ||||||||||||||||| || ||||||||||||
Sbjct 100 ATGGCGATAACACCTCTGCGAATCACGAACCCATTCCCATCTCTCCGCTTTATTCCCGCC 159
Query 61 GGAAAAACCAATGCTCCGAGACTCCTT-ACCGTCCGCGCCACCGAAGTTGAGTCCACGGA 119
||||| |||||||| ||| | ||| ||||||| ||| ||||| ||||||||||||||
Sbjct 160 GGAAAGCCCAATGCTTTAAGAAT-CTTCACCGTCCACGCTACCGACGTTGAGTCCACGGA 218
Query 120 AGAGACTCAACCCGACCCGGAAGCAACAACCCAGTCCGAATCAGGCACTGATCCGGACCA 179
|| |||||||||||||||| | ||| || ||||||||||| |||||||||||||||||
Sbjct 219 GGATACTCAACCCGACCCGG-A--AACTACACAGTCCGAATCCGGCACTGATCCGGACCA 275
Query 180 ATTCGAGTCTCGTCTCTCAAACATCAGACTCAGATACCGAAGCGGGACGGGTAAGAAAGC 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 276 ATTCGAGTCTCGTCTCTCAAACATCAGACTCAGATACCGAAGCGGGACGGGTAAGAAAGC 335
Query 240 AGAAGTGAGAAAGTCGAAGAAAGGGTCAAGTGGGTCTCCGTCTAAAGGCT-CGGGAATGT 298
|||||||||||| ||||||||||||||||||||||||||||| ||||| | ||||||| |
Sbjct 336 AGAAGTGAGAAAATCGAAGAAAGGGTCAAGTGGGTCTCCGTCGAAAGG-TACGGGAATAT 394
Query 299 ATTTGCCGCCGGTGAGCTTAAAAGAGGCAGTTTCAGGTGGTTTGAAAGTGGAATTAGGGT 358
||||||||||||| ||||||||||| || |||||||||||||||||||||||| |||||
Sbjct 395 ATTTGCCGCCGGTAAGCTTAAAAGAAGCGGTTTCAGGTGGTTTGAAAGTGGAACCAGGGT 454
Query 359 TTAG-CCCATACAGTGAACGGATTAACGGGAGGATTGCCGGATTAGGGCTCATGGCTTTG 417
|||| ||| | ||| ||| ||||||| || |||||||| ||||||||||||| |||||||
Sbjct 455 TTAGTCCCTT-CAGCGAAAGGATTAATGGAAGGATTGCGGGATTAGGGCTCACGGCTTTG 513
Query 418 CTTCTTGTTGAGCTCGCGACGGGTAAGAGTGTGTTGAATTACCACACGCCTTCTGTGATG 477
||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 514 CTTCTAGTTGAGCTTGCGACGGGTAAGAGTGTGTTGAATTACCACACGCCTTCTGTGGTG 573
Query 478 TTTCTTCAGATCTATTTTGTTGCGGCTGTTTCTGCTATGTTTGTCAAGATTGACAAGGAG 537
||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 574 TTTCTTCAGATCTATTTCGTTGCGGCTGTTTCTGCTATGTTTGTCAAGATTGAGAAGGAG 633
Query 538 AAGG 541
||||
Sbjct 634 AAGG 637
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 97188255120
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5