BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg318019
Length=1005
Score E
Sequences producing significant alignments: (Bits) Value
AT3G12500.1 | Symbols: ATHCHIB, PR3, PR-3, CHI-B, B-CHI, HCHIB ... 1524 0.0
AT3G12502.1 | Symbols: | other RNA | chr3:3963124-3964222 FORW... 691 0.0
> AT3G12500.1 | Symbols: ATHCHIB, PR3, PR-3, CHI-B, B-CHI, HCHIB
| basic chitinase | chr3:3962382-3963984 REVERSE LENGTH=1127
Length=1127
Score = 1524 bits (825), Expect = 0.0
Identities = 947/1006 (94%), Gaps = 7/1006 (1%)
Strand=Plus/Plus
Query 1 ATGCCTTCaaaaaaaGAATACCATAAAACATTGAACAAAATGAAGACTAATCTTTTTCCC 60
|||||| || |||||||| |||||| |||||||||||||||||||||||||||||||| |
Sbjct 1 ATGCCTCCACAAAAAGAAAACCATAGAACATTGAACAAAATGAAGACTAATCTTTTTCTC 60
Query 61 TTCCTCATCTTCTCACTTCTCTTATCATTTTCCTCGGCCGAGCAATGTGGTCGCCAAGCC 120
|| |||||||| ||||||||| ||||||| |||||||||||||||||||||||||||||
Sbjct 61 TTTCTCATCTTTTCACTTCTCCTATCATTATCCTCGGCCGAGCAATGTGGTCGCCAAGCT 120
Query 121 GAAGGAGCCCTTTGCCCCAACGGTCTATGCTGCAGCAAGTACGGATGGTGCGGTAACACC 180
| |||||| || |||||||||||||||||||||||| ||| ||| |||||||||||||||
Sbjct 121 GGAGGAGCACTCTGCCCCAACGGTCTATGCTGCAGCGAGTTCGGCTGGTGCGGTAACACC 180
Query 181 GAACCCTACTGTAAGCAGCCTGGCTGCCAAAGCCAGTGCACTCCCGGCGGTA---CTCCT 237
||||| ||||||||||||||||||||||||||||||||||||||||| |||| |||||
Sbjct 181 GAACCATACTGTAAGCAGCCTGGCTGCCAAAGCCAGTGCACTCCCGGTGGTACTCCTCCT 240
Query 238 GGACCCACCGGCGACCTTTCGGGCATCATTTCAAGTTCTCAGTTCGATGATATGCTTAAG 297
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GGACCCACCGGCGATCTTTCGGGCATCATTTCAAGTTCTCAGTTCGATGATATGCTTAAG 300
Query 298 CATAGGAATGATGCTGCTTGTCCTGCTAGAGGTTTCTACACTTACGACGCCTTTATCACC 357
|||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 301 CATAGGAATGATGCCGCTTGTCCTGCTAGAGGTTTCTACACTTACAACGCCTTTATCACC 360
Query 358 GCTGCAAAGTCCTTCCCTGGTTTTGGCACCACCGGAGACACCGCCACGAGGAAGAAGGAG 417
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 GCTGCAAAGTCCTTCCCCGGTTTTGGCACCACCGGAGACACCGCCACGAGGAAGAAGGAG 420
Query 418 GTTGCCGCCTTCTTCGGCCAGACTTCCCATGAAACCACAGGTGGGTGGGCTTCAGCACCA 477
|| |||||||||||||||||||||||||||||||| |||||||| |||||| ||||||||
Sbjct 421 GTCGCCGCCTTCTTCGGCCAGACTTCCCATGAAACTACAGGTGGATGGGCTACAGCACCA 480
Query 478 GACGGACCATTTTCATGGGGCTACTGTTTCAAGCAAGAACAGAATCCTGGTTCAGACTAC 537
|||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 481 GACGGACCATATTCATGGGGCTACTGTTTCAAGCAAGAACAGAATCCTGCTTCAGACTAC 540
Query 538 TGTGAACCAAGCGCCACGTGGCCATGCGCATCTGGCAAACGCTACTATGGAAGAGGACCG 597
|||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 541 TGTGAACCGAGCGCCACGTGGCCATGCGCATCTGGCAAACGCTACTACGGAAGAGGACCA 600
Query 598 ATGCAGCTGACGTGGAACTACAATTACGGTCCATGCGGTAGAGACA-TAGGAGTTGACTT 656
||||| ||| ||||||||||||||||||||| ||||||||||| || |||||||||||||
Sbjct 601 ATGCAACTGTCGTGGAACTACAATTACGGTCTATGCGGTAGAG-CAATAGGAGTTGACTT 659
Query 657 ACTCAACAACCCCGACCTCGTGGCCAACGACGCAGTGATCTCTTTCAAATCCGCGATTTG 716
|||||||||||| ||||| || |||||||||||||||||| |||||||| ||||||||||
