BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg318122
Length=837
Score E
Sequences producing significant alignments: (Bits) Value
AT3G13440.1 | Symbols: | S-adenosyl-L-methionine-dependent met... 1275 0.0
AT3G13445.1 | Symbols: TBP1, TFIID-1 | TATA binding protein 1 |... 115 6e-25
> AT3G13440.1 | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein | chr3:4377097-4379575
FORWARD LENGTH=2047
Length=2047
Score = 1275 bits (690), Expect = 0.0
Identities = 790/839 (94%), Gaps = 4/839 (0%)
Strand=Plus/Plus
Query 1 ATGGCTGATCAAGGATTGGAAGGGAGTAATCCTGTGGACCTTAGCAAGCATCCTTCAGGG 60
|||||||| |||||||| |||| ||||||||| ||||||||||||| ||||||||||||
Sbjct 983 ATGGCTGACCAAGGATTAGAAGAGAGTAATCCAATGGACCTTAGCAAACATCCTTCAGGG 1042
Query 61 ATTGTTCCTACTCCTCATAGTCCAGTCATTTACAAGATGCCACCAAGAATTGCTGCCATC 120
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||
Sbjct 1043 ATTGTTCCTACTCCTCATAGTCAAGTCATTTACAAGATGCCACCAAGAATTGCTGCTATC 1102
Query 121 CGTCTTGTAAGCTCTCATCGTGAGGTCTACGAACCATGTGATGATTCATTTGCACTAGTT 180
|||||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 1103 CGTCTTGTAAGCTCGCATCGTGAGGTCTATGAACCATGTGATGATTCATTTGCGCTAGTT 1162
Query 181 GATGCATTACTCGCTGATCGCACCAACCTGATAGAGCACAACCCTAAGATTTGTATGGAG 240
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1163 GATGCATTACTCGCTGATCGCACCAACCTTATAGAGCACAACCCTAAGATTTGTATGGAG 1222
Query 241 ATTGGATGCGGAAGCGGGTATGTCATAACTTCACTTATACTTCTTCTTAAAAACGAAGTT 300
||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||
Sbjct 1223 ATTGGATGCGGAAGCGGATATGTCATAACTTCACTTATACTTCTTCTTCAAAACGAAGTT 1282
Query 301 CCTGGTGTTCATTATCTCGCCACTGACACAAACCCGATAGCTACAAGAGTGACAAAAGAA 360
|||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||
Sbjct 1283 CCTGGTGTTCATTATCTCGCCATTGACACTAACCCGATAGCTACAAGAGTGACAAAAGAA 1342
Query 361 ACTCTACAAGCACATGGAGTCGATGCTGATGTCATCTGCGCAGATATAGCTTC-GGTTCT 419
|||||| ||||||||||||| |||||||||| |||||||||||| ||||| | ||| ||
Sbjct 1343 ACTCTAGAAGCACATGGAGTTAATGCTGATGTTATCTGCGCAGATTTAGCTACTGGT-CT 1401
Query 420 AGAGAAGAGACTTGCTGGCTCAGTCGACGTGATTGTGGTGAATCCACCTTATGTGCCAAC 479
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1402 AGAGAAGAGACTTGCTGGCTCAGTCGACGTGATTGTGGTGAATCCGCCTTATGTGCCAAC 1461
Query 480 ACCGGAATATGAAGTTGGAATGGAAGGTATTGCCTCTGCTTGGGCTGGAGGGGAAAATGG 539
||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1462 ACCTGAATATGAAGTTGGAATGGAAGGTATTGCCTCTGCTTGGGCAGGAGGGGAAAATGG 1521
Query 540 CCGGACTGTTATCGATAAAATCTTGCCTGTGGTTGATCTTTTGCTTTCGGAGAAAGGTTG 599
|||||| || ||||||||||||||||||||||||||||||||||| || |||||||| ||
Sbjct 1522 CCGGACAGTCATCGATAAAATCTTGCCTGTGGTTGATCTTTTGCTATCAGAGAAAGGATG 1581
Query 600 GTTCTACTTAGTGACATTAACTTCGAATTTCCCAGCAGAGATTTGTCTGATGATGAGAAA 659
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1582 GTTCTACTTAGTGACATTAACTTCAAATTTCCCAGCAGAGATTTGTCTGATGATGAGAAA 1641
Query 660 GAAGGGTTACGCGTCAAGAATTGTGGTTCAGAGATCAACAGAAGAGGAGAATCTCGTTAT 719
||| ||||| || || ||||| || |||||||||||||||||||||||||||||||||||
Sbjct 1642 GAAAGGTTATGCTTCGAGAATCGTAGTTCAGAGATCAACAGAAGAGGAGAATCTCGTTAT 1701
Query 720 CCTTAAGTTCTGGAGAGACAAGGATGAGGAGAGCAAGGAGAAGGAGACATCATCGTCATC 779
||| |||||||||||||||||||||||||||||| |||| || ||||||||||| |||||
Sbjct 1702 CCTAAAGTTCTGGAGAGACAAGGATGAGGAGAGCCAGGACAAAGAGACATCATCATCATC 1761
Query 780 GTTTGTTTCGCAGTTTTCGAAATCTCT-ATCATCACTTATGGAGAAACAATGGCGTTGA 837
|||||||||||||||||||||||| || ||| || |||||||||||||||||||| |||
Sbjct 1762 GTTTGTTTCGCAGTTTTCGAAATC-CTTATCTTCGCTTATGGAGAAACAATGGCGCTGA 1819
> AT3G13445.1 | Symbols: TBP1, TFIID-1 | TATA binding protein 1
| chr3:4379793-4382224 FORWARD LENGTH=1223
Length=1223
Score = 115 bits (62), Expect = 6e-25
Identities = 72/77 (94%), Gaps = 0/77 (0%)
Strand=Plus/Plus
Query 1 ATGGCTGATCAAGGATTGGAAGGGAGTAATCCTGTGGACCTTAGCAAGCATCCTTCAGGG 60
||| |||||||||||||||||||||||||||| || || |||||||||||||||||||||
Sbjct 266 ATGACTGATCAAGGATTGGAAGGGAGTAATCCAGTTGATCTTAGCAAGCATCCTTCAGGG 325
Query 61 ATTGTTCCTACTCCTCA 77
||||||||||||| |||
Sbjct 326 ATTGTTCCTACTCTTCA 342
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40790127364
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5