BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg318159
Length=1011
Score E
Sequences producing significant alignments: (Bits) Value
AT3G13782.1 | Symbols: NFA04, NAP1;4, NFA4 | nucleosome assembl... 1345 0.0
> AT3G13782.1 | Symbols: NFA04, NAP1;4, NFA4 | nucleosome assembly
protein1;4 | chr3:4526660-4528398 FORWARD LENGTH=954
Length=954
Score = 1345 bits (728), Expect = 0.0
Identities = 792/824 (96%), Gaps = 0/824 (0%)
Strand=Plus/Plus
Query 163 AACCTAACCTTAAAGCGACCATTTGATGTCAAAAAACTCTCACCTAAAGTCACCAAACGT 222
||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 118 AACCTAACCTTAAAGCGACCATTTGATGTGAAAAAACTCTCACCTAAAGTTACCAAACGT 177
Query 223 GTTCTGTTCCTCAAGGACATTCAGGTTAAACACGATGAACTCGAAGAGAAGTTTCTTGCG 282
|||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 178 GTTCTGTTCCTCAAAGACATTCAGGTTACACACGATGAACTCGAAGAGAAGTTTCTTGCT 237
Query 283 GAGAAAGCTGCATTGGAGGCAACATACGATAATCTCTACAAGCCGCTTTTTGATAAGAGG 342
|||||| ||||||||||||||||||| ||||||||||||||||||||||||| |||||||
Sbjct 238 GAGAAATCTGCATTGGAGGCAACATATGATAATCTCTACAAGCCGCTTTTTGCTAAGAGG 297
Query 343 TATGAAATTGTGAATGGTGTGGTTGAAGCTGAAGCAGAGAAAGAAGGAGTGCCCAATTTT 402
||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 298 TATGAAATTGTGAATGGTGTGGTCGAAGCTGAAGCAGAGAAAGAAGGAGTTCCCAATTTC 357
Query 403 TGGTTGATTGCAATGAAAACCAACGAAATGCTCGCCAATGAGATAACCGAAAGAGATGAG 462
||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||
Sbjct 358 TGGTTGATTGCAATGAAAACCAATGAAATGCTCGCAAATGAGATAACGGAAAGAGATGAG 417
Query 463 GGAGCATTGAAGTATCTAAAAGACATCAGATCTTGCAGAGTTGAAGACAATTCAAGAAAT 522
| ||||||||||||||| || |||||||||||||||||||||||||||| ||||||||||
Sbjct 418 GCAGCATTGAAGTATCTTAAGGACATCAGATCTTGCAGAGTTGAAGACACTTCAAGAAAT 477
Query 523 TTCAAGCTGGAGTTTCTCTTTGACCCCAATCCTTACTTCAAGAACTCGGTTCTGTCTAAA 582
||||||||||||||||||||||| | |||| ||||||||||||||||||||||||||||
Sbjct 478 TTCAAGCTGGAGTTTCTCTTTGATTCTAATCTTTACTTCAAGAACTCGGTTCTGTCTAAA 537
Query 583 ACTTACCATGTGAATGATGAAGATGGTCCTGTTCTTGAGAAAGTGATTGGAACGGACATA 642
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 ACTTACCATGTGAACGATGAAGATGGTCCTGTTCTTGAGAAAGTGATTGGAACGGACATA 597
Query 643 GAATGGTGTCCAGGTAAATGTTTGACTCATAAGGTTGTTGTGAAGAAGAAAGCAAAGAAA 702
||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 598 GAATGGTTTCCAGGTAAATGTTTGACTCATAAGGTTGTTGTGAAGAAGAAAACAAAGAAA 657
Query 703 GGGCCAAAGAAGGTCAACAACATCCCCATGACCAAAACCGAAAACTGCGAGAGTTTCTTC 762
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 658 GGGCCAAAGAAGGTCAACAACATCCCCATGACCAAAACAGAAAACTGCGAGAGTTTCTTC 717
Query 763 AATTTCTTCAAGCCGCCTGAGATTCCTGAGATTGATGAAGTTGACGATTACGATGATTTT 822
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 AATTTCTTCAAGCCACCTGAGATTCCTGAGATTGATGAAGTTGACGATTACGATGATTTT 777
Query 823 GATACCATTATGACGGAAGAACTCCAAAACCTGATGGACCAAGACTATGACATTGCTGTG 882
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 778 GATACCATTATGACGGAAGAACTACAAAACCTGATGGACCAAGACTATGACATTGCTGTG 837
Query 883 ACAATCCGAGATAAACTGATCCCTCATGCAGTTTCATGGTTTACTGGAGAGGCTCTTGTT 942
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 838 ACAATCCGAGATAAACTGATCCCTCATGCAGTTTCATGGTTTACGGGAGAGGCTCTTGTT 897
Query 943 GATGAAGACGATTatgatgatgatgatgatgatgatgatgatga 986
||||||||||||| ||||||| |||||||||||||| |||||||
Sbjct 898 GATGAAGACGATTCTGATGATAATGATGATGATGATAATGATGA 941
Score = 141 bits (76), Expect = 1e-32
Identities = 92/100 (92%), Gaps = 0/100 (0%)
Strand=Plus/Plus
Query 27 CATCAAAGCCGATAATAAGACCGGCGAATCCTCTGATCTCCCTAGCATTCCCGCCTTAGA 86
||||||| | |||||||||| |||||| |||||||||||||||| |||||||||||||||
Sbjct 18 CATCAAATCTGATAATAAGAGCGGCGATTCCTCTGATCTCCCTACCATTCCCGCCTTAGA 77
Query 87 TATTGGGGCAGAGGATTGTGATATTCTTGCGGAGCTTAAG 126
||||||||||||||| |||||| ||||||| |||||||||
Sbjct 78 TATTGGGGCAGAGGAATGTGATCTTCTTGCAGAGCTTAAG 117
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49530868942
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5