BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg318218
Length=1767
Score E
Sequences producing significant alignments: (Bits) Value
AT3G14300.1 | Symbols: ATPMEPCRC, ATPME26, PME26 | pectinestera... 1509 0.0
> AT3G14300.1 | Symbols: ATPMEPCRC, ATPME26, PME26 | pectinesterase
family protein | chr3:4766905-4769898 REVERSE LENGTH=2907
Length=2907
Score = 1509 bits (817), Expect = 0.0
Identities = 1308/1534 (85%), Gaps = 77/1534 (5%)
Strand=Plus/Plus
Query 229 CTCAGAACTGTGTGTAGCGTAACTCGTTACCCTGCTTCTTGTATCTCAAGCATCTCGAAG 288
|||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct 1375 CTCAGAACTGTGTGTAATGTAACTAATTACCCTGCTTCTTGTATCTCAAGCATCTCGAAG 1434
Query 289 CTTCCATCGTCC--AAC-ACGACGGATCCGGAGGTTTTATTCAGGCTTTCGTTACAAGTT 345
||||||| ||| ||| ||||| |||||| |||||||||||||||||||||||||||||
Sbjct 1435 CTTCCATTATCCAAAACGACGACAGATCCGAAGGTTTTATTCAGGCTTTCGTTACAAGTT 1494
Query 346 GTC-GTCGACGAACTCAATTCGATCGCCGATTTACCGAAGAAGCTCGCGGAAGAGACGGA 404
| |||||||||||||||| |||| | |||||||||||| |||||||||||||| |
Sbjct 1495 -ACATTCGACGAACTCAATTCCATCGTTGGTTTACCGAAGAAACTCGCGGAAGAGACTAA 1553
Query 405 CGATGAGAGAATCAAATCGGCGCTTGGTGTTTGCGGAGATCTGTTCGACGAAGCGATTGA 464
|||||| || |||||||||||||| ||||||||| |||| |||||||| ||| ||||
Sbjct 1554 TGATGAGGGACTCAAATCGGCGCTTAGTGTTTGCGCAGATGTGTTCGACCTCGCGGTTGA 1613
Query 465 -TCGTGTTAACGAAACTGTTTCCGCCAT-G--GAAG---TTGGTGACGGGAAGAAGATTT 517
|| |||||||| ||| ||||| || | | |||| || ||| ||||||||||| ||
Sbjct 1614 TTC-AGTTAACGATACTATTTCCTCCTTGGATGAAGTAATTAGTGGCGGGAAGAAGAATT 1672
Query 518 TGAATTCG-AAGACGATCGACGATCTCCA-AACTTGGCTTAGCGCCGCCGTGACAGATCA 575
|||||||| | ||||||| |||||| || ||| ||||||||| ||||||| |||||| |
Sbjct 1673 TGAATTCGTCA-ACGATCGGCGATCT-CATAACGTGGCTTAGCTCCGCCGTAACAGAT-A 1729
Query 576 -CGACACGTGTCTCGACGCGCTTGATGAACTCAGCCAGAACAAAACCGAGTACGCGAATT 634
|| |||||| |||| ||||||||| | || | || | || | || |
Sbjct 1730 TCGGGACGTGTGGCGACACGCTTGATG-----A---AG---ATAA-C---TA--C-AACT 1771
Query 635 CAGCAATCTCACTGAAGCTCAAATCCGCCATGGTTAATTCAACCGAGTTCACAAGCAACA 694
|| ||||| ||| |||||| |||||||||||||||||||| || ||||||||||||||||
Sbjct 1772 CACCAATCCCACAGAAGCTTAAATCCGCCATGGTTAATTCCACAGAGTTCACAAGCAACA 1831
Query 695 GCTTAGCGATCGTCGCGAAGATTCTCTCTACTTTAAGCGATTTC-GGGATTTCGATTCAC 753
||||||| ||||||||| || ||||| | |||| | || |||| || ||||
Sbjct 1832 GCTTAGCCATCGTCGCGCAGGTTCTCAAAAAACCAAGC-AAGTCTAGGATCCCGGTTCAG 1890
Query 754 CGGAGACGGCTTCTAAACTCGAATTCGTTTCCAAATTGGGTTA-ACCCAGGGGTGAGGCG 812
|||||||||| || |||||||||||||||||||||||||||| | ||||| ||||||||
Sbjct 1891 GGGAGACGGCTACTTAACTCGAATTCGTTTCCAAATTGGGTTAGA-CCAGGAGTGAGGCG 1949
Query 813 GTTACTTCAGGCGAAGAATTTAACTCCTAATGTCACGGTGGCGGCGGATGGCTCCGGCGA 872
||||||||| |||||||| ||||| ||| |||| ||||||||||||||||||||||||||
Sbjct 1950 GTTACTTCAAGCGAAGAACTTAACGCCTCATGTTACGGTGGCGGCGGATGGCTCCGGCGA 2009
Query 873 TGTGAGGACGGTGAATGAAGCGGT--GGAGAGAATTCCGAAGAATGGGACAACGATGTTT 930
|||||||||||||||||||||||| |||||| |||||||||| |||| ||||||||||
Sbjct 2010 TGTGAGGACGGTGAATGAAGCGGTTTGGAGAG--TTCCGAAGAAGGGGAAAACGATGTTT 2067
Query 931 GTTATATACGTGAAAGCTGGTACGTATGTGGAGAATGTGCTTTTGGATAAG-AGTAAATG 989
||||||||||||||||| |||||||||||||||||||| ||| || | ||| | ||||||
Sbjct 2068 GTTATATACGTGAAAGCAGGTACGTATGTGGAGAATGTCCTTATGAAAAAGGA-TAAATG 2126
Query 990 GAATGTTTTTATCTACGGCGACGGCAAGGATAAGACCATTATTTCCGGTAGCAAGAACTA 1049
|||||| ||||||||||||||||||| |||||||||||||||||||||||||| ||| |
Sbjct 2127 GAATGTGTTTATCTACGGCGACGGCAGGGATAAGACCATTATTTCCGGTAGCACTAAC-A 2185
Query 1050 CG-TCGACGGGACATC-TACTTTCAAAACGGCGACGTTTGCAACTCAAGGCAAAGGATTT 1107
| |||||||| || ||||||||| || | |||||||||||| ||||||||||||||
Sbjct 2186 TGGTCGACGGGGT-TCGTACTTTCAATACCTCCACGTTTGCAACTGAAGGCAAAGGATTT 2244
Query 1108 ATGATGAAGGACATCGGAATCATAAACACCGCCGGACCAGAGAAGCATCAAGCGGTGGCG 1167
|||||||||||||| |||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 2245 ATGATGAAGGACATGGGAATCATAAACACCGCCGGGCCAGAGAAGCATCAAGCGGTAGCA 2304
Query 1168 TTCCGATCAGGAT-CCGATTTATCAGTCTACTATCAATGCTCATTCGATGGTTTCCAAGA 1226
|||||||||| || ||||| ||||||||||||| ||| |||||||| || | ||||||
Sbjct 2305 TTCCGATCAG-ATTCCGATCGGTCAGTCTACTATCGATGTTCATTCGACGGCTACCAAGA 2363
Query 1227 TACTCTTTATCCTCATTCAAATCGTCAATTCTACCGCAACTGCGACGTCACCGGAACAGT 1286
|||||||||| |||| |||||||| |||| ||| || ||||| |||||||||||||||||
Sbjct 2364 TACTCTTTATACTCACTCAAATCGACAATACTATCGTAACTGTGACGTCACCGGAACAGT 2423
Query 1287 TGATTTCATCTTCGGAGCCG-CAACCGTCGTCTTCCAAGGCTGCAACATCAGGCCGCGTC 1345
|||||||||||||||||| | || | ||||||||||||||||||| |||| | |||||||
Sbjct 2424 TGATTTCATCTTCGGAGCTGGCA-CAGTCGTCTTCCAAGGCTGCAGCATCCGTCCGCGTC 2482
Query 1346 AGCCGCTTCCGAATCAGTACAACACAATCACTGCTGAAGGTA-A-AA-AGGATAAGCATC 1402
|||||||||||||||||| |||||||||||| |||||||||| | || ||| || ||
Sbjct 2483 AGCCGCTTCCGAATCAGTTCAACACAATCACCGCTGAAGGTACACAAGAGGCCAA---TC 2539
Query 1403 AGAACTCCGGAACCTCGATCCAACGATGCACAATCTCTGCCAACGGAAATGTAACTGCTC 1462
||||| | |||| |||||||| | ||||||||||||| ||||||||||||||||||||
Sbjct 2540 AGAACACGGGAATATCGATCCACCAATGCACAATCTCTCCCAACGGAAATGTAACTGCTA 2599
Query 1463 CGACGTATCTTGGCCGTCCGTGGAAAGAGTTTTC-AACGACGGTGATTATGCAATCGGTG 1521
|||||||||||||||||||||||||| |||||| || |||||| |||||||||||||||
Sbjct 2600 CGACGTATCTTGGCCGTCCGTGGAAATTGTTTTCGAA-GACGGTTATTATGCAATCGGTG 2658
Query 1522 ATTGGGTCGGTCGTGAATCCCGTTGGGTGGATTGCGTGGAATTCGACTCT-TGACCCGCC 1580
||||||||| |||||||||||| ||||||||||||||||||||||||| | |||||||||
Sbjct 2659 ATTGGGTCGTTCGTGAATCCCGCTGGGTGGATTGCGTGGAATTCGACT-TATGACCCGCC 2717
Query 1581 TCCGA-GTACTAT-TCTCTATGGAGAGTACAAGAATTCGGGTCCTGGGTCGGATGTGACC 1638
||| | ||||||| | ||||| |||||||||||||||| ||||||||||||||| | | |
Sbjct 2718 TCC-ACGTACTATAT-TCTATAGAGAGTACAAGAATTCAGGTCCTGGGTCGGATCT-ATC 2774
Query 1639 CA-GAGAGTTAAATGGGCTGGGTATAAGCCCATTAT-GTCTGATGATGAGGCAGGAAGAT 1696
|| ||||||||||||||||||||||||||||||| | ||||||||||||||| | ||| |
Sbjct 2775 CAAGAGAGTTAAATGGGCTGGGTATAAGCCCATT-TCGTCTGATGATGAGGCTGCAAGGT 2833
Query 1697 TTACGGTT--GCCACGTTTCTCCGAGGGGCTGAT 1728
|||||||| | | ||||||||||||| ||||
Sbjct 2834 TTACGGTTAAGT-AT-TTTCTCCGAGGGGATGAT 2865
Score = 870 bits (471), Expect = 0.0
Identities = 678/776 (87%), Gaps = 21/776 (3%)
Strand=Plus/Plus
Query 1 ATGGATACTGTCAAGTCAATCAACAAAGGCTATGGCAAAGTAGACGAAGCTGAAGATTTG 60
||||||||||||||||||||||||||||||||||||||||| |||||| || ||||||||
Sbjct 1 ATGGATACTGTCAAGTCAATCAACAAAGGCTATGGCAAAGTTGACGAAACTCAAGATTTG 60
Query 61 GCGTTGAAGAGAAAGACGCGGAAGCGGTTGTTTCTCATAGGCGTTTCCGTGGTGGTTCTG 120
|||||||||||||||||| | ||||| |||| || |||||| ||||||||| ||||||
Sbjct 61 GCGTTGAAGAGAAAGACGAGAAAGCGTTTGTATCAAATAGGCATTTCCGTGGCAGTTCTG 120
Query 121 GTGTCGATTCTCATCAGCTCCGTCGTCGCCGTCGCTGTTCATAGCCGGAAAAACAATTCA 180
||| ||||| ||||||||||| |||| || |||| |||| ||||||||| |||||||
