BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg318143

Length=477
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G13662.1 | Symbols:  | Disease resistance-responsive (dirige...   649    0.0  


> AT3G13662.1 | Symbols:  | Disease resistance-responsive (dirigent-like 
protein) family protein | chr3:4467090-4468498 FORWARD 
LENGTH=550
Length=550

 Score =  649 bits (351),  Expect = 0.0
 Identities = 438/478 (92%), Gaps = 13/478 (3%)
 Strand=Plus/Plus

Query  1    ATGAACGGGAAACACCTTGGCCCTTACAAAAAGGAGAAACTCACTCACCTCCGAGTCTAT  60
            ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct  85   ATGAACGGGAAACACCTTGGCCCTTACAAAAAGGAGAAACTCACTCATCTCCGAGTCTAT  144

Query  61   TGGCACAACTCCGTAAACGGTAGAAACCCTAGCTCCGTCATGATCCAACAGCCGGTCTTG  120
            ||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct  145  TGGCACAACTCTGTAAACGGTAGAAACCCTAGCTCCGTGATGATCCAACAGCCGGTCTTG  204

Query  121  AACTCATCTTCCTTATTCGGAGAGATCACCATGATGGACGATCCACTGACATTAGATGTG  180
            ||||| | | |||||| ||||  |||||||||||||||||||||||| ||||| ||||||
Sbjct  205  AACTC-T-T-CCTTATCCGGATCGATCACCATGATGGACGATCCACTAACATTCGATGTG  261

Query  181  CCAAGGAATTCAACTGTGGTGGGCCAAGCCCAAGGGATGTACGCAGCAGCGGCCCAAGGA  240
            ||||||||| | ||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct  262  CCAAGGAATGCGACTGTGGTGGGCCAAGCCCAAGGGATGTACGTAGCAGCGGCCCAAGGA  321

Query  241  GAGATTGGCTTCTTGATGGTGATGAACTTTGCTTTCACTACAGGGAAGTACAACGGGAGT  300
            ||||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct  322  GAGATAGGCTTCTTGATGGTGATGAACTTTGCTTTCACTACGGGGAAGTACAATGGGAGT  381

Query  301  ACGATCACGATTCTTGGCCGGAACGTGGTGATGTCGAAGGTTAGAGAAATGCCAGTGGTC  360
            ||||| ||||||||||| |||||||||||||||||||||||||| |||||||| ||||||
Sbjct  382  ACGATAACGATTCTTGGGCGGAACGTGGTGATGTCGAAGGTTAGGGAAATGCCGGTGGTC  441

Query  361  GGAGGCAGTGGAATCTTTCGGTTTGCTAGAGGTTACGTGGAGGCTTGCACCAAGTCGTTC  420
            ||||| |||||||||||||| |||||||||||||| || |||||| ||||||||||||| 
Sbjct  442  GGAGGTAGTGGAATCTTTCGATTTGCTAGAGGTTATGTCGAGGCTCGCACCAAGTCGTTT  501

Query  421  GATCCCAAAGCCGGTGTAGCCATTGTTGAGTATAATTGTTATAT-CTTGCATTACTGA  477
            |||| ||| |||||| | |   |||   | |||||||||||||| || ||||||||||
Sbjct  502  GATCTCAAGGCCGGT-T-G---TTGA--A-TATAATTGTTATATTCT-GCATTACTGA  550



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22705834444


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5