BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg318152
Length=1395
Score E
Sequences producing significant alignments: (Bits) Value
AT3G13730.1 | Symbols: CYP90D1 | cytochrome P450, family 90, su... 1978 0.0
> AT3G13730.1 | Symbols: CYP90D1 | cytochrome P450, family 90,
subfamily D, polypeptide 1 | chr3:4497976-4500920 REVERSE LENGTH=1914
Length=1914
Score = 1978 bits (1071), Expect = 0.0
Identities = 1175/1226 (96%), Gaps = 3/1226 (0%)
Strand=Plus/Plus
Query 170 TCATGTATGGGAGAGTCTTTAAGTCGCATATATTTGGAACGGCGACGATCGTATCGACGG 229
|||||||||||||||| |||||||||||||| |||||||||||||||||||| |||||||
Sbjct 338 TCATGTATGGGAGAGTGTTTAAGTCGCATATTTTTGGAACGGCGACGATCGTGTCGACGG 397
Query 230 ATGCTGAAGTGAACAGAGCCGTTTTACAGAGCGACTCGACGGCTTTCGTGCCGTTTTACC 289
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 398 ATGCTGAAGTGAACAGAGCCGTTTTACAGAGCGACTCGACAGCTTTCGTGCCGTTTTACC 457
Query 290 CGAAAACGGTGAGGGAGCTAATGGGAAAATCGTCGATACTTCTGATCAACGGGAGTTTAC 349
| |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 458 CAAAAACGGTAAGGGAGCTAATGGGAAAATCGTCGATACTTCTTATCAACGGGAGTTTAC 517
Query 350 ATAGAAGGTTCCATGGACTAGTCGGTTCTTTCTTAAAGTCACCACTTCTCAAAGCTCAAA 409
||||| ||||||||||| |||||||||||||||||||||| |||||||||||||||||||
Sbjct 518 ATAGACGGTTCCATGGATTAGTCGGTTCTTTCTTAAAGTCGCCACTTCTCAAAGCTCAAA 577
Query 410 TCGTTAGAGACATGCACAGGTTTTTGTCTGAATCCATGGATCTATGGTCCGAGGACCAAC 469
|||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||
Sbjct 578 TCGTTAGAGACATGCACAAGTTTTTGTCGGAATCCATGGATCTATGGTCCGAGGACCAAC 637
Query 470 CAGTTCTCCTCCAAGACGTCTCCAAGACTGTTGCATTCAAAGTACTTGCCAAGGCATTGA 529
| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 638 CTGTGCTCCTCCAAGACGTCTCCAAGACTGTTGCATTCAAAGTACTTGCCAAGGCATTGA 697
Query 530 TAAGTGTAGAGAAAGGAGAAGAGTTAGAAGAGTTAAAGAAAGAGTTTGAAAATTTCATAT 589
|||||||||||||||||||||| ||||||||| |||||| ||||||||||||||||||||
Sbjct 698 TAAGTGTAGAGAAAGGAGAAGATTTAGAAGAGCTAAAGAGAGAGTTTGAAAATTTCATAT 757
Query 590 CAGGACTCATGTCATTACCAATTAACTTCCCTGGAACCCAACTTCATAGATCTCTCCAAG 649
||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 758 CAGGACTCATGTCATTACCAATTAACTTCCCTGGAACGCAACTCCATAGATCTCTCCAAG 817
Query 650 CTAAGAAGAATATGGTGAAGCAAGTTGAAAGAATCATAGAAGGCAAAATTAGGAGTGCAA 709
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 818 CTAAGAAGAATATGGTGAAGCAAGTTGAAAGAATCATAGAAGGCAAAATTAGGAAAACAA 877
Query 710 AGAACAAAGAAGAAGATGGTACTGTGATTGCTAAGGATGTTGTGGATGTGTTGCTTAAGG 769
||||||| || |||||| | | ||| ||||| ||||||||||||||||||||||||||||
Sbjct 878 AGAACAAGGAGGAAGAT-G-A-TGTTATTGCAAAGGATGTTGTGGATGTGTTGCTTAAGG 934
Query 770 ACTCAAGTGAATATTTAACTCACAATTTGATTGCTAACAATATGATTGACATGATGATCC 829
||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 935 ACTCAAGTGAACATTTAACTCACAATTTGATTGCTAACAATATGATCGACATGATGATCC 994
