BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg318024
Length=1956
Score E
Sequences producing significant alignments: (Bits) Value
AT3G12550.1 | Symbols: | XH/XS domain-containing protein | chr... 3000 0.0
AT3G48670.1 | Symbols: IDN2, RDM12 | XH/XS domain-containing pr... 99.0 2e-19
> AT3G12550.1 | Symbols: | XH/XS domain-containing protein | chr3:3978005-3981762
FORWARD LENGTH=2491
Length=2491
Score = 3000 bits (1624), Expect = 0.0
Identities = 1843/1950 (95%), Gaps = 10/1950 (1%)
Strand=Plus/Plus
Query 6 GCTCGTAGATGTAAAACAATCACTG-GAGGCGGTGATGAACAACAAATTGAGTGATTTTG 64
|||||||||||||||||||| || | ||||||||||||||||||||||||||||||||||
Sbjct 252 GCTCGTAGATGTAAAACAATAAC-GCGAGGCGGTGATGAACAACAAATTGAGTGATTTTG 310
Query 65 AGAAAAGTTTGTACAAAAAACTCAAGAGTGGAAAGCTCGAGGTGAAAGTCTCCTACCGGA 124
|||||| | ||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 311 AGAAAAATCTGTACAAAAAACTCAAGAGTGGAAAGCTCGAGGTGAAAGTCTCATACCGGA 370
Query 125 CTTTCCTCTGTCCCTATTGCCCCGATAACAAGAAGAAGGTTGGTTTGTATGTTGACATCC 184
||||||| ||||| ||||| |||||||| ||||||||||||||||||||||||||||| |
Sbjct 371 CTTTCCTGTGTCCTTATTGTCCCGATAATAAGAAGAAGGTTGGTTTGTATGTTGACATTC 430
Query 185 TTCAACATGCTTCTGGAGTTGGTAATAGCAAATCCAAGAAAAGAAGTTTGACTGAGAAGG 244
|||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 431 TTCAGCATGCTTCTGGAGTTGGTAATAGCCAATCCAAGAAAAGAAGTTTGACTGAGAAGG 490
Query 245 CAAGCCACCGTGCTCTTGCCAAATACCTTATTAAAGATCTTGCACATTACGCTACAAGTA 304
| || |||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 491 CTAGTCACCGTGCTCTTGCCAAATACCTTATTAAAGATCTTGCTCATTACGCTACTTCTA 550
Query 305 CAATATCTAAGCGCTTAAAAGCCAGAACATCACTCACTCCTGCTGAAGGCGGCGATACTC 364
| |||||||||||||||||||||||||||||| ||| |||||||||| ||||||| |||
Sbjct 551 CTATATCTAAGCGCTTAAAAGCCAGAACATCATTCATTCCTGCTGAAACCGGCGATGCTC 610
Query 365 CTCTAGTTTATGATGATGATCAATTCGAGAAACTTGTGTGGCCTTGGAAAGGCGTTTTGG 424
|| || |||||||||||| ||| ||||||||||||||||||||||||||||| |||||||
Sbjct 611 CTATAATTTATGATGATGCTCAGTTCGAGAAACTTGTGTGGCCTTGGAAAGGAGTTTTGG 670
Query 425 TTAATATTCCCACGACGATTACACAAGATGGTCGGTCTTGTACTGGAGAGAGTGGTCCAA 484
|||||||||||||||||| |||| ||||||||||||||||||||||||||||||| ||||
Sbjct 671 TTAATATTCCCACGACGAGTACAGAAGATGGTCGGTCTTGTACTGGAGAGAGTGGACCAA 730
Query 485 AACTT-AGAGATGAATTAATCCGAAGAGGATTCAACCCAATTAGAGTTCGTACTGTGTGG 543
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 731 AACTTAAG-GATGAATTAATCCGAAGAGGATTCAACCCAATTAGAGTTCGTACTGTGTGG 789
Query 544 GATCGTTTCGGTCATTCAGGAACCGGAATAGTGGAATTTAACAGAGATTGGAACGGACTT 603
|| |||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 790 GACCGTTTCGGTCATTCGGGAACCGGAATAGTGGAATTTAACAGAGACTGGAATGGACTT 849
Query 604 CACGATGCTTTGGTGTTCAAGAAGGCCTATGAAGCAGATGGTCATGGGAAAAAGGATTGG 663
