BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg318393

Length=474
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G16175.1 | Symbols:  | Thioesterase superfamily protein | ch...   754    0.0  


> AT3G16175.1 | Symbols:  | Thioesterase superfamily protein | 
chr3:5480464-5481379 FORWARD LENGTH=678
Length=678

 Score =  754 bits (408),  Expect = 0.0
 Identities = 452/474 (95%), Gaps = 0/474 (0%)
 Strand=Plus/Plus

Query  1    ATGGTAGATCCAACGATCCATAACACGACGACGTATCTCGAAGAGATAGCAAAAGGAAAC  60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  34   ATGGTAGATCCAACGATCCATAACACGACGACGTATCTCGAAGAGATAGCAAAAGGAAAC  93

Query  61   GGGAAAACCGAGTTCGAGATTTTAATCTTGCAAGGTTTAGAACTCATTCATGTCGGGAAA  120
            ||| |||||||||||||||||||||||||| |||| ||||||||||| ||||||||||||
Sbjct  94   GGGCAAACCGAGTTCGAGATTTTAATCTTGAAAGGCTTAGAACTCATCCATGTCGGGAAA  153

Query  121  GGAACCTTACGATGTAGATTAGTCGTCACAGATCGTGTCGCGGGAGAAGATGGAAGTTGG  180
            || | |||||| |||| |||| | |||||||||| ||||| |||||||||||||||||||
Sbjct  154  GGGATCTTACGTTGTAAATTACTTGTCACAGATCATGTCGTGGGAGAAGATGGAAGTTGG  213

Query  181  AACGCCGGAGTGATTACGGCGGTGATGGACTCGATCGGAGCGTCAGCTGTGTACTCCGCC  240
            || || ||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct  214  AATGCGGGAGTGATTACGGCGGTGATGGACTCGATCGGAGCGTCAGCTGTGTACTCCTCC  273

Query  241  GGCGGAGGACTCCATATCTCTGTTGATCTCAACTCTTCGTTTTATTCAACGGCCAAGATT  300
            ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  274  GGCGGCGGACTCCATATCTCTGTTGATCTCAACTCTTCGTTTTATTCAACGGCCAAGATT  333

Query  301  CACGAAACGGTAGAGATAGAAGCAAGAGTGAATGGAAGCAATGGAGGATTAAAATCAGCT  360
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  334  CACGAAACGGTAGAGATAGAAGCAAGAGTGAATGGAAGCAATGGAGGATTAAAATCAGCT  393

Query  361  GTGATTGAGATTAGAAGAGAAACAAATGGAGAAATCATAGCCACAGