BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg318190
Length=1350
Score E
Sequences producing significant alignments: (Bits) Value
AT3G14040.1 | Symbols: | Pectin lyase-like superfamily protein... 2017 0.0
AT3G07850.1 | Symbols: | Pectin lyase-like superfamily protein... 1936 0.0
> AT3G14040.1 | Symbols: | Pectin lyase-like superfamily protein
| chr3:4648348-4650319 REVERSE LENGTH=1690
Length=1690
Score = 2017 bits (1092), Expect = 0.0
Identities = 1273/1357 (94%), Gaps = 26/1357 (2%)
Strand=Plus/Plus
Query 1 ATGGTGGGTTTTCGCAGAGCAAGCGGAGTGCTTCTTGTGGTATTAGTGGTTATGGCCACC 60
|||||||||| || || |||||||||||||||||||||| || |||||||||||||||||
Sbjct 94 ATGGTGGGTTCTCACAAAGCAAGCGGAGTGCTTCTTGTGCTACTAGTGGTTATGGCCACC 153
Query 61 ACAATAGTAAACGGGACACCGGTTGTCGATAAAGCAAAAGATGCAGCTGA-ATCAGTTGG 119
||||||| |||||||||||| |||||||||| ||||||| |||||||| | | ||||||
Sbjct 154 ACAATAGCAAACGGGACACCTGTTGTCGATACAGCAAAAAATGCAGCT-ACAGCAGTTGA 212
Query 120 CGATAAAGTCAGTGAA-GCAGCTACAACAGTTGGCGATAAAGCAAAAAATGCAGCTGCAT 178
|||| || || || ||||||||| ||||||||| | |||||||||||
Sbjct 213 AGATACAG-CAAAAAATGCAGCTACAGCAGTTGGCG-----G-------TGCAGCTGCAT 259
Query 179 CAGTTGGTGTTAAAGTACCAGGAGCCAAAGCAGGCGGTGCATCACTTGATATTAAAGCAT 238
||||||||| ||||||| |||| |||||| |||||||||||||||||||| |||||||||
Sbjct 260 CAGTTGGTGCTAAAGTAACAGGTGCCAAACCAGGCGGTGCATCACTTGATGTTAAAGCAT 319
Query 239 CAGGAGCTAAAGGAGATGGTAAAACTGATGACAGTGCGGCATTTGCGGCTGCATGGAAAG 298
||||||| |||||||| || ||||||||||| ||||||||||||||||||||||||||||
Sbjct 320 CAGGAGCCAAAGGAGACGGCAAAACTGATGATAGTGCGGCATTTGCGGCTGCATGGAAAG 379
Query 299 AAGCATGTGCAGCAGGGAGCACGATTACAGTGCCAAAAGGTGAGTATTTGGTAGAGAGCC 358
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 380 AAGCTTGTGCAGCAGGGAGCACGATTACAGTGCCAAAAGGTGAGTATTTGGTAGAGAGCC 439
Query 359 TAGAGTTCAAAGGTCCATGCAAAGGTCCAGTCACTTTGGAATTGAATGGCAATCTTAAGG 418
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 440 TAGAGTTCAAAGGTCCATGCAAAGGTCCAGTCACTTTGGAATTGAATGGCAATTTTAAGG 499
Query 419 CTCCGGCTACGGTCAAGACCTCTAAACCTCATTCCGGATGGATTGATTTCGAAAA-CATC 477
|||||||||||||||||||| |||| |||||| |||||||||||||||||||||| | ||
Sbjct 500 CTCCGGCTACGGTCAAGACCACTAAGCCTCATGCCGGATGGATTGATTTCGAAAATC-TC 558
Query 478 GCTGATTTCACTTTGAATGGAAACGGAGCCATTTTTGACGGTCAAGGTTCCCTCGCTTGG 537
|||||||||||||||||||||||| ||| ||||||||||||||||| ||||||||||||
Sbjct 559 GCTGATTTCACTTTGAATGGAAACAAAGCTATTTTTGACGGTCAAGGGTCCCTCGCTTGG 618
Query 538 AAGGCCAATGACTGCGCCAAAACCGGCAAATGCAACTCTCTCCCCATCAACATCCGATTC 597
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 619 AAGGCCAATGACTGCGCCAAAACCGGCAAATGCAACTCTCTCCCTATCAACATCCGATTC 678
Query 598 ACGGGTCTAACAAACTCGAAA-ATTAAGAGTATTACATCAACAAACAGCAAACTTTTCCA 656
|| |||||||||||||| ||| ||||| ||||||||||||||||||||||| ||||||||
Sbjct 679 ACTGGTCTAACAAACTC-AAAGATTAACAGTATTACATCAACAAACAGCAAGCTTTTCCA 737
Query 657 CATGAACATCCTTAACTGCAAAAACATAACTCTTGA-GGATATTGGTATTGATGCACCTC 715
||||||||||||||||||||| |||||||||||| | |||||| ||||||||||||||||
Sbjct 738 CATGAACATCCTTAACTGCAAGAACATAACTCTT-ACGGATATCGGTATTGATGCACCTC 796
Query 716 CGGAGAGTCTCAACACCGATGGGATCCACATCGGAAGGTCCAATGGCGTCAACTT-ATTA 774
|||||||||||||||||||||| ||||||||||||||||||||||| |||||||| |||
Sbjct 797 CGGAGAGTCTCAACACCGATGGTATCCACATCGGAAGGTCCAATGGAGTCAACTTAATT- 855
Query 775 GGGGCAAAGATTAAAACCGGAGATGACTGCGTTTCCATTGGAGATGGTACCGAAAATCTC 834
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 856 GGGGCAAAGATTAAAACCGGAGATGACTGCGTTTCCATTGGAGATGGTACCGAAAATCTC 915
Query 835 ATTGTTGAGAACGTAGAATGTGGACCGGGACACGGAATTTCCATTGGAAGTCTCGGAAGA 894
|||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 916 ATTGTTGAGAACGTAGAATGTGGACCAGGACACGGAATTTCCATTGGAAGTCTTGGAAGA 975
Query 895 TACCCTAATGAGCAACCAGTAAAAGGAGTCACTGTGAGGAAATGCCTCATCAAGAACACT 954
||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 976 TACCCTAATGAACAACCAGTAAAAGGAGTCACCGTGAGGAAATGCCTCATCAAGAACACT 1035
Query 955 GACAATGGTGTTCGCATCAAGACATGGCCAGGATCTCCCCCCGGTATCGCCTCCAACATT 1014
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1036 GACAATGGTGTTCGCATCAAGACATGGCCAGGATCTCCCCCCGGTATCGCCTCCAACATT 1095
Query 1015 CTTTTCGAAGATATCACAATGGACAATGTTAGCACC-CCCGTTCTCATCGACCAAGAGTA 1073
||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 1096 CTTTTCGAAGATATCACAATGGACAATGTTAGC-CTTCCCGTTCTCATCGACCAAGAGTA 1154
Query 1074 CTGTCCTTATGGCCACTGCAAAGCTGGGGTACCATCGAAAGTGAAGTTGTCGGACGTGAC 1133
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1155 CTGTCCTTATGGCCACTGCAAAGCTGGGGTACCATCGAAAGTGAAGTTGTCAGACGTGAC 1214
Query 1134 TATCAAGAACATTAAGGGTACATCAGCAACAAAGGTGGCTGTGAAGCTAATGTGCAGTAA 1193
|||||||||||||||||| ||||||||||||||||| || ||||||||||||||||| ||
Sbjct 1215 TATCAAGAACATTAAGGGAACATCAGCAACAAAGGTAGCAGTGAAGCTAATGTGCAGCAA 1274
Query 1194 AGGCGTTCCTTGCACCAATATTGCTCTCGCTGACATCAACTTGGTCCACAACGGCAAAGA 1253
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1275 AGGCGTTCCTTGCACCAATATTGCTCTCTCTGACATCAACTTGGTCCACAACGGCAAAGA 1334
Query 1254 GGGACCAGCTGTCTCGGCATGTTCTAACATCAAGCCTATTCTCTCCGGAAAGTTGGTTCC 1313
||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1335 GGGACCAGCTGTCTCAGCATGTTCTAACATCAAGCCTATTCTCAGCGGAAAGTTGGTTCC 1394
Query 1314 AGCGGCTTGCACTGAAGTCGCTAAAACGGGTCCTTAA 1350
||||||||||||||||||||||||| |||||||||||
