BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg318122 Length=837 Score E Sequences producing significant alignments: (Bits) Value AT3G13440.1 | Symbols: | S-adenosyl-L-methionine-dependent met... 1275 0.0 AT3G13445.1 | Symbols: TBP1, TFIID-1 | TATA binding protein 1 |... 115 6e-25 > AT3G13440.1 | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr3:4377097-4379575 FORWARD LENGTH=2047 Length=2047 Score = 1275 bits (690), Expect = 0.0 Identities = 790/839 (94%), Gaps = 4/839 (0%) Strand=Plus/Plus Query 1 ATGGCTGATCAAGGATTGGAAGGGAGTAATCCTGTGGACCTTAGCAAGCATCCTTCAGGG 60 |||||||| |||||||| |||| ||||||||| ||||||||||||| |||||||||||| Sbjct 983 ATGGCTGACCAAGGATTAGAAGAGAGTAATCCAATGGACCTTAGCAAACATCCTTCAGGG 1042 Query 61 ATTGTTCCTACTCCTCATAGTCCAGTCATTTACAAGATGCCACCAAGAATTGCTGCCATC 120 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| Sbjct 1043 ATTGTTCCTACTCCTCATAGTCAAGTCATTTACAAGATGCCACCAAGAATTGCTGCTATC 1102 Query 121 CGTCTTGTAAGCTCTCATCGTGAGGTCTACGAACCATGTGATGATTCATTTGCACTAGTT 180 |||||||||||||| |||||||||||||| ||||||||||||||||||||||| |||||| Sbjct 1103 CGTCTTGTAAGCTCGCATCGTGAGGTCTATGAACCATGTGATGATTCATTTGCGCTAGTT 1162 Query 181 GATGCATTACTCGCTGATCGCACCAACCTGATAGAGCACAACCCTAAGATTTGTATGGAG 240 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 1163 GATGCATTACTCGCTGATCGCACCAACCTTATAGAGCACAACCCTAAGATTTGTATGGAG 1222 Query 241 ATTGGATGCGGAAGCGGGTATGTCATAACTTCACTTATACTTCTTCTTAAAAACGAAGTT 300 ||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| Sbjct 1223 ATTGGATGCGGAAGCGGATATGTCATAACTTCACTTATACTTCTTCTTCAAAACGAAGTT 1282 Query 301 CCTGGTGTTCATTATCTCGCCACTGACACAAACCCGATAGCTACAAGAGTGACAAAAGAA 360 |||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| Sbjct 1283 CCTGGTGTTCATTATCTCGCCATTGACACTAACCCGATAGCTACAAGAGTGACAAAAGAA 1342 Query 361 ACTCTACAAGCACATGGAGTCGATGCTGATGTCATCTGCGCAGATATAGCTTC-GGTTCT 419 |||||| ||||||||||||| |||||||||| |||||||||||| ||||| | ||| || Sbjct 1343 ACTCTAGAAGCACATGGAGTTAATGCTGATGTTATCTGCGCAGATTTAGCTACTGGT-CT 1401 Query 420 AGAGAAGAGACTTGCTGGCTCAGTCGACGTGATTGTGGTGAATCCACCTTATGTGCCAAC 479 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 1402 AGAGAAGAGACTTGCTGGCTCAGTCGACGTGATTGTGGTGAATCCGCCTTATGTGCCAAC 1461 Query 480 ACCGGAATATGAAGTTGGAATGGAAGGTATTGCCTCTGCTTGGGCTGGAGGGGAAAATGG 539 ||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 1462 ACCTGAATATGAAGTTGGAATGGAAGGTATTGCCTCTGCTTGGGCAGGAGGGGAAAATGG 1521 Query 540 CCGGACTGTTATCGATAAAATCTTGCCTGTGGTTGATCTTTTGCTTTCGGAGAAAGGTTG 599 |||||| || ||||||||||||||||||||||||||||||||||| || |||||||| || Sbjct 1522 CCGGACAGTCATCGATAAAATCTTGCCTGTGGTTGATCTTTTGCTATCAGAGAAAGGATG 1581 Query 600 GTTCTACTTAGTGACATTAACTTCGAATTTCCCAGCAGAGATTTGTCTGATGATGAGAAA 659 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 1582 GTTCTACTTAGTGACATTAACTTCAAATTTCCCAGCAGAGATTTGTCTGATGATGAGAAA 1641 Query 660 GAAGGGTTACGCGTCAAGAATTGTGGTTCAGAGATCAACAGAAGAGGAGAATCTCGTTAT 719 ||| ||||| || || ||||| || ||||||||||||||||||||||||||||||||||| Sbjct 1642 GAAAGGTTATGCTTCGAGAATCGTAGTTCAGAGATCAACAGAAGAGGAGAATCTCGTTAT 1701 Query 720 CCTTAAGTTCTGGAGAGACAAGGATGAGGAGAGCAAGGAGAAGGAGACATCATCGTCATC 779 ||| |||||||||||||||||||||||||||||| |||| || ||||||||||| ||||| Sbjct 1702 CCTAAAGTTCTGGAGAGACAAGGATGAGGAGAGCCAGGACAAAGAGACATCATCATCATC 1761 Query 780 GTTTGTTTCGCAGTTTTCGAAATCTCT-ATCATCACTTATGGAGAAACAATGGCGTTGA 837 |||||||||||||||||||||||| || ||| || |||||||||||||||||||| ||| Sbjct 1762 GTTTGTTTCGCAGTTTTCGAAATC-CTTATCTTCGCTTATGGAGAAACAATGGCGCTGA 1819 > AT3G13445.1 | Symbols: TBP1, TFIID-1 | TATA binding protein 1 | chr3:4379793-4382224 FORWARD LENGTH=1223 Length=1223 Score = 115 bits (62), Expect = 6e-25 Identities = 72/77 (94%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 1 ATGGCTGATCAAGGATTGGAAGGGAGTAATCCTGTGGACCTTAGCAAGCATCCTTCAGGG 60 ||| |||||||||||||||||||||||||||| || || ||||||||||||||||||||| Sbjct 266 ATGACTGATCAAGGATTGGAAGGGAGTAATCCAGTTGATCTTAGCAAGCATCCTTCAGGG 325 Query 61 ATTGTTCCTACTCCTCA 77 ||||||||||||| ||| Sbjct 326 ATTGTTCCTACTCTTCA 342 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 40790127364 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5