BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg318016

Length=390
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G12460.1 | Symbols:  | Polynucleotidyl transferase, ribonucl...   318    2e-86
  AT3G12430.1 | Symbols:  | Polynucleotidyl transferase, ribonucl...   302    2e-81
  AT3G12450.1 | Symbols:  | pseudogene of 3'-5' exonuclease conta...   230    1e-59
  AT3G12440.1 | Symbols:  | Polynucleotidyl transferase, ribonucl...   185    2e-46


> AT3G12460.1 | Symbols:  | Polynucleotidyl transferase, ribonuclease 
H-like superfamily protein | chr3:3954695-3955423 REVERSE 
LENGTH=729
Length=729

 Score =  318 bits (172),  Expect = 2e-86
 Identities = 210/227 (93%), Gaps = 7/227 (3%)
 Strand=Plus/Plus

Query  12   ATGGCTCCGAGAATCAGAACCATCGGAATC-TACGCTACTCAGAAAAAGTACTCAAGTCG  70
            |||||||||| ||||||||||||||| ||| |||||||||||| ||| |||||| |||||
Sbjct  1    ATGGCTCCGACAATCAGAACCATCGG-ATCTTACGCTACTCAGCAAAGGTACTC-AGTCG  58

Query  71   ATTTCTTTGGAGAAGAG-TTTATCGTCACCGTAACGCCGGATCCTTCCGTCATCGGCCAA  129
            ||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct  59   ATTTCTTTGGAGAAGAGCTTT-TCGTCACCGTAACGCCGGATCCTTCCGTCATCGGCCAA  117

Query  130  TGGATTCACGACGTCCTATTCCACAGCCG-CTTATCATCTCACCCTCTCGTTGTTGGAGT  188
            ||||||||||||||| | ||||||| ||| ||  || |||||||||||||| ||||||||
Sbjct  118  TGGATTCACGACGTCTTCTTCCACAACCGTCTC-TCTTCTCACCCTCTCGTCGTTGGAGT  176

Query  189  CGGCGTTCAGTGGACACCCTCTGGTTATCACCCTGCTTCTCCACCGG  235
            ||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct  177  CGGCGTTCAGTGGACACCCTCTGGTTACCACCCTGCTTCTCCACCGG  223


> AT3G12430.1 | Symbols:  | Polynucleotidyl transferase, ribonuclease 
H-like superfamily protein | chr3:3949580-3950377 REVERSE 
LENGTH=717
Length=717

 Score =  302 bits (163),  Expect = 2e-81
 Identities = 205/225 (91%), Gaps = 3/225 (1%)
 Strand=Plus/Plus

Query  12   ATGGCTCCGAGAATCAGAACCATCGGAATC-TACGCTACTCAGAAAAAGTACTCAAGTCG  70
            ||||||||||  |||||||||||||||| | |||||||||||| ||| |||| | |||||
Sbjct  1    ATGGCTCCGACTATCAGAACCATCGGAA-CTTACGCTACTCAGCAAAGGTAC-CTAGTCG  58

Query  71   ATTTCTTTGGAGAAGAGTTTATCGTCACCGTAACGCCGGATCCTTCCGTCATCGGCCAAT  130
            ||||||||||||||||||||||||||| ||||||||||||||| ||||| ||||||||||
Sbjct  59   ATTTCTTTGGAGAAGAGTTTATCGTCATCGTAACGCCGGATCCATCCGTTATCGGCCAAT  118

Query  131  GGATTCACGACGTCCTATTCCACAGCCGCTTATCATCTCACCCTCTCGTTGTTGGAGTCG  190
            |||||||||||||||||| ||||| |||||| || || ||||||||||||||||||||||
Sbjct  119  GGATTCACGACGTCCTATCCCACAACCGCTTCTCTTCCCACCCTCTCGTTGTTGGAGTCG  178

Query  191  GCGTTCAGTGGACACCCTCTGGTTATCACCCTGCTTCTCCACCGG  235
            |||||||||||||||||||| ||||| || |||||||| ||||||
Sbjct  179  GCGTTCAGTGGACACCCTCTAGTTATTACTCTGCTTCTTCACCGG  223


> AT3G12450.1 | Symbols:  | pseudogene of 3'-5' exonuclease containing 
protein | chr3:3953308-3953997 REVERSE LENGTH=690
Length=690

 Score =  230 bits (124),  Expect = 1e-59
 Identities = 146/157 (93%), Gaps = 0/157 (0%)
 Strand=Plus/Plus

Query  234  GGAATGTTTGGGTTATCGAGGAATGTGGCTAGATCGAGAGATAAGAATGAGCGATTGGAG  293
            |||||||||||||||||| ||| || ||||||||||||||||||| ||||| ||||||||
Sbjct  534  GGAATGTTTGGGTTATCGTGGAGTGAGGCTAGATCGAGAGATAAGCATGAGTGATTGGAG  593

Query  294  TGCGTACGACCTTTGTGACGATCAGATTCTTCAAGCGTCCATAGATGTTCATGTTTGCTT  353
            ||||||||| ||||||||||||||||||||||| ||||| || |||| ||||||||||||
Sbjct  594  TGCGTACGAGCTTTGTGACGATCAGATTCTTCAGGCGTCGATTGATGCTCATGTTTGCTT  653

Query  354  CAAGCTTGGTGTTAAGTATCGTCTATGGAAAGTTTGA  390
            |||||| ||||||||||||||||||||||||||||||
Sbjct  654  CAAGCTAGGTGTTAAGTATCGTCTATGGAAAGTTTGA  690


> AT3G12440.1 | Symbols:  | Polynucleotidyl transferase, ribonuclease 
H-like superfamily protein | chr3:3951199-3952260 REVERSE 
LENGTH=1062
Length=1062

 Score =  185 bits (100),  Expect = 2e-46
 Identities = 166/196 (85%), Gaps = 12/196 (6%)
 Strand=Plus/Plus

Query  12   ATGGCTCCGAGAATCAGAACCATCGGAA-TCTACGCTACTCAGAAAAAGTACTCAAGTCG  70
            ||||||||||||||||| | |||||||| | ||||| ||||||  ||||| |||  ||||
Sbjct  1    ATGGCTCCGAGAATCAGGAGCATCGGAAGT-TACGCAACTCAGGGAAAGTTCTC-TGTCG  58

Query  71   ATTTCTTTGGAGAAGAGTTTATCGTCACCGTAACGCCGGATCCTTCCGTCATCGGCCAAT  130
            ||||||| ||||| ||||| ||||||||||||||  ||||||||||||||||||||||||
Sbjct  59   ATTTCTTCGGAGACGAGTTCATCGTCACCGTAACTTCGGATCCTTCCGTCATCGGCCAAT  118

Query  131  GGATTCACGACGTCCTATTCCACAGCCGCTTATCATCTCACCCTCTCGTTGTTGGAGTCG  190
            ||||||||||||||||   ||   ||   || || |||| ||||||||| ||||||||||
Sbjct  119  GGATTCACGACGTCCT---CC---GC---TTCTCCTCTCGCCCTCTCGTCGTTGGAGTCG  169

Query  191  GCGTTCAGTGGACACC  206
            |||| || ||||||||
Sbjct  170  GCGTGCAATGGACACC  185



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18397996134


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5