Sbjct 121 GTGGCGATTATCATCAGCTCCACCGTCACCATCGCAATTCACAGCCGGAAAGGCAATTCA 180
Query 181 CCAAATCCAACACCGAGTTCAGTCAACGAGTTGACTCCCGCCGCTTCACTCAGAACTGTG 240
||| |||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 181 CCACATCCAACACCGAGTTCAGTCCCCGAGTTGACTCCCGCCGCTTCACTCAAAACTGTG 240
Query 241 TGTAGCGTAACTCGTTACCCTGCTTCTTG-TATCTCAAGCATCTCGAAGCTTCCATCGTC 299
|||||||||||| |||||||| |||||| | |||||||||||||||||||||||| |||
Sbjct 241 TGTAGCGTAACTAATTACCCTGTTTCTTGCT-TCTCAAGCATCTCGAAGCTTCCATTGTC 299
Query 300 CAACACGACGGATCCGGAGGTTTTATTCAGGCTTTCGTTACAAGTTGTCGTCGACGAACT 359
|||||||||||||||||||||| ||||||||||||| |||||||||||| | ||||||||
Sbjct 300 CAACACGACGGATCCGGAGGTTATATTCAGGCTTTCTTTACAAGTTGTCATTGACGAACT 359
Query 360 CAATTCGATCGCCGATTTACCGAAGAAGCTCGCGGAAGAGACGGACGATGAGAGAATCAA 419
||| || |||| || ||||||||||||||||| |||||||||||||||||| || ||||
Sbjct 360 CAACTCAATCGTTGAGTTACCGAAGAAGCTCGCTGAAGAGACGGACGATGAGGGACTCAA 419
Query 420 ATCGGCGCTTGGTGTTTGCGGAGATCTGTTCGACGAAGCGATTGATCGTGTTAACGAAAC 479
|||||||||| ||||||||| | ||||||| ||| || ||||||||||||||||||||
Sbjct 420 ATCGGCGCTTAGTGTTTGCGAACATCTGTTAGACCTCGCTATTGATCGTGTTAACGAAAC 479
Query 480 TGTTTCCGCCATGGAAGTTGGTGACGGGAAGAAGATTTTGAATTC-GAAGACGATCGACG 538
|||||||||||||||||||| |||||||||||||||||||||| | | ||| || ||||
Sbjct 480 TGTTTCCGCCATGGAAGTTGTTGACGGGAAGAAGATTTTGAATGCTGC-GACCATTGACG 538
Query 539 ATCTCCAAACTTGGCTTAGCGCCGCCGTGACAGATCACG-ACACGTGTCTCGACGCGCTT 597
|||||| |||||||| |||||||| |||||| | |||| | ||||||||||||||||||
Sbjct 539 ATCTCCTTACTTGGCTCAGCGCCGCTGTGACATACCACGGA-ACGTGTCTCGACGCGCTT 597
Query 598 GATGAACTCAGCCAGAACAAAACCGAGTACGCGAATTCAGCAATCTCACTGAAGCTCAAA 657
|||||| ||||||| || | || | |||||||||| |||||||||| |||
Sbjct 598 GATGAAATCAGCCA---CA---C-GA--A------TTCAGCAATCCCACTGAAGCTTAAA 642
Query 658 TCCGCCATGGTTAATTCAACCGAGTTCACAAGCAACAGCTTAGCGATCGTCGCGAAGATT 717
|| | ||||||||| || |||||||||||||| ||||||||||||||||| |||||||||
Sbjct 643 TCTGGCATGGTTAACTCGACCGAGTTCACAAGTAACAGCTTAGCGATCGTTGCGAAGATT 702
Query 718 CTCTCTACTTTAAGCGATTTCGGGATTTCGATTCACCGGAGACGGCTTCTAAACTC 773
|||||||| |||||||||| ||||| |||||||| |||||||||||||||||||
Sbjct 703 CTCTCTACAATAAGCGATTTTGGGATCCCGATTCACGGGAGACGGCTTCTAAACTC 758
