BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg318207

Length=582
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G14190.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   854    0.0  


> AT3G14190.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT5G12360.1); 
Has 18 Blast hits to 18 proteins in 5 species: Archae - 0; 
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 18; Viruses 
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:4710483-4711969 
FORWARD LENGTH=903
Length=903

 Score =  854 bits (462),  Expect = 0.0
 Identities = 549/589 (93%), Gaps = 14/589 (2%)
 Strand=Plus/Plus

Query  1    ATGGCGAATATGAACGCTCTTCAACAGATGATCTTCCCAGACGAGAACGCTCCGATTCAT  60
            |||||||| ||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct  143  ATGGCGAACATGAACGCTCTTCAACAAATGATCTTCCCAGACGAGAACGCTCCAATTCAT  202

Query  61   CGCAAAAAGTCTGTTACTGCTGCTTCTGTGAAATCCAAAGGAACTGTACTTGGTCAGAAG  120
            |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct  203  CGCAAAAAGTCTGTCACTGCTGCTTCTGTGAAATCCAAAGGGACTGTACTTGGTCAGAAG  262

Query  121  AAACCTGGAGGAGCTCGTAAAGCTCTGAATGATATTACAAACAAGTCTGGGATTCATGCG  180
            |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct  263  AAACCTGGAGGAGCTCGTAAGGCTCTGAATGATATTACAAACAAGTCTGGGATTCATGCG  322

Query  181  AAA------GCTTCTTCAAAGAATAAGCAAATTGCTTCTGCTGCTGCTGCGAAAGATGAG  234
            |||      |||||||||||||| |||||||||||||||||||||| |  | || | |||
Sbjct  323  AAAGCTGCTGCTTCTTCAAAGAACAAGCAAATTGCTTCTGCTGCTG-T--G-AA-A-GAG  376

Query  235  ATTGACATAGCTGGGGAAAGGTTCTTACATGATCACAGCAAATGCATCAAAGAACAGCAA  294
            ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct  377  ATTGATATAGCTGGGGAAAGGTTTTTACATGATCACAGCAAATGCATCAAAGAACAGCAA  436

Query  295  AGTCTCTGGGATGATCACTACTCTTCTGATCTCATTCTACTTCATCATGAATCCAGCATC  354
            | ||| |||||||||||||||||| |||||||||| |||||||||||||  |||||||||
Sbjct  437  AATCTTTGGGATGATCACTACTCTGCTGATCTCATGCTACTTCATCATGGTTCCAGCATC  496

Query  355  AAGGAGAAGCATCTCAGCTATGACATTGAAAAGATGGATGCTAAGGACAG-TCTGACTTA  413
            ||||||||||||||||  |  ||||||||||||||||||||||||||| | |||||||||
Sbjct  497  AAGGAGAAGCATCTCAATTGGGACATTGAAAAGATGGATGCTAAGGAC-GATCTGACTTA  555

Query  414  CGAAGAACCAGAAGAGATGGCATCACCAAAGTTGTCTGATTGGCTGAAGAACTCGACTCC  473
            |||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||
Sbjct  556  CGAAGAACCAGAAGAGATGGCATCGCCCAAGTTTTCTGATTGGCTGAAGAACTCGACTCC  615

Query  474  ATGGCGCTCTCCAATCCGCCATGGCTCTATGATGCCTTCCACTCCTCTGGCTTGGCGGTT  533
            |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct  616  ATGGCGCTCTCCAATCCGTCATGGCTCTATGATGCCTTCCACTCCTCTGGCTTGGCGGTT  675

Query  534  CGATTCAAGTGAATTCACACTTAAAGAACACTCTGACGACCTCTTCTGA  582
            ||||||| | |||||||||||||||||| ||||||||||||||||||||
Sbjct  676  CGATTCATGCGAATTCACACTTAAAGAAGACTCTGACGACCTCTTCTGA  724



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 27980419879


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5