|| |||||||||||||| |||||||| ||||||| |||||| ||||||||||||||||||
Sbjct 850 CAAGATGCTTTGGTGTTTAAGAAGGCTTATGAAGGAGATGGGCATGGGAAAAAGGATTGG 909
Query 664 CTGTGTGGTGCTACCGACTCGAGACTTTATGCATGGCTTGCCAATGCTGATGATTACTAT 723
|| ||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 910 CTTTGTGGTGCTACTGACTCGAGCCTTTATGCATGGCTTGCCAATGCTGATGATTACTAC 969
Query 724 AGGGCTAACTA-TTTAGGAGAAAAATTGCGGAAGATGGGTGACCTCAAAAGTATTTCTAG 782
||||||||| | |||||||||||| ||||||||||||||||||||||||||||||| |||
Sbjct 970 AGGGCTAAC-ATTTTAGGAGAAAACTTGCGGAAGATGGGTGACCTCAAAAGTATTTATAG 1028
Query 783 GTTTGCTGAAGAAGAGGCAAGGAAAGACCAAAAGCTTTTGCAGCGTCTGAACGTAATGGT 842
|||||| ||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 1029 GTTTGCAGAAGAAGAGGCAAGGAAAGACCAAAAGCTTTTGCAGCGTCTGAACTTTATGGT 1088
Query 843 TGAGACCAAACAAAATCGGTTGAAGAAGTTAGAGATAAAATATTCACAGGATTCAATTCG 902
||||| ||||||| ||||||||||||| ||| ||||||||||||||||||||||| ||
Sbjct 1089 TGAGAACAAACAATATCGGTTGAAGAAATTACAGATAAAATATTCACAGGATTCAGTTAA 1148
Query 903 ACTTAAGTATGAGACTCAAGAAAAAGAAAAGATTCTCCATTG-TTACAATGAAGATCTGA 961
|||||||||||||||| ||||||||||||||||||||| || ||||| |||||||||||
Sbjct 1149 ACTTAAGTATGAGACTGAAGAAAAAGAAAAGATTCTCC-GTGCTTACAGTGAAGATCTGA 1207
Query 962 CAGGAAGACAACAAAAATCGACTGATCACTTCAATAGGATTTTTGCTGATCATGAAAAGC 1021
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 1208 CAGGAAGACAACAAAAATCGACTGATCATTTCAATAGGATCTTTGCTGATCATGAAAAGC 1267
Query 1022 AAAAGGTGCAGCTGGAGTCTCAGATAAAGGAACTTGAAATTAGAGAA-TTGGAGTTGGCA 1080
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 1268 AAAAGGTGCAGCTGGAGTCTCAGATAAAGGAACTTGAAATTAGA-AAGTTGGAGTTGGCA 1326
Query 1081 AAACGTGAGGCAGAGAATGAAACACAGAGGAAAATAGTGGCAAAAGAGCTTGAACAGAAT 1140
||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 1327 AAACGTGAGGCAGAGAATGAAACGCAGAGGAAAATAGTGGCAAAAGAACTTGAACAGAAT 1386
Query 1141 GCTGCTATATTTAGTTACGCTCGACTAGCTGCCGTGGAACAACAAAAGACCAGAGAGAAA 1200
||||||||| |||||| | || |||| ||||| ||||||||||||||||||||||||||
Sbjct 1387 GCTGCTATAAATAGTTATGTTCAACTATCTGCCTTGGAACAACAAAAGACCAGAGAGAAA 1446
Query 1201 GTGCAAAGATTGGCTGTAGATCACAAGATGCAAAAGGAAAAGCTTCATAAGAGAATTGCT 1260
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1447 GCGCAAAGATTGGCTGTAGATCACAAGATGCAAAAGGAAAAGCTTCATAAGAGAATTGCT 1506
Query 1261 GCACTAGAAAGGCAGCTTGATCAGAAGCAGGAGCTTGAACTGGAGGTCGAGCAACTGAAA 1320
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1507 GCACTAGAAAGGCAGCTTGATCAGAAGCAGGAGCTTGAACTGGAGGTCCAGCAACTGAAA 1566
Query 1321 AGACAGCTGAGCGTGATGAGACACGTGGAATTGGACAGTGGTTCTGAAATTGTGAACAAG 1380
|| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1567 AGTCAGCTGAGCGTGATGAGACTCGTGGAATTGGACAGTGGTTCTGAAATTGTGAACAAG 1626
Query 1381 GTGGAGACCTTCCTCAGAGACCTTAGTGAGACGGAAGGAGAGCTTGCACACTTAAATAAA 1440
