BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg318095
Length=2058
Score E
Sequences producing significant alignments: (Bits) Value
AT3G13220.1 | Symbols: WBC27, ABCG26 | ABC-2 type transporter f... 3380 0.0
> AT3G13220.1 | Symbols: WBC27, ABCG26 | ABC-2 type transporter
family protein | chr3:4247968-4250703 REVERSE LENGTH=2058
Length=2058
Score = 3380 bits (1830), Expect = 0.0
Identities = 1984/2060 (96%), Gaps = 4/2060 (0%)
Strand=Plus/Plus
Query 1 ATGGAGATCAGAAGATCAACAGAAGAAGTTGAAGAAAATCATGTAATGCAGATTACAGGA 60
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1 ATGGAGATCAGAAGATCAACAGAAGAAGTTGAAGAGAATCATGTAATGCAGATTACAGGA 60
Query 61 AGCAATGGCATAGTTCACAACATGGAGTTCATGCCCCAAGCTTACCTCAGAAACCAATAC 120
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 61 AGCAATGGCATAGTTCACAACATGGAGTTCATGCCACAAGCTTACCTCAGAAACCAATAC 120
Query 121 TCATCCGAGATTGACATCGATGAAGAGTTTGTTTCCTCTTATCCTCTCGAAGATGCCCCA 180
||||||||||||||||| ||||||||||| |||||| ||||||||||||||||||||||
Sbjct 121 TCATCCGAGATTGACATTGATGAAGAGTTCGTTTCCACTTATCCTCTCGAAGATGCCCCT 180
Query 181 CTTCCCATCTTTCTCAAGTTTGAAGATGTGGAGTATAAGGTGAGAAACAGTCAAGCTAGC 240
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 181 CTTCCCATCTTTCTCAAGTTTGAAGATGTGGAGTATAAGGTGAGAAACAGTCATGCTAGC 240
Query 241 TCGGCAAACCTGGTGAAAACCATGGTGTCAAAGGTGGTAACACATACGAATCCGGATCCA 300
|| ||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 241 TCAGCAAACCTGGTGAAAACAATGGTGTCAAAGGTGGTAACACATACAAATCCGGATCCA 300
Query 301 GATGGGTACAAACACATTTTGAAAGGCATAACAGGAAGCACAGGTCCCGGCGAAATCCTT 360
||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 301 GATGGATACAAGCACATTTTGAAAGGCATAACAGGAAGCACAGGTCCTGGCGAAATCCTT 360
Query 361 GCGCTGATGGGTCCTTCGGGTAGTGGCAAAACAACTC-TCTTGAAGATAATGGGAGGAAG 419
||||| ||||| ||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 361 GCGCTAATGGGGCCTTCGGGTAGTGGCAAAACAACTCTTC-TGAAGATAATGGGAGGAAG 419
Query 420 ATTGACAGATAATGTCAAGGGGAAGCTTACCTATAATGACATTCCTTACAGTCCATCTGT 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 ATTGACAGATAATGTCAAGGGGAAGCTTACCTATAATGACATTCCTTACAGTCCATCTGT 479
Query 480 TAAGAGGAGAATTGGTTTTGTGACGCAAGACGATGTTCTGTTGCCACAACTTACTGTGGA 539
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 TAAGAGGAGAATTGGCTTTGTGACGCAAGACGATGTTCTGTTGCCACAACTTACTGTGGA 539
Query 540 AGAGACCTTGGCATTTGCTGCGTTTTTGAGACTTCCAAGTAGCATGAGCAAGGAACAGAA 599
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 540 AGAGACCTTGGCATTTGCTGCGTTTTTAAGACTTCCAAGTAGCATGAGCAAGGAACAAAA 599
Query 600 ATACGCCAAAATAGAGATGATCATTAAAGAGCTTGGCCTTGAAAGATGCCGTCGGACAAG 659