Sbjct 1395 AGCGGCTTGCACTGAAGTCGCTAAACCGGGTCCTTAA 1431
> AT3G07850.1 | Symbols: | Pectin lyase-like superfamily protein
| chr3:2505547-2507528 REVERSE LENGTH=1691
Length=1691
Score = 1936 bits (1048), Expect = 0.0
Identities = 1258/1356 (93%), Gaps = 27/1356 (2%)
Strand=Plus/Plus
Query 1 ATGGTGGGTTTTCGCAGAGCAAGCGGAGTGCTTCTTGTGGTATTAGTGGTTATGGCCACC 60
|||||||||| || || |||||||||||||||||||||| || |||||||||||||||||
Sbjct 91 ATGGTGGGTTCTCACAAAGCAAGCGGAGTGCTTCTTGTGCTACTAGTGGTTATGGCCACC 150
Query 61 ACAATAGTAAACGGGACACCGGTTGTCGATAAAGCAAAAGATGCAGCTGA-ATCAGTTGG 119
||||||| ||||||||||||||||||||||||||||||| |||||||| | | ||||||
Sbjct 151 ACAATAGCAAACGGGACACCGGTTGTCGATAAAGCAAAAAATGCAGCT-ACAGCAGTTGA 209
Query 120 CGATAAAGTCAGTGAA-GCAGCTACAACAGTTGGCGATAAAGCAAAAAATGCAGCTGCAT 178
|||| || || || ||||||||| ||||||||| | |||||||||||
Sbjct 210 AGATACAG-CAAAAAATGCAGCTACAGCAGTTGGCG-----G-------TGCAGCTGCAT 256
Query 179 CAGTTGGTGTTAAAGTACCAGGAGCCAAAGCAGGCGGTGCATCACTTGATATTAAAGCAT 238
||||||||| ||||||| |||| |||||| ||||| ||| || ||||| |||||||||
Sbjct 257 CAGTTGGTGCTAAAGTATCAGGTGCCAAACCAGGC---GCAGCAGTTGATGTTAAAGCAT 313
Query 239 CAGGAGCTAAAGGAGATGGTAAAACTGATGACAGTGCGGCATTTGCGGCTGCATGGAAAG 298
||||||| |||||||| | ||||||||||| ||||||||||||||||||||||||||||
Sbjct 314 CAGGAGCCAAAGGAGACAGCAAAACTGATGATAGTGCGGCATTTGCGGCTGCATGGAAAG 373
Query 299 AAGCATGTGCAGCAGGGAGCACGATTACAGTGCCAAAAGGTGAGTATTTGGTAGAGAGCC 358
|||| ||||||||||||||||| |||||||||||||||||||||||| ||||||||||||
Sbjct 374 AAGCTTGTGCAGCAGGGAGCACAATTACAGTGCCAAAAGGTGAGTATATGGTAGAGAGCC 433
Query 359 TAGAGTTCAAAGGTCCATGCAAAGGTCCAGTCACTTTGGAATTGAATGGCAATCTT-AAG 417
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 434 TAGAGTTCAAAGGTCCATGCAAAGGTCCAGTCACTTTGGAATTGAATGGCAAT-TTCAAG 492
Query 418 GCTCCGGCTACGGTCAAGACCTCTAAACCTCATTCCGGATGGATTGATTTCGAAAACATC 477
||||||||||||||||||||| |||| || ||| |||||||||||||||||||||| ||
Sbjct 493 GCTCCGGCTACGGTCAAGACCACTAAGCCACATGCCGGATGGATTGATTTCGAAAATATA 552
Query 478 GCTGATTTCACTTTGAATGGAAACGGAGCCATTTTTGACGGTCAAGGTTCCCTCGCTTGG 537
|||||||||||||||||||||||| ||| ||||||||||||||||| ||||||||||||
Sbjct 553 GCTGATTTCACTTTGAATGGAAACAAAGCTATTTTTGACGGTCAAGGGTCCCTCGCTTGG 612
Query 538 AAGGCCAATGACTGCGCCAAAACCGGCAAATGCAACTCTCTCCCCATCAACATCCGATTC 597
||||||||||| || |||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 613 AAGGCCAATGATTGTGCCAAAACTGGCAAATGCAACTCTCTCCCTATCAACATCCGATTC 672
Query 598 ACGGGTCTAACAAACTCGAAA-ATTAAGAGTATTACATCAACAAACAGCAAACTTTTCCA 656
|| |||||||||||||| ||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 673 ACTGGTCTAACAAACTC-AAAGATTAATAGTATTACATCAACAAACAGCAAACTTTTCCA 731
