BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg318077
Length=1503
Score E
Sequences producing significant alignments: (Bits) Value
AT3G13050.1 | Symbols: | Major facilitator superfamily protein... 2350 0.0
> AT3G13050.1 | Symbols: | Major facilitator superfamily protein
| chr3:4176511-4179066 FORWARD LENGTH=1801
Length=1801
Score = 2350 bits (1272), Expect = 0.0
Identities = 1429/1506 (95%), Gaps = 6/1506 (0%)
Strand=Plus/Plus
Query 1 ATGGCAGATGGGAAGTCAAGATTCACGGTGGATAAAGCTCTTGTGGCGATGGGATTTGGC 60
|||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 101 ATGGCAGATGGGAACACAAGATTCACGGTGGATGAAGCTCTTGTGGCGATGGGATTTGGC 160
Query 61 AAGTTCCAGCTTTACGTCCTTGCTTACGCTGGAATGGGTTGGGTTGCAGAGGCCATGGAG 120
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 161 AAGTTCCAAATTTACGTCCTTGCTTACGCTGGAATGGGTTGGGTTGCAGAGGCCATGGAG 220
Query 121 ATGATGCTTCTCTCTTTCGTAGGACCTGCTGTTCAATCGCTCTGGAATCTCTCTGCACGA 180
|||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 221 ATGATGCTTCTCTCTTTCGTTGGACCTGCTGTTCAATCTCTCTGGAATCTCTCTGCACGC 280
Query 181 GATGAAAGCTTAATTACCAGTGTCGTTTTTGCTGGCATGCTCATTGGAGCTTACTCTTGG 240
| ||||||||||| || || |||||||||||||||||||||||||| ||||||||||||
Sbjct 281 CAGGAAAGCTTAATAACTAGCGTCGTTTTTGCTGGCATGCTCATTGGTGCTTACTCTTGG 340
Query 241 GGCATTGTTTCTGACAAACATGGCCGCAGGAAAGGATTTATCATAACTGCGGTGGTGACT 300
|||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 341 GGCATTGTTTCTGATAAACATGGCCGCAGGAAAGGGTTTATCATAACTGCGGTGGTGACT 400
Query 301 TTTATAGCTGGTTTCTTGAGCGCCTTTTCACCAAACTACATGTGGTTGATCATTCTTCGC 360
||| ||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 401 TTTGTAGCTGGTTTCTTGAGCGCATTTTCACCTAACTACATGTGGTTGATCATTCTTCGC 460
Query 361 TGTTTGGTTGGTCTTGGGTTGGGAGGAGGTCCTGTTCTTGCTTCTTGGTATCTTGAATTC 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 461 TGTTTGGTTGGTCTTGGGTTGGGAGGAGGTCCTGTTCTTGCTTCTTGGTATCTTGAATTC 520
Query 421 ATACCTGCACCAAGCCGAGGGACTTGGATGGTTGTTTTCTCAGCTTTCTGGACCGTTGGA 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 521 ATACCTGCACCAAGCCGAGGGACTTGGATGGTTGTTTTCTCAGCTTTCTGGACCGTTGGA 580
Query 481 ACCATATTCGAGGCTTCCCTTGCTTGGGTGGTCATGCCAAG-TCTGGGTTGGAGGTGGTT 539
|||||||| |||||||||||||||||| | ||||||||||| | ||||||||||||||||
Sbjct 581 ACCATATTTGAGGCTTCCCTTGCTTGGTTAGTCATGCCAAGAT-TGGGTTGGAGGTGGTT 639
Query 540 ACTTGCACTCTCTTCTGTACCTTCATCGTTGCTTCTTCTCTTCTATAGGTGGACATCCGA 599
||||||| ||||||| |||||||| ||||| |||||||| ||||||||||||||||| ||
Sbjct 640 ACTTGCATTCTCTTCGGTACCTTCTTCGTTACTTCTTCTGTTCTATAGGTGGACATCTGA 699
Query 600 GTCTCCTCGGTACTTAATCCTACAAGGCCGGAAAGCTGAAGCTCTTTCCATATTAGAGAA 659
|||||||||||||||||| ||||||||||||||||| ||||||||| |||||||||||||
Sbjct 700 GTCTCCTCGGTACTTAATTCTACAAGGCCGGAAAGCCGAAGCTCTTGCCATATTAGAGAA 759
Query 660 GATTGCGAGAATGAACGGAACCCAACTACCTCCGGGTGTTCTCAGTTCAGAATTGGAGAC 719
||||||||| |||||| ||||||||||||||||||||||||||||||||| ||||||||
Sbjct 760 GATTGCGAGGATGAACAAAACCCAACTACCTCCGGGTGTTCTCAGTTCAGAGTTGGAGAC 819