|||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||
Sbjct 600 ATACGCCAAAATAGAGATGATCATCAAAGAGCTCGGCCTCGAAAGATGCCGTCGGACAAG 659
Query 660 AGTTGGAGGAGGTTTTGTCAAGGGAATATCAGGTGGAGAAAGAAAAAGAGCAAGTATAGC 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 AGTTGGAGGAGGTTTTGTCAAGGGAATATCAGGTGGAGAAAGAAAAAGAGCAAGTATAGC 719
Query 720 TTACGAGATTCTCGTAGATCCTTCTCTGTTGCTTCTAGACGAGCCAACTTCTGGACTTGA 779
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 TTATGAGATTCTCGTAGATCCTTCTCTGTTGCTTCTAGACGAGCCAACTTCTGGACTTGA 779
Query 780 CTCCACTTCTGCCACCAAACTTCTTCATATTCTGCAAGGAGTAGCTAAGGCAGGAAGGAC 839
||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 780 CTCCACTTCTGCCACCAAACTTCTTCATATTCTTCAAGGAGTAGCTAAGGCAGGCAGGAC 839
Query 840 CGTTATTACGACAATTCACCAACCATCAAGCAGAATGTTTCACATGTTCGATAAGCTCTT 899
|||||| ||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 840 CGTTATAACGACAATTCACCAACCATCAAGCAGAATGTTTCACATGTTTGACAAGCTCTT 899
Query 900 ACTGATCTCAGAAGGGCACCCTGCCTTTTACGGCAAAGCCAAAGAATCTATGGAGTATTT 959
|||||| |||||||| ||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 900 ACTGATATCAGAAGGACACCCTGCCTTTTACGGCAAAGCCAGAGAATCTATGGAGTATTT 959
Query 960 CTCATCTTTGAGAATCTTACCTGAAATTGCAATGAACCCAGCAGAGTTCTTGCTAGACTT 1019
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 960 CTCATCTTTGAGAATCTTACCTGAGATTGCAATGAACCCAGCAGAGTTCTTGCTAGACTT 1019
Query 1020 GGCAACCGGACAAGTGTCAGACATTAGTCTACCCGACGAACTATTGTCTGCCAAAACCGC 1079
||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| ||
Sbjct 1020 GGCAACCGGACAAGTTTCAGACATTAGTCTACCCGACGAACTATTGGCTGCCAAAACTGC 1079
Query 1080 TCAGCCTGATTCTGAGGAAGTCTTAGTGAAATACTTGAAACAAAGGTACAAGACAGACTT 1139
|||||||||||||||||||| ||| | ||||||||||||||||||||||||||||||||
Sbjct 1080 ACAGCCTGATTCTGAGGAAGTTTTACTCAAATACTTGAAACAAAGGTACAAGACAGACTT 1139
Query 1140 GGAGCCAAAAGAGAAGGAAGAAAACCATAGAAATAGAAAGGCCCCAGAGCATCTTCAAAT 1199
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1140 GGAGCCAAAAGAGAAGGAAGAAAATCATAGAAATAGAAAGGCCCCAGAGCATCTTCAAAT 1199
Query 1200 AGCAATCCAAGTGAAGAAGGATTGGACTCTTTCATGGTGGGATCAGTTCTTGATTCTTTC 1259
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1200 AGCAATCCAAGTGAAGAAGGACTGGACTCTTTCATGGTGGGATCAGTTCTTGATTCTTTC 1259
Query 1260 AAGAAGAACATTCAGAGAGCGGCGTAGAGACTACTTTGATAAGCTAAGGCTAGTTCAATC 1319
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1260 AAGAAGAACATTCAGAGAGCGGCGTAGAGATTACTTTGATAAGCTAAGGCTAGTTCAATC 1319
Query 1320 ACTTGGTGTGGCCGTTGTGTTGGGTCTTCTCTGGTGGAAGTCAAAGACAGATACAGAGGC 1379
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1320 ACTTGGTGTGGCCGTCGTGTTGGGTCTTCTCTGGTGGAAGTCAAAGACAGATACAGAGGC 1379
