BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg318072
Length=1749
Score E
Sequences producing significant alignments: (Bits) Value
AT3G13000.2 | Symbols: | Protein of unknown function, DUF547 |... 2870 0.0
> AT3G13000.2 | Symbols: | Protein of unknown function, DUF547
| chr3:4157968-4162065 REVERSE LENGTH=2361
Length=2361
Score = 2870 bits (1554), Expect = 0.0
Identities = 1684/1749 (96%), Gaps = 0/1749 (0%)
Strand=Plus/Plus
Query 1 ATGTATGACTCTCAAGTTTTGAAATCTAAATACAATCCATTTCTCAGACGTTCGCATTCT 60
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 367 ATGTATGACTCTCAAGTTTTGAAATCTAAATACAACCCATTTCTCAGACGTTCGCATTCT 426
Query 61 GGAAAGAAATTCCAGGGCACAGTAACCATGTCAGAGGGCATAGAAACTTGCGAAGAATCT 120
||||||||||| ||||||||||| |||||||||||||||| |||||||||||||||||||
Sbjct 427 GGAAAGAAATTTCAGGGCACAGTTACCATGTCAGAGGGCAGAGAAACTTGCGAAGAATCT 486
Query 121 ACTAGTGGCGAATCTTTTCCATACAGATTTCAACTTGAAGAGGATGTAAAAAGATTGCAA 180
|| ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 487 ACGAGTGGTGAATCTTTTCCATATAGATTTCAACTTGAAGAGGATGTAAAAAGATTGCAA 546
Query 181 CTGCAACTCCAACAAGAAATAGATTTGCATACATTTCTAGAGAGTGTCATGGAGAAAGAT 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 547 CTGCAACTCCAACAAGAAATAGATTTGCATACATTTCTAGAGAGTGTCATGGAGAAAGAT 606
Query 241 CCTTGGGAGCTATCTTATTCTTCTAGTGTTCCACATCCTGCTCAGGAACTTCTTTCCAAT 300
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 607 CCTTGGGAGCTATCTTATTCTTCTAGTGTTCCACATCCTGCTCAGGAACTTCTCTCCAAT 666
Query 301 ATAGTTACGCTAGAGACTGCAGTCACAAAGCTCGAGCAAGAAATGATGTCACTGAATTTC 360
||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 667 ATAGTGACGCTAGAGACTGCAGTCACTAAGCTCGAGCAAGAAATGATGTCACTGAATTTC 726
Query 361 CAACTTAGCCAAGAGAGAAACGAGAGGAGACTCGCGGAATACCATTTGACACATTCGGCT 420
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 727 CAACTTAGCCAAGAGAGAAACGAGAGGAGACTCGCGGAATACCAGTTGACACATTCGGCT 786
Query 421 TCTCCACTAAATTCTTCTTCTTCCCTGAGATATTTGAATCAGTCAGATTCTGAATTACAT 480
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 787 TCTCCACTAAATTCTTCTTCTTCCCTAAGATATTTGAATCAGTCAGATTCTGAATTACAT 846
Query 481 CAATCAGCAGAAGACAGTCCATGTCAAGACCAAACAGCCCAAGACCAAGAATCTTCATCT 540
|||||||||||||||||||||| ||||||||||| || ||| |||||||||||||||||
Sbjct 847 CAATCAGCAGAAGACAGTCCATCTCAAGACCAAATAGTCCATTACCAAGAATCTTCATCT 906
Query 541 GAATCATCTCCAGCAGAGTCAACTGTTGAGCAAACACTGGACCCAAGTAATGACTTTCTT 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 907 GAATCATCTCCAGCAGAGTCAACTGTTGAGCAAACACTGGACCCAAGTAATGACTTTCTT 966
Query 601 GAAAAGAGGCTAATGAGAAAGACAATTGCGAGGAAGCTACCTCGAGGAATGCCACCAAAG 660
||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||
Sbjct 967 GAAAAGAGGCTAATGAGAAAGACAAATGCGAGGAAGCTACCTCGAGGAATGCCACCTAAG 1026
Query 661 CACCTGTGGGATCACCCTAATCTATTGTCTGAAGAAATGGTAAGATGTATGAAGAATATC 720
||||||||||||| ||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 1027 TACCTGTGGGATCAACCTAATCTATTATCTGAAGAAATGGTGAGATGTATGAAGAATATC 1086
Query 721 TTCATGTCTCTCGCTGATCCAACAGCAACTTCAAAAGCATCTTCAAACGAGAGCCACCTC 780
||||||||||| |||||||||||||||||||||||||| || |||||||| |||||||||
Sbjct 1087 TTCATGTCTCTTGCTGATCCAACAGCAACTTCAAAAGCTTCCTCAAACGAAAGCCACCTC 1146
Query 781 TCACCAGTATCACCTCGCGGGCATCTATCTAGCTCAGCGTCCTGGTGGCCTTCAACAGAA 840
||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 1147 TCACCAGTATCACCTCGCGGGCATCTATCAAGCTCAGCATCCTGGTGGCCTTCAACAGAA 1206
