BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg318184
Length=285
Score E
Sequences producing significant alignments: (Bits) Value
AT3G13970.1 | Symbols: APG12, APG12B | Ubiquitin-like superfami... 416 5e-116
AT1G54210.1 | Symbols: APG12, ATG12A, ATATG12 | Ubiquitin-like ... 324 3e-88
> AT3G13970.1 | Symbols: APG12, APG12B | Ubiquitin-like superfamily
protein | chr3:4613506-4614848 REVERSE LENGTH=529
Length=529
Score = 416 bits (225), Expect = 5e-116
Identities = 266/286 (93%), Gaps = 2/286 (1%)
Strand=Plus/Plus
Query 1 ATGGCGACGGAGTCTCCGAATTCTGTTCGGAAAATTGTTGTTCATCTAAGAGCTACTGGT 60
|||||||| || |||||||||||||||| |||||||||||||||||| |||||||||||
Sbjct 55 ATGGCGACCGAATCTCCGAATTCTGTTCAGAAAATTGTTGTTCATCTGCGAGCTACTGGT 114
Query 61 GGTGCTTCAAT-CTTGAAACAATCTAAATTCAAGATTGCAGGGACTGAAAAATTTGCTAA 119
|||||| | || | |||||||||||||||||||| || |||||| ||| || ||||||||
Sbjct 115 GGTGCTCCGATAC-TGAAACAATCTAAATTCAAGGTTTCAGGGAGTGACAAGTTTGCTAA 173
Query 120 AGTGATTGATTTTCTAAGACGGCAGCTTCACTCTGACTCATTGTTTGTTTATGTAAACAG 179
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 174 CGTGATTGATTTTCTAAGACGGCAGCTTCACTCTGACTCATTGTTTGTTTATGTGAACAG 233
Query 180 CGCTTTCTCGCCTAACCCCGATGAGTCAGTAATTGATCTATACAATAACTTTGGGTTTGA 239
|||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 234 CGCTTTCTCGCCAAACCCGGATGAATCAGTAATTGATCTATACAATAACTTTGGGTTTGA 293
Query 240 TGGTAAACTGGTGGTTAACTATGCTTGTTCCATGGCATGGGGTTAA 285
||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 294 TGGTAAACTGGTGGTGAACTATGCTTGTTCCATGGCATGGGGTTAA 339
> AT1G54210.1 | Symbols: APG12, ATG12A, ATATG12 | Ubiquitin-like
superfamily protein | chr1:20241245-20242563 FORWARD LENGTH=631
Length=631
Score = 324 bits (175), Expect = 3e-88
Identities = 242/275 (88%), Gaps = 2/275 (1%)
Strand=Plus/Plus
Query 12 GTCTCCGAATTCTGTTCGGAAAATTGTTGTTCATCTAAGAGCTACTGGTGGTGCTTCAAT 71
||| |||| |||||||||||| ||||||||||||||||||||||||| |||||| | ||
Sbjct 51 GTCCCCGAGCTCTGTTCGGAAAGTTGTTGTTCATCTAAGAGCTACTGGAGGTGCTCCTAT 110
Query 72 -CTTGAAACAATCTAAATTCAAGATTGCAGGGACTGAAAAATTTGCTAAAGTGATTGATT 130
| | ||||||||||| ||||||||| |||||||||| |||||||| ||||||||||| |
Sbjct 111 AC-TCAAACAATCTAAGTTCAAGATTCCAGGGACTGATAAATTTGCCAAAGTGATTGACT 169
Query 131 TTCTAAGACGGCAGCTTCACTCTGACTCATTGTTTGTTTATGTAAACAGCGCTTTCTCGC 190
|||| ||| | |||||||| ||||| || |||||||| ||||| || || ||||||||||
Sbjct 170 TTCTTAGAAGACAGCTTCATTCTGATTCGTTGTTTGTCTATGTGAATAGTGCTTTCTCGC 229
Query 191 CTAACCCCGATGAGTCAGTAATTGATCTATACAATAACTTTGGGTTTGATGGTAAACTGG 250
| ||||| ||||| ||||| |||||||| || ||||||||||| ||||||||||||||||
Sbjct 230 CAAACCCTGATGAATCAGTCATTGATCTTTATAATAACTTTGGATTTGATGGTAAACTGG 289
Query 251 TGGTTAACTATGCTTGTTCCATGGCATGGGGTTAA 285
||||||||||||||||||||||||||||||| |||
Sbjct 290 TGGTTAACTATGCTTGTTCCATGGCATGGGGCTAA 324
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 13119882489
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5