Query 657 CATGAACATCCTTAACTGCAAAAACATAACTCTTGAGGATATTGGTATTGATGCACCTCC 716
||||||||||||||||||||| ||||| |||||| ||||||||||||||||||||||||
Sbjct 732 CATGAACATCCTTAACTGCAAGAACATTACTCTTTCGGATATTGGTATTGATGCACCTCC 791
Query 717 GGAGAGTCTCAACACCGATGGGATCCACATCGGAAGGTCCAATGGCGTCAACTT-ATTAG 775
||||||||||||||||||||| ||||||||||||||||||||||| |||||||| ||| |
Sbjct 792 GGAGAGTCTCAACACCGATGGTATCCACATCGGAAGGTCCAATGGAGTCAACTTAATT-G 850
Query 776 GGGCAAAGATTAAAACCGGAGATGACTGCGTTTCCATTGGAGATGGTACCGAAAATCTCA 835
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 851 GGGCAAAGATCAAAACCGGAGATGACTGCGTTTCCATTGGAGATGGTACCGAAAATCTCA 910
Query 836 TTGTTGAGAACGTAGAATGTGGACCGGGACACGGAATTTCCATTGGAAGTCTCGGAAGAT 895
||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 911 TTGTTGAGAACGTAGAATGTGGACCAGGACACGGAATTTCCATTGGAAGTCTTGGAAGAT 970
Query 896 ACCCTAATGAGCAACCAGTAAAAGGAGTCACTGTGAGGAAATGCCTCATCAAGAACACTG 955
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 971 ACCCTAATGAGCAACCAGTAAAAGGAGTCACCGTGAGGAAATGCCTCATCAAGAACACTG 1030
Query 956 ACAATGGTGTTCGCATCAAGACATGGCCAGGATCTCCCCCCGGTATCGCCTCCAACATTC 1015
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1031 ACAATGGTGTTCGCATCAAGACATGGCCAGGATCTCCCCCCGGCATCGCCTCCAACATTC 1090
Query 1016 TTTTCGAAGATATCACAATGGACAATGTTAGCACC-CCCGTTCTCATCGACCAAGAGTAC 1074
|||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 1091 TTTTCGAAGATATCACAATGGACAATGTTAGC-CTTCCCGTTCTCATCGACCAAGAGTAC 1149
Query 1075 TGTCCTTATGGCCACTGCAAAGCTGGGGTACCATCGAAAGTGAAGTTGTCGGACGTGACT 1134
|||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||
Sbjct 1150 TGTCCTTATGGCCACTGCAAAGCTGGGGTACCATCGCAAGTGAAGTTGTCAGACGTGACT 1209
Query 1135 ATCAAGAACATTAAGGGTACATCAGCAACAAAGGTGGCTGTGAAGCTAATGTGCAGTAAA 1194
|||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1210 ATCAAGGGCATTAAGGGTACATCAGCAACAAAGGTGGCTGTGAAGCTAATGTGCAGCAAA 1269
Query 1195 GGCGTTCCTTGCACCAATATTGCTCTCGCTGACATCAACTTGGTCCACAACGGCAAAGAG 1254
|| || ||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1270 GGAGTGCCTTGCACCAATATTGCTCTCTCTGACATCAACTTGGTCCACAACGGCAAAGAG 1329
Query 1255 GGACCAGCTGTCTCGGCATGTTCTAACATCAAGCCTATTCTCTCCGGAAAGTTGGTTCCA 1314
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1330 GGACCAGCTGTCTCGGCATGTTCTAACATCAAGCCTATTCTCAGCGGAAAGTTGGTTCCA 1389
Query 1315 GCGGCTTGCACTGAAGTCGCTAAAACGGGTCCTTAA 1350
||||||||||||||||| |||||| ||||||| |||
Sbjct 1390 GCGGCTTGCACTGAAGTTGCTAAACCGGGTCCATAA 1425
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66465521580
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5