BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg318121

Length=216
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G13435.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   344    2e-94


> AT3G13435.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: endomembrane system; Has 4 Blast hits to 4 
proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; 
Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: 
NCBI BLink). | chr3:4375425-4376069 FORWARD LENGTH=356
Length=356

 Score =  344 bits (186),  Expect = 2e-94
 Identities = 206/216 (95%), Gaps = 0/216 (0%)
 Strand=Plus/Plus

Query  1    ATGAACTGGAAGTTGGTTTTGCTATTTGGTTGGATTCTCCTCTCGTCTATTGCATCAAAC  60
            ||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct  17   ATGAATTGGAAGTTGGTTTTGCTAATTGGTTGGATTCTCCTCTCGTCTATTGCATCAAAC  76

Query  61   CCAACTTTGGCTAAAGTAACATATCCACCTCGCACGACAAGAAAAGGGCTTGGAAATATA  120
            ||| ||||||||||||| || |||||| ||||||| ||||||||| ||||||||||||||
Sbjct  77   CCAGCTTTGGCTAAAGTTACTTATCCAACTCGCACAACAAGAAAATGGCTTGGAAATATA  136

Query  121  CACATCAACAAAGGAATGAAGATTGGCTTTACAGGCAGTTTTTCTAGACCTGCTCCTCAC  180
            ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  137  CACATCAGCAAAGGAATGAAGATTGGCTTTACAGGCAGTTTTTCTAGACCTGCTCCTCAC  196

Query  181  GGAGGCGGTCCACCGAAGATCATTTCTAAGTTGTGA  216
            |||||||||||||||||||||||||||||||| |||
Sbjct  197  GGAGGCGGTCCACCGAAGATCATTTCTAAGTTATGA  232



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 9651407808


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5