BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg318329
Length=816
Score E
Sequences producing significant alignments: (Bits) Value
AT3G15490.1 | Symbols: | Regulator of Vps4 activity in the MVB... 761 0.0
> AT3G15490.1 | Symbols: | Regulator of Vps4 activity in the MVB
pathway protein | chr3:5229124-5230646 FORWARD LENGTH=1297
Length=1297
Score = 761 bits (412), Expect = 0.0
Identities = 516/566 (91%), Gaps = 7/566 (1%)
Strand=Plus/Plus
Query 256 GCGAAGCAATTCTATGAAGATGAGAGAAGGTTATCGGCATACGATCAGGTCGAGCTCTTC 315
||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 734 GCGAAGCAATTCTATGAAGATGAGAGAAGGTTATCGGCATATGATCAGGTTGAGCTCTTC 793
Query 316 TGCACATCCATCTTGCAGAATATATCTTCTTTGAAACATGAAAGCGATGTTAATTTGTTA 375
|||||| ||||||||||||||||||||||||||||| |||||| | ||||| || |||||
Sbjct 794 TGCACAACCATCTTGCAGAATATATCTTCTTTGAAATATGAAAACAATGTTGATCTGTTA 853
Query 376 CTGGAAGAAACTAAAGAAGCAATGGCCGGAATGATATTTGCTGCATCAAGAATTGGCGAG 435
| ||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||
Sbjct 854 CCGGAAGAAACTAAAAAAGCAATGGCCGGAATTATATTTGCTGCATCAAGAATTGGCGAG 913
Query 436 CTTGAGGATCTTCAACACATAAGGAGCTTGTTCGTCCAAAGATTTGGGCTTCAGTTTGAC 495
||||||||||||||||||||||||||||| ||||| ||||||||||||||| |||||||
Sbjct 914 CTTGAGGATCTTCAACACATAAGGAGCTTCTTCGTTCAAAGATTTGGGCTTAAGTTTGAT 973
Query 496 AAAGACTGTGTAAATTTGCGCCAAGGAAACGTCGTGGGTTCTGAGATAGTCAAGATTCTA 555
||||| |||||| ||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 974 AAAGAGTGTGTAGATTTGCGCCAAGGAAACGTCGTGGGTTTTGAGATAGTCAAGATTCTA 1033
Query 556 GACAC-AAGTGTGCGGAAAGATGAAATTACACATATTGTAATGGAACTTTCTCAAAAGTA 614
|||| || | ||||| ||||||||||||||||||||||| |||||||||||| |||||
Sbjct 1034 AACACGAA-TATGCGGGGAGATGAAATTACACATATTGTAAGGGAACTTTCTCATAAGTA 1092
Query 615 CCAAACCAACATCGCTACTTCTGCGGATTCGATAAGTAAAGATTCAGCTTCAAGTGACGA 674
| ||||||||||| |||||||| ||||||| |||||| |||||| ||||||||||||||
Sbjct 1093 CAAAACCAACATCACTACTTCTACGGATTCAATAAGTGAAGATTTGGCTTCAAGTGACGA 1152
Query 675 TCTTGGCATTTCCGATCCTGATGTGATGAAGGTAGAGAAAATGAAAAGGG-T-TA-GGAG 731
||| |||||| ||||| |||||| ||||||||| |||||||||||||||| | | ||||
Sbjct 1153 TCTCGGCATTGCCGATTCTGATGCGATGAAGGTTGAGAAAATGAAAAGGGCTCTTCGGAG 1212
Query 732 AAAGGAAGTTGTGAAGGAGAATTCTAAGTTTATGCATCCAAATCTTGGAGAGTTTCAAGG 791
|||| ||||| |||||||||||||||||||| |||||||||||||| |||||| ||| ||
Sbjct 1213 AAAGAAAGTTATGAAGGAGAATTCTAAGTTTTTGCATCCAAATCTTAGAGAGTCTCAGGG 1272
Query 792 AAGAGATCGATCATTCATGA-GATAA 816
||||||||||||||||| || |||||
Sbjct 1273 AAGAGATCGATCATTCA-GAAGATAA 1297
Score = 106 bits (57), Expect = 4e-22
Identities = 85/98 (87%), Gaps = 3/98 (3%)
Strand=Plus/Plus
Query 1 ATGTGTGCCAAGAAAACAAAATCAAAGTTTGGGTGCTTTAGTAACGTCTTTGGTGATC-- 58
|||| |||||||||| || |||||||||||||||||||| |||| | ||||||| ||
Sbjct 414 ATGTTTGCCAAGAAACCAGAATCAAAGTTTGGGTGCTTTTTTAACATATTTGGTGTTCTT 473
Query 59 -GATCTCGTTCTTCAAGATGGCGAAAAGCTTCAAAGTG 95
| ||||||||||||||||||||||||||||| |||||
Sbjct 474 CGGTCTCGTTCTTCAAGATGGCGAAAAGCTTCGAAGTG 511
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39735210277
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5