BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg318283
Length=906
Score E
Sequences producing significant alignments: (Bits) Value
AT3G15080.1 | Symbols: | Polynucleotidyl transferase, ribonucl... 989 0.0
> AT3G15080.1 | Symbols: | Polynucleotidyl transferase, ribonuclease
H-like superfamily protein | chr3:5074216-5076524 FORWARD
LENGTH=1128
Length=1128
Score = 989 bits (535), Expect = 0.0
Identities = 642/690 (93%), Gaps = 22/690 (3%)
Strand=Plus/Plus
Query 222 AGGGAAGCGGAAGGAGAGACCCGATTCAGAGGTTGATGTTCCTAAGATTAATCCCTTATC 281
||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| |
Sbjct 259 AGGGAAGCGAAAGGAGAGACCCGATTCGGAGGTTGATGTTCCTAAGATTAATCCCTTAGC 318
Query 282 TCCGATTAACGACGATTCCAGTTTGACAGATGAAGTGGCTATGGACTGTGAAATGGTTGG 341
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 319 TCCGGTTAACGACGATTCCAGTTTGACAGATGAAGTGGCTATGGACTGTGAAATGGTTGG 378
Query 342 TGTTAGTCAAGGAACCAAAAGTGCCCTTGGACGAGTTACCTTGGTAAATAAATGGGGAAA 401
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 379 TGTCAGTCAAGGAACCAAAAGTGCCCTTGGACGAGTTACCTTGGTAAATAAATGGGGAAA 438
Query 402 TGTTCTATATGATGAGTTTGTCCGTCCAGTGGAACGTGTTGTTGACTTCCGTACG-CATA 460
||||||||||||||||||||||||||||||||||| |||||||||||| ||||| | ||
Sbjct 439 TGTTCTATATGATGAGTTTGTCCGTCCAGTGGAACATGTTGTTGACTTTCGTACTTC-TA 497
Query 461 TTAGCGGGATTCGACCTCGAGATTTGAGAAAGGCCAAAGATTTCCGAGTTGCTCAGACCA 520
|||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 498 TTAGCGGGATTCGACCTCGAGATTTGAGAAAGGCCAAAGATTTCCGCGTTGCTCAAACCA 557
Query 521 AAGTAGCAGAGTTGATAAAGGGAAAGATTCTCGTGGGACACGCCTTGCACAATGATCTCA 580
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 558 AAGTAGCAGAGTTGATAAAGGGAAAGATTCTCGTGGGACACGCCTTGCATAATGATCTCA 617
Query 581 AGGCTTTGCTGCTAACTCACCCGAAAAAGGACATAAGGGACACAGCAGAGTATCAGCCCT 640
||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct 618 AGGCTTTGCTGCTAACTCACCCGAAAAAGGACATAAGGGACACAGGAGAATATCAGCCCT 677
Query 641 TTCTCAATAATCTCTCAAACAGGGACAAAACCAGAAAGTCTCTGAAACATCTCGCAGCTG 700
||||||| ||| |||||| |||||||||||||||||||||||| |||
Sbjct 678 TTCTCAA--------------GGG-CAAAACAAGAAAGTCTCTGAAACATCTCGCATCTG 722
Query 701 AAATTCTAGGGGCTGACATTCAAAATGGAGAGCACTGCCCTATTGATGATGCACGAGCTG 760
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 723 AAATTCTAGGGGCTGACATTCAAAATGGAGAGCACTGCCCTATTGATGATGCAAGAGCTG 782
Query 761 CTATGATGCTTTATCAGAAGAACAGAAAAGAGTGGGAGAAAAATGTGAAAGACCAGACAC 820
| ||||||||||| || ||||||||||||||||||||||||| |||||||||||||||||
Sbjct 783 CGATGATGCTTTACCAAAAGAACAGAAAAGAGTGGGAGAAAACTGTGAAAGACCAGACAC 842
Query 821 GGATGTGGCTGAAACAAAAGAAGCGTAAGCCTAAGAAGAAGG-TAAAAGAAGGGAAC--- 876
|||||||||||||||||||||||||||||||||||||||| | |||| | ||||||
Sbjct 843 GGATGTGGCTGAAACAAAAGAAGCGTAAGCCTAAGAAGAAAGCTAAAT-ATGGGAACAAC 901
Query 877 GCTTCGACCAATCACAATCCAGTTGTTTGA 906
||||| |||||| |||||||| ||||||||
Sbjct 902 GCTTCCACCAATGACAATCCAATTGTTTGA 931
Score = 265 bits (143), Expect = 7e-70
Identities = 154/159 (97%), Gaps = 2/159 (1%)
Strand=Plus/Plus
Query 1 ATGAGTTCTGATCTGAAGAGAAAGCAGCAGAAGAAGATTAA-TCCTAAACCTGTTCAATT 59
||||||||||||||||||||||||| | ||||||||| ||| ||||||||||||||||||
Sbjct 104 ATGAGTTCTGATCTGAAGAGAAAGCCGAAGAAGAAGA-TAACTCCTAAACCTGTTCAATT 162
Query 60 AAACCCTAATTGGTCACTCCTCCAACAAAAGCTGAAATCTGATTCTCATGGCAACACTCG 119
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 163 AAACCCTAATTGGTCACTCCTCCAACAAAAACTGAAATCTGATTCTCATGGCAACACTCG 222
Query 120 AAAATCTTCAAACCCAGAAAATCCCAGCTCCATATTAGG 158
|||||||||||||||||||||||||||||||||||||||
Sbjct 223 AAAATCTTCAAACCCAGAAAATCCCAGCTCCATATTAGG 261
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44256283507
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5