Query 841 CGGTCAATGATCTCCTCATGGGTGCAAAGCCCACAAATAGATATCCAAAATAACGCCAAT 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1207 CGGTCAATGATCTCCTCATGGGTGCAAAGCCCACAAATAGATATCCAAAATAACGCCAAT 1266
Query 901 GTTTTGGCCACGGGAGATGTCTTTGATCCTTATAGAGTTCGTGGGAAGTTAAGCTGGGCG 960
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1267 GTTTTGGCCACAGGAGATGTCTTTGATCCTTATAGAGTTCGTGGGAAGTTAAGCTGGGCG 1326
Query 961 GAGATTGGAAACTATAGTTTGGCATCCGAGGTTTCTTGGATGTCTGTTGGGAAGAAACAG 1020
|||||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1327 GAGATTGGGAACTACAGTTTGGCATCCGAGGTTTCTTGGATGTCTGTAGGGAAGAAACAG 1386
Query 1021 CTGGAATATGCTTCCGGGGCGTTGAGGAAGTTCAGGACACTGGTTGAGCAATTGGCTAGA 1080
||||| |||||||||||||| |||| ||||||||||||||||||||||||||||||||||
Sbjct 1387 CTGGAGTATGCTTCCGGGGCATTGAAGAAGTTCAGGACACTGGTTGAGCAATTGGCTAGA 1446
Query 1081 GTAAATCCTATTCATTTGAGCTGCAACGAGAAGCTAGCTTTTTGGATTAACCTATATAAT 1140
||||||||||||||||| ||||||||||||||||| ||||| ||||||||||| |||||
Sbjct 1447 GTAAATCCTATTCATTTAAGCTGCAACGAGAAGCTTGCTTTCTGGATTAACCTTTATAAC 1506
Query 1141 GCGTTGATCATGCATGCTTATTTGGCTTATGGCGTCCCAAAAAGCGACCTGAAGCTTTTC 1200
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1507 GCGTTGATAATGCATGCTTATTTGGCTTATGGCGTCCCAAAAAGCGACCTGAAGCTTTTC 1566
Query 1201 TCGTTGATGCAAAAGGCGGCATATACAGTTGGAGGGCACTCATATACTGCGGCGACAATG 1260
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 1567 TCGTTGATGCAAAAGGCAGCCTATACAGTTGGAGGGCACTCATATACTGCGGCGACAATG 1626
Query 1261 GAATATGTGATACTGAAGATGAAACCGCCTATGCACAGGCCACAAATTGCTCTGCTTCTC 1320
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1627 GAATATGTGATACTGAAGATGAAACCGCCTATGCACAGGCCACAAATTGCTTTGCTTCTT 1686
Query 1321 GCCATCCACAAGTTGAAAGTATCAGAAGAACAGCGCAGGGCAAGCATTGATACACATGAA 1380
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1687 GCCATCCACAAGATGAAAGTATCAGAAGAACAGCGCAGGGCAAGCATTGATACACATGAA 1746
Query 1381 CCTCTTCTTGGCTTTGCTCTAAGCTGTGGAATGTACTCATCCCCTGCGGTGAGGATCTAC 1440
|||||||| ||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 1747 CCTCTTCTCGGCTTTGCTCTAAGCTGTGGAATGTACTCTTCACCTGCGGTGAGGATCTAC 1806
Query 1441 ACAGTGAAAGGAGTGAAAGAAGAGCTGCTAGAAGCACAAAGAGACTTCATACAAGCATCG 1500
| | |||||||||||| |||||| |||||||||||||||| ||||||||||||||||||
Sbjct 1807 TCTGCGAAAGGAGTGAAGGAAGAGATGCTAGAAGCACAAAGGGACTTCATACAAGCATCG 1866
Query 1501 GTAGGGCTGAGCAGCAAAGGGAAGCTCTTAGTACCCAAAATGCTCCATTGTTACGCTAAG 1560
|||||||||||||||||||||||||||||| |||||||||||||||||||||| || |||
Sbjct 1867 GTAGGGCTGAGCAGCAAAGGGAAGCTCTTACTACCCAAAATGCTCCATTGTTATGCCAAG 1926
Query 1561 AGTTTGGTGGAGGATTCGAACTTGGGGGTCTGGATATCAAGGTACCTTCCTCCGCATCAA 1620
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1927 AGTTTGGTGGAGGATTCGAACTTGGGGGTCTGGATATCAAGGTACCTTCCTCCACATCAA 1986
Query 1621 GCGGCTTTTGTGGAGCAATGCATCTCTCAGAGAAGACAAAGCCTTCTCGCTTCAAGGAAC 1680
|| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1987 GCTGCTTTTGTGGAGCAATGCATCTCTCAGAGAAGACAAAGCCTTCTCGCTTCACGGAAC 2046
Query 1681 TGTGGAATACTCCCTTTCGATTCTCGTTTCAGATACCTGTTTCTGCCCGACGACAACACC 1740
|| ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 2047 TGCGGAATACTCCCCTTCGATTCTCGTTTCAGATACCTGTTTCTCCCCGACGACAACACC 2106
Query 1741 TCGTTGTAA 1749
|||||||||
Sbjct 2107 TCGTTGTAA 2115
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86495539035
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5