Query 720 CGAGCTGGAAGACAATAAAAACCTTCCAACAGAAAACACTCATCTTCTCAAGCCTGGAGA 779
|||||||||||| ||||||||| ||||||||||||| ||||||||||||||| |||||||
Sbjct 820 CGAGCTGGAAGAGAATAAAAACATTCCAACAGAAAATACTCATCTTCTCAAGGCTGGAGA 879
Query 780 AATTGGAGAAGCTGTTGCTGTGTCCAAGATTGTACTAAAAGCTGATAAGGAACCAGCTTT 839
|| ||||||||| ||||||||||| ||||||||||||||||||||||||||||||| |||
Sbjct 880 AAGTGGAGAAGCGGTTGCTGTGTCTAAGATTGTACTAAAAGCTGATAAGGAACCAGGTTT 939
Query 840 CTCGTTACTAGCTCTTCTATCTCCAACGCTAATCAAGCGGACTTTGCTACTATGGATTGT 899
||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||
Sbjct 940 CTCATTACTAGCTCTTCTATCTCCAACGCTAATGAAGCGGACTTTGCTACTATGGGTTGT 999
Query 900 GTTCTTTGGAAATGCGTTTGCTTATTATGGCGTTGTCCTTCTCACCACTGAGCTGAACAA 959
|||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 1000 GTTCTTTGGAAATGCGTTTGCTTACTATGGCGTTGTCCTTCTCACCACCGAGCTGAACAA 1059
Query 960 TTCCCATAACCGCTGCTATCCAACCGAGAAACAGTTGGGAAATTCAAACGATGTTAACTA 1019
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1060 TTCCCATAACCGCTGCTATCCAACCGAGAAACAGTTGCGAAATTCAAACGATGTTAACTA 1119
Query 1020 CA-AGGACGTTTTCATCGCCAGTTTTGCAGAGTTTCCAGGTCTACTGATATCAGCAGCAA 1078
|| || |||||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1120 CAGAG-ACGTTTTCATTGCCAGTTTCGCAGAGTTTCCAGGTCTACTGATATCAGCAGCAA 1178
Query 1079 TGGTGGATAGACTTGGACGAAAAGTTTCAATGGCATCAATGTTATTCACATGTTGCATTT 1138
|||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||
Sbjct 1179 TGGTGGATAGACTTGGACGAAAAGCTTCAATGGCATCAATGTTGTTCACATGTTGCATTT 1238
Query 1139 TCCTTCTCCCTCTGTTATCTCATCAATCTCCATTCATAACCACTGCTCTTCTCTTTGGTG 1198
||||||||||||||||||| ||||| ||||||||||||||||| | ||||||||| || |
Sbjct 1239 TCCTTCTCCCTCTGTTATCCCATCAGTCTCCATTCATAACCACCGTTCTTCTCTTCGGCG 1298
Query 1199 GCCGTATCTGCATCTCGGCGGCTTTCACAGTGGTTTACATATATGCTCCGGAGATATATC 1258
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1299 GCCGTATCTGCATCTCGGCAGCTTTCACAGTGGTTTACATATATGCTCCGGAGATATATC 1358
Query 1259 CAACGGCAGTGAGAACAACTGGAGTAGGAGT-GGCGAGCTCGGTAGGACGAATCGGAGGA 1317
||||||||||||||||||| ||||||||||| || ||||||||||||| |||| ||||||
Sbjct 1359 CAACGGCAGTGAGAACAACCGGAGTAGGAGTAGG-GAGCTCGGTAGGAAGAATTGGAGGA 1417
Query 1318 ATCTTGTGTCCACTAGTGGCCGTTGGATTAGTTCACGGATGTCATCAGACGATCGCTGTT 1377
||||| |||||||| || ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1418 ATCTTATGTCCACTCGTAGCCGTTGGATTAGTTCACGGATGCCATCAGACGATCGCTGTT 1477
Query 1378 CTTCTGTTTGAGGTTGTGATTCTTGTCTCAGGAATTTGCGTTTGTCTCTTCCCTTTCGAG 1437
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1478 CTTCTGTTTGAGGTTGTGATTCTTGTGTCAGGAATTTGCGTTTGTCTCTTCCCTTTCGAG 1537
Query 1438 ACAAGTGGTCGTGATCTGACAGATAGTATCTCGGCGTCCAAAGAACCACCTTCAGCTTCC 1497
|||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 1538 ACAAGTGGTCGTGACCTGACAGATAGTATCTCTGCGTCCAAAGAACCACCTTCAGCCTCC 1597
Query 1498 GTATAG 1503
||||||
Sbjct 1598 GTATAG 1603
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74146204965
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5