Query 830 CTGGCCACGATTCTGTCCCCGTCCTCATCACCCTCGCCGTCAAATTCCTCTCTGATTCTC 889
||||||||||||||||||| |||||||| ||||| |||||||||||||||||||||||||
Sbjct 995 CTGGCCACGATTCTGTCCCTGTCCTCATTACCCTTGCCGTCAAATTCCTCTCTGATTCTC 1054
Query 890 CCGCTGCCCTCAATCTCCTAACGGAAGAAAACATGAAGCTGAAAAGTTTGAAGGAATTGA 949
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1055 CTGCTGCCCTCAATCTCCTAACGGAAGAAAACATGAAGCTGAAAAGTTTGAAGGAATTGA 1114
Query 950 CAGGAGAGCCACTATATTGGAATGACTATTTGTCGTTACCTTTTACACAAAAGGTCATTA 1009
|||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 1115 CAGGAGAGCCACTATATTGGAATGACTACTTGTCGTTACCTTTTACACAAAAGGTGATTA 1174
Query 1010 CAGAGACACTGAGAATGGGAAATGTTATAATTGGAGTGATGAGAAAGGCGATGAAAGATG 1069
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1175 CAGAGACACTGAGAATGGGAAATGTTATAATTGGAGTGATGAGAAAGGCGATGAAAGATG 1234
Query 1070 TTGAAATAAAAGGATATGTGATACCAAAAGGATGGTGCTTCTTGGCCTATTTCAGATCAG 1129
||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||
Sbjct 1235 TTGAAATAAAAGGATATGTGATACCAAAAGGATGGTGTTTCTTGGCCTATCTCAGATCAG 1294
Query 1130 TCCATCTTGATAAACTTTACTACGACTCTCCCTACAAATTTAATCCCTGGAGATGGCAAG 1189
| ||||||||||| ||||| || || ||||||||||||||||||||||||||||||||||
Sbjct 1295 TTCATCTTGATAAGCTTTATTATGAGTCTCCCTACAAATTTAATCCCTGGAGATGGCAAG 1354
Query 1190 AAAGGGACATGAACACGAGTAGTTTCAGTCCTTTTGGAGGTGGTCAGAGATTGTGCCCTG 1249
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1355 AAAGGGACATGAACACGAGTAGTTTCAGTCCTTTTGGAGGTGGTCAGAGATTGTGCCCTG 1414
Query 1250 GTCTCGATTTGGCTCGTCTTGAAGCTTCAATCTTTCTTCACCACCTTGTCACTCGCTTCA 1309
||||||||||||||||||||||| ||||| | ||||||||||| ||||||||||||||||
Sbjct 1415 GTCTCGATTTGGCTCGTCTTGAAACTTCAGTTTTTCTTCACCATCTTGTCACTCGCTTCA 1474
Query 1310 GATGGATAGCAGAAGAAGATACAATCATAAATTTTCCAACGGTGCATATGAAGAACAAAT 1369
||||||||||||||||||| ||||||||||| || |||||||||||||||||||||||||
Sbjct 1475 GATGGATAGCAGAAGAAGACACAATCATAAACTTCCCAACGGTGCATATGAAGAACAAAT 1534
Query 1370 TACCCATTTGGATCAAAAGAATATAA 1395
||||||||||||||||||||||||||
Sbjct 1535 TACCCATTTGGATCAAAAGAATATAA 1560
Score = 211 bits (114), Expect = 1e-53
Identities = 138/149 (93%), Gaps = 3/149 (2%)
Strand=Plus/Plus
Query 1 ATGGACActtcttcttcacttttgctcttctccttcttcttctttatcatcatcgtcatc 60
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 85 ATGGACACTTCTTCTTCACTTTTGTTCTTCTCCTTCTTCTTCTTTATCATCATCGTCATC 144
Query 61 ttcaACAAGATCAACGGTCTCAGATCATCCCCAGCTAC---GAAAAAACTTAAAGATTAT 117
|||||||||||||||||||||||||||||||||||| | |||||||||||| ||| ||
Sbjct 145 TTCAACAAGATCAACGGTCTCAGATCATCCCCAGCTTCAAAGAAAAAACTTAATGATCAT 204
Query 118 CATGTTATTTCTCACAGTCACGGACCAAA 146
||||||| || || ||||||||||||||
Sbjct 205 CATGTTACATCCCAGAGTCACGGACCAAA 233
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68724546105
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5