Score = 691 bits (374), Expect = 0.0
Identities = 489/545 (90%), Gaps = 5/545 (1%)
Strand=Plus/Plus
Query 178 TCACCAAATCCAACACCGAGTTCAGTCAACGAGTTGACTCCCGCCGCTTCACTCAGAACT 237
|||||| || ||||||| | ||||||| | ||||||||||||||||||||||||||| |
Sbjct 760 TCACCACATGCAACACCAATTTCAGTCCCCAAGTTGACTCCCGCCGCTTCACTCAGAAAT 819
Query 238 GTGTGTAGCGTAACTCGTTACCCTGCTTCTTGTATCTCAAGCATCTCGAAGCTTCCATCG 297
|| || ||||||||||||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct 820 GTATGCAGCGTAACTCGTTACCCTGCTTCTTGTGTCTCAAGCATCTCAAAGCTTCCATCG 879
Query 298 TCCAACACGACGGATCCGGAGGTTTTATTCAGGCTTTCGTTACAAGTTGTCGTCGACGAA 357
|| ||||||||||||||||||| |||||||||||||||||||||||||||| || |||||
Sbjct 880 TCTAACACGACGGATCCGGAGGCTTTATTCAGGCTTTCGTTACAAGTTGTCATCAACGAA 939
Query 358 CTCAATTCGATCGCCGATTTACCGAAGAAGCTCGCGGAAGAGACGGACGATGAGAGAATC 417
|||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| ||
Sbjct 940 CTCAATTCGATCGCCGGTTTACCGAAGAAGCTCGCCGAAGAGACGGACGATGAGAGACTC 999
Query 418 AAATCGGCGCTTGGTGTTTGCGGAGATCTGTTCGACGAAGCGATTGATCGT-GTTAACGA 476
|||||| | ||| ||||||| |||||| ||||| |||| ||||||||| | || |||||
Sbjct 1000 AAATCGTCTCTTAGTGTTTGTGGAGATGTGTTCAACGACGCGATTGATA-TAGTCAACGA 1058
Query 477 AACTGTTTCCGCCATGGAAG---TTGGTGACGGGAAGAAGATTTTGAATTCGAAGACGAT 533
||| ||||| ||||||||| ||||||||||||||||||||||||| ||| ||| ||
Sbjct 1059 TACTATTTCCACCATGGAAGAAGTTGGTGACGGGAAGAAGATTTTGAAGTCGTCGACCAT 1118
Query 534 CGACGATCTCCAAACTTGGCTTAGCGCCGCCGTGACAGATCACGACACGTGTCTCGACGC 593
|||||| | ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1119 CGACGAGATTCAAACTTGGCTTAGCGCCGCCGTAACAGATCACGACACGTGTCTCGACGC 1178
Query 594 GCTTGATGAACTCAGCCAGAACAAAACCGAGTACGCGAATTCAGCAATCTCACTGAAGCT 653
|||||||||||||||||||||||||| ||||||||||||||| |||||||||| |||||
Sbjct 1179 ACTTGATGAACTCAGCCAGAACAAAACAGAGTACGCGAATTCACCAATCTCACTAAAGCT 1238
Query 654 CAAATCCGCCATGGTTAATTCAACCGAGTTCACAAGCAACAGCTTAGCGATCGTCGCGAA 713
|||||||||||||| ||||| | |||||||||||||||||||||||||| |||||||
Sbjct 1239 TAAATCCGCCATGGTCAATTCCAGAAAGTTCACAAGCAACAGCTTAGCGATCATCGCGAA 1298
Query 714 GATTC 718
| |||
Sbjct 1299 GTTTC 1303
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 87399148845
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5