Sbjct 660 ACTCAACAACCCTGACCTTGTTGCCAACGACGCAGTGATCGCTTTCAAAGCCGCGATTTG 719
Query 717 GTTCTGGATGACTGCTCAGCCTCCCAAACCGTCGTGCCACGCCGTGATAGCCGGCCAATG 776
||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||
Sbjct 720 GTTCTGGATGACTGCTCAGCCTCCCAAACCGTCTTGCCATGCCGTGATAGCCGGCCAGTG 779
Query 777 GCAGCCGTCAGACGCCGACCGTGCAGCCGGGAGATTACCAGGTTACGGAGTGATTACGAA 836
|||||| ||||||||||||||||| |||||||||||||| ||||| ||||||||||||||
Sbjct 780 GCAGCCTTCAGACGCCGACCGTGCCGCCGGGAGATTACCGGGTTATGGAGTGATTACGAA 839
Query 837 CATCATTAACGGTGGATTGGAATGCGGACGTGGCCAAGACGGGAGAGTCGCGGATCGTAT 896
||||||||||||||||||||| || |||||||||||||||||||||||||| ||||||||
Sbjct 840 CATCATTAACGGTGGATTGGAGTGTGGACGTGGCCAAGACGGGAGAGTCGCCGATCGTAT 899
Query 897 AGGGTTTTATCAGAGGTATTGTAACATATTTGGGGTTAATCCTGGTGGTAATCTTGATTG 956
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 900 AGGGTTTTATCAGAGGTATTGTAACATATTTGGTGTTAATCCTGGTGGTAATCTTGATTG 959
Query 957 TTACAACCAAAGATCCTTTGGTAACGGCCTCCTC-AACGCTGCTAT 1001
|||||||||||||||||| | ||||||||||||| || ||||||||
Sbjct 960 TTACAACCAAAGATCCTTCGTTAACGGCCTCCTCGAA-GCTGCTAT 1004
> AT3G12502.1 | Symbols: | other RNA | chr3:3963124-3964222 FORWARD
LENGTH=727
Length=727
Score = 691 bits (374), Expect = 0.0
Identities = 428/454 (94%), Gaps = 3/454 (1%)
Strand=Plus/Minus
Query 1 ATGCCTTCaaaaaaaGAATACCATAAAACATTGAACAAAATGAAGACTAATCTTTTTCCC 60
|||||| || |||||||| |||||| |||||||||||||||||||||||||||||||| |
Sbjct 489 ATGCCTCCACAAAAAGAAAACCATAGAACATTGAACAAAATGAAGACTAATCTTTTTCTC 430
Query 61 TTCCTCATCTTCTCACTTCTCTTATCATTTTCCTCGGCCGAGCAATGTGGTCGCCAAGCC 120
|| |||||||| ||||||||| ||||||| |||||||||||||||||||||||||||||
Sbjct 429 TTTCTCATCTTTTCACTTCTCCTATCATTATCCTCGGCCGAGCAATGTGGTCGCCAAGCT 370
Query 121 GAAGGAGCCCTTTGCCCCAACGGTCTATGCTGCAGCAAGTACGGATGGTGCGGTAACACC 180
| |||||| || |||||||||||||||||||||||| ||| ||| |||||||||||||||
Sbjct 369 GGAGGAGCACTCTGCCCCAACGGTCTATGCTGCAGCGAGTTCGGCTGGTGCGGTAACACC 310
Query 181 GAACCCTACTGTAAGCAGCCTGGCTGCCAAAGCCAGTGCACTCCCGGCGGTA---CTCCT 237
||||| ||||||||||||||||||||||||||||||||||||||||| |||| |||||
Sbjct 309 GAACCATACTGTAAGCAGCCTGGCTGCCAAAGCCAGTGCACTCCCGGTGGTACTCCTCCT 250
Query 238 GGACCCACCGGCGACCTTTCGGGCATCATTTCAAGTTCTCAGTTCGATGATATGCTTAAG 297
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 249 GGACCCACCGGCGATCTTTCGGGCATCATTTCAAGTTCTCAGTTCGATGATATGCTTAAG 190
Query 298 CATAGGAATGATGCTGCTTGTCCTGCTAGAGGTTTCTACACTTACGACGCCTTTATCACC 357
|||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 189 CATAGGAATGATGCCGCTTGTCCTGCTAGAGGTTTCTACACTTACAACGCCTTTATCACC 130
Query 358 GCTGCAAAGTCCTTCCCTGGTTTTGGCACCACCGGAGACACCGCCACGAGGAAGAAGGAG 417
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 129 GCTGCAAAGTCCTTCCCCGGTTTTGGCACCACCGGAGACACCGCCACGAGGAAGAAGGAG 70
Query 418 GTTGCCGCCTTCTTCGGCCAGACTTCCCATGAAA 451
|| |||||||||||||||||||||||||||||||
Sbjct 69 GTCGCCGCCTTCTTCGGCCAGACTTCCCATGAAA 36
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49229464060
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5