Query 1380 GCACCTTAGAGACCAAGTTGGTTTGATGTTCTATATCTGCATCTTCTGGACATCATCATC 1439
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1380 TCACCTTAGAGACCAAGTTGGTTTGATGTTCTATATCTGCATCTTCTGGACATCGTCATC 1439
Query 1440 ACTCTTTGGAGCGGTATATGTGTTCCCCTTCGAGAAGATCTACCTGGTGAAAGAAAGAAA 1499
|||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1440 ACTCTTTGGAGCAGTATACGTGTTCCCCTTCGAGAAGATCTACCTGGTGAAAGAAAGAAA 1499
Query 1500 AGCAGACATGTACAGACTAAGCGTGTATTACGTATGCAGTACACTATGTGATATGGTGGC 1559
|||||| ||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 1500 AGCAGAAATGTACAGACTTAGTGTGTATTACGTATGCAGTACACTATGTGATATGGTGGC 1559
Query 1560 ACACGTTTTGTACCCTACATTCTTCATGATCATTGTCTACTTCATGGCTGGGTTCAATAG 1619
||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1560 ACACGTTTTGTACCCGACATTCTTCATGATCATTGTCTACTTCATGGCTGAGTTCAATAG 1619
Query 1620 GACCATCCCCTGCTTCCTTTTCACCGTGTTGACTATACTATTGATAGCCATAACTAGCCA 1679
|| |||||||||||||||||||||||||||||| |||||| |||||||||| ||||||||
Sbjct 1620 GAACATCCCCTGCTTCCTTTTCACCGTGTTGACAATACTACTGATAGCCATCACTAGCCA 1679
Query 1680 AGGAGCAGGAGAGTTCTTGGGAGCTTCAGTTTTGAGCATTAAGAGAGCTGGTATGATCGC 1739
||| |||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 1680 AGGTGCAGGAGAGTTCTTAGGAGCTTCAGTATTGAGCATTAAGAGAGCTGGTATGATCGC 1739
Query 1740 CTCTTTGGTACTAATGCTGTTTCTTCTAACCGGAGGTTACTATGTTCAGCACATACCCAA 1799
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||
Sbjct 1740 CTCTTTGGTACTAATGCTGTTTCTACTAACCGGAGGTTACTATGTCCAGCACATACCAAA 1799
Query 1800 ATTCATGCAGTGGTTGAAGTACTTGTCCTTCATGCACTACGGCTTCAGGCTGCTATTGAA 1859
||||||||||||||||||||||||||| ||||||||||||||||||||||| || |||||
Sbjct 1800 ATTCATGCAGTGGTTGAAGTACTTGTCATTCATGCACTACGGCTTCAGGCTACTTTTGAA 1859
Query 1860 AGTTCAATACTCAGCGGACCAACTTTTCGAATGTGGGAGCAAAGGCGGGTGCAGGACACT 1919
||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1860 AGTTCAATACTCAGCTGACCAACTTTTCGAATGTGGGAGCAAAGGCGGCTGCAGGACACT 1919
Query 1920 GCAAAGCTCATCGTCCTTTGACAC-AGTCAACTTGAATGGCGGCTTGCAAGAACTGTGGG 1978
|||||||||||||||||||||||| | | ||||||||||||||||| |||||||||||||
Sbjct 1920 GCAAAGCTCATCGTCCTTTGACACGA-TAAACTTGAATGGCGGCTTACAAGAACTGTGGG 1978
Query 1979 TTCTGCTTGCTATGGCATTCGGCTACCGTCTCTGTGCATACTTCTGTCTTCGCAAGAAAA 2038
|||||||||| |||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 1979 TTCTGCTTGCCATGGCATTCGGCTACCGTCTCTGTGCATACTTTTGCCTTCGCAAGAAAA 2038
Query 2039 TAAGTATTTGCCATCTTTGA 2058
|||| |||||||||||||||
Sbjct 2039 TAAGCATTTGCCATCTTTGA 2058
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 102007507440
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5