BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg318086

Length=552
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G13140.1 | Symbols:  | hydroxyproline-rich glycoprotein fami...   760    0.0  


> AT3G13140.1 | Symbols:  | hydroxyproline-rich glycoprotein family 
protein | chr3:4226654-4227377 REVERSE LENGTH=552
Length=552

 Score =  760 bits (411),  Expect = 0.0
 Identities = 508/555 (92%), Gaps = 6/555 (1%)
 Strand=Plus/Plus

Query  1    ATGGATTACACTGTCGATATGAGCTGTGTGATGAAAGTGAACAGAAGCTGCGAGCTTTGT  60
            ||||||||||||||||||||||||||||||||||||||||||||| | ||| ||||||||
Sbjct  1    ATGGATTACACTGTCGATATGAGCTGTGTGATGAAAGTGAACAGAGGTTGCCAGCTTTGT  60

Query  61   CGGCAAAAAGTGTCAGAAGTGATGCATTGTGTCAACGGAGTTTACTCTGTGGATTTC-GT  119
            |||||||||||||||||||| |||||||||||| |||||||||||||||||||||||   
Sbjct  61   CGGCAAAAAGTGTCAGAAGTCATGCATTGTGTCTACGGAGTTTACTCTGTGGATTTCACC  120

Query  120  GAGTGACGACAACTCAATGAAACTCAAGGCGAGCGTTAACCCTAATATATTGTTGGCTGT  179
            | | |||||||||||||||||||||||||| || |||||||||||| |||||||||||||
Sbjct  121  G-GAGACGACAACTCAATGAAACTCAAGGCCAGAGTTAACCCTAATGTATTGTTGGCTGT  179

Query  180  TATTGAACGGTACGGTGAACATGGAAAGATCACTAATCTCCGTTTCGACGGGGATGTTAT  239
            |  |||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct  180  TGCTGAACGGTACGGTGAACATGGAAAGATCACTAATCTCCGTTTCGACGGAGAAGTTAT  239

Query  240  GACTCCTCGTGGCGGCGGCGGTTATTACGGTCAATCAGGATATTACATTCCTTCCACCGC  299
            ||||||||| |||||||| |||||||||||||||||||| |||||||||||| ||||| |
Sbjct  240  GACTCCTCGCGGCGGCGGTGGTTATTACGGTCAATCAGGCTATTACATTCCTACCACCTC  299

Query  300  CCGTGGTAATTATGCATATCCCTCGTTGTATCCATACCCTCCTCCGCCGTATGTTTATGG  359
            ||||||||| ||||||||||| |||||||||| ||| |||||||||||  ||||||||||
Sbjct  300  CCGTGGTAACTATGCATATCCTTCGTTGTATCAATATCCTCCTCCGCCACATGTTTATGG  359

Query  360  CGGAAACTATGCTCACCCTGC-GTCTAATCCGCCGCGGCA-TACGGAGGCACCACGGCAG  417
            ||||||||||||||| || || ||| ||||| |||||||| | |||||||||||||||||
Sbjct  360  CGGAAACTATGCTCATCC-GCCGTCAAATCCCCCGCGGCACT-CGGAGGCACCACGGCAG  417

Query  418  GTGACTAACCCGCATACAACACCGCCGTCTTATAGTCTACCGGCGCCACCGTCAAGACCG  477
            |  ||||||||||||||||||||||||| |||||||||||||||||||||  ||||| ||
Sbjct  418  GCAACTAACCCGCATACAACACCGCCGTATTATAGTCTACCGGCGCCACCACCAAGAACG  477

Query  478  GTGCATAGTTACGCTTACGTAGAACCGCAGTATCGGACGTCGGGTTCGTCGGGTAAAGGA  537
             ||||||||||| |||||||||||||||||||||||| |||| ||||||||||||  |||
Sbjct  478  TTGCATAGTTACTCTTACGTAGAACCGCAGTATCGGATGTCGAGTTCGTCGGGTAGTGGA  537

Query  538  TGCGTGATCATGTAA  552
            |||||||||||||||
Sbjct  538  TGCGTGATCATGTAA  552



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26473395469


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5