BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg318183

Length=543
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G13965.1 | Symbols:  | pseudogene, hypothetical protein | ch...   449    1e-125


> AT3G13965.1 | Symbols:  | pseudogene, hypothetical protein | 
chr3:4612141-4612770 REVERSE LENGTH=630
Length=630

 Score =  449 bits (243),  Expect = 1e-125
 Identities = 385/445 (87%), Gaps = 44/445 (10%)
 Strand=Plus/Plus

Query  130  CAACCTCCTCCTCTGACTCCGCCTCTAG-TCAACACGCCTCCTCCTCCGTCGCAAGACAC  188
            ||||||||||||||||||||||||| || ||||||||||||||||||||||  ||  |||
Sbjct  199  CAACCTCCTCCTCTGACTCCGCCTC-AGTTCAACACGCCTCCTCCTCCGTCAAAATCCAC  257

Query  189  CATTAACGTTATGActcctcctacttctccaccgccaccattaccatctcctccgcctcc  248
             |||||||||||||    |||| |  | |||   |||||||||||||| |||||||| ||
Sbjct  258  TATTAACGTTATGA---GTCCT-C--CGCCA---CCACCATTACCATCACCTCCGCCGCC  308

Query  249  tcctcctccacc-a--------ccaccaccgccgccgATTTCAAAACACCCTCATCCTCC  299
            |||||||||||| |        ||||| ||||| ||||||||||||| ||| | ||||||
Sbjct  309  TCCTCCTCCACCTACTCCTTCTCCACCTCCGCCACCGATTTCAAAAC-CCC-C-TCCTCC  365

Query  300  TCCGCGTGCGCAAGCGTCTCCTCCGCATTC---T--------A----ATAGAAACCAACC  344
            ||||||||| ||||| ||||||||||||||   |        |    |||||||||||||
Sbjct  366  TCCGCGTGCTCAAGCTTCTCCTCCGCATTCTAATAACAGAGAATCCCATAGAAACCAACC  425

Query  345  ACCA--A-GACGGTTACGTCCCCCATctcct---cctcctcctcctcctTCTCGGGTCTT  398
            ||||  | | |||||||||||||||||||||   ||||||||||||||||||||||||||
Sbjct  426  ACCACCACGGCGGTTACGTCCCCCATCTCCTCCACCTCCTCCTCCTCCTTCTCGGGTCTT  485

Query  399  CAAACAGTCAGAGAAAAGTGGATTAAACACAGGGAAAACAGTGGGTCTTGTATTCGCTGG  458
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  486  CAAACAGTCAGAGAAAAGTGGATTAAACACAGGGAAAACAGTGGGTCTTGTATTCGCTGG  545

Query  459  GTTTGCAGCAATCTTGCAGATTTGCGTTGTTGCCTTCTTGGTTTTCAAAAGAAAGCAGCT  518
            |||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct  546  GTTTGCAGCAATGTTGCAGATATGCGTTGTTGCCTTCTTGGTTTTCAAAAGAAAGCAGCT  605

Query  519  TCTAAGGATGACACATACTTATTGA  543
            |||||||||||||||||||||||||
Sbjct  606  TCTAAGGATGACACATACTTATTGA  630


 Score =  145 bits (78),  Expect = 5e-34
 Identities = 110/124 (89%), Gaps = 8/124 (6%)
 Strand=Plus/Plus

Query  1    ATGGGTTTTG--TT-TTATTTCTCGGCATGATTCTCAGCTTTCATGGCTTCCTTCTTGTC  57
            ||||||||||  || |||||||||||||||||||||| ||||||||||||||||||||||
Sbjct  1    ATGGGTTTTGTTTTATTATTTCTCGGCATGATTCTCACCTTTCATGGCTTCCTTCTTGTC  60

Query  58   CAATCACAACAAGA--T-CAACGGCAACCCCAATTACAATCACCACCTCCTCCGCTC-TC  113
            |||||||||||| |  | | ||  ||||| ||||||||||||||||||||||||| | ||
Sbjct  61   CAATCACAACAACAAGTTCTACCCCAACCTCAATTACAATCACCACCTCCTCCGC-CGTC  119

Query  114  TCCG  117
            ||||
Sbjct  120  TCCG  123



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26021288146


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5