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||
Sbjct 1627 GTGGAGACCTTCCTCAGAGACCTTAGTGAGACAGAAGGAGAGCTTGCACACTTAAATCAA 1686
Query 1441 TTTAATCAAGATCTTGTTGTTCAAGAGCGGAAGAGCAATGATGAGCTTCAAGAAGCTCGA 1500
|| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1687 TTCAATCAAGATCTTGTTGTTCAAGAGCGGAAGAGCAATGATGAACTTCAAGAAGCTCGA 1746
Query 1501 AGAGCATTGATAAGTAATTTGAGGGACATGAGATCGCATATTGGTGTTAGGAGAATGGGG 1560
|||||||||||||| |||||||| |||||| ||| |||||||||||||| ||||||||||
Sbjct 1747 AGAGCATTGATAAGCAATTTGAGAGACATGGGATTGCATATTGGTGTTAAGAGAATGGGG 1806
Query 1561 GAGCTTGACACCAAACCGTTTATGGAAGCAATGAGAAAAAAGTACTGTCAAGAAGATTTA 1620
|||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| ||
Sbjct 1807 GAGCTTGACACCAAACCGTTTATGAAAGCAATGAGAATAAAGTACTGTCAAGAAGATCTA 1866
Query 1621 GAGGATTGGGCAGTTGAAGTTATCCAGCTCTGGGAGGAATATCTTAAGGACCCAGATTGG 1680
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1867 GAGGATTGGGCAGTTGAAGTTATCCAGCTTTGGGAGGAATATCTTAAGGACCCAGATTGG 1926
Query 1681 CATCCTTTTAAACGGATAAAGCTTGAGACTGCAGAAACAGTAGTGGAAGTAATAGATGAG 1740
||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||
Sbjct 1927 CATCCTTTTAAACGGATAAAGCTTGAGACTGCAGAAACAATAGTGGAAGTAATTGATGAG 1986
Query 1741 GATGACGAGAAGTTAAGAACCCTGAAGAATGAACTGGGGGATGATGCGTACCAAGCAGTG 1800
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1987 GATGACGAGAAGTTAAGAACCCTGAAGAATGAACTGGGGGATGATGCGTACCAAGCAGTG 2046
Query 1801 GCAAATGCATTGCTGGAAATAAACGAATATAATCCAAGTGGAAGGTACATCTCCTCAGAG 1860
||||||||||||||||| |||||||| |||||||| ||||||||||||||||||||||||
Sbjct 2047 GCAAATGCATTGCTGGAGATAAACGAGTATAATCCGAGTGGAAGGTACATCTCCTCAGAG 2106
Query 1861 CTATGGAACTTTAGAGAAGACAGGAAGGCTACGCTTGAGGAAGGTGTTACTTGTCTACTG 1920
||||||||||| ||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 2107 CTATGGAACTTCAGAGAAGACAGGAAGGCTACGCTTGAGGAAGGTGTTAATTCTCTACTG 2166
Query 1921 GAGCAATGGAATCAGGCGAAGCATCACAAG 1950
|||||||||||||| |||||||||| ||||
Sbjct 2167 GAGCAATGGAATCAAGCGAAGCATCTCAAG 2196
> AT3G48670.1 | Symbols: IDN2, RDM12 | XH/XS domain-containing
protein | chr3:18030781-18034065 FORWARD LENGTH=2447
Length=2447
Score = 99.0 bits (53), Expect = 2e-19
Identities = 88/105 (84%), Gaps = 2/105 (2%)
Strand=Plus/Plus
Query 184 CTTCAACATGCTTCTGGAGTTGGTAATAGCAAATCCAAGAAAAGAAGTTTGACTGAGAAG 243
|||||||||||||||||||||||||||||||| || | ||||||||| | |||||
Sbjct 334 CTTCAACATGCTTCTGGAGTTGGTAATAGCAATTCTGATAAAAGAAGTGCAAAGGAGAAA 393
Query 244 GCAAGCCACCGTGCTCTTGCCAAATACCTT-ATTAAAGATCTTGC 287
||||| |||| |||||||| |||||||||| | || ||||||||
Sbjct 394 GCAAGTCACCTTGCTCTTGTCAAATACCTTCAACAA-GATCTTGC 437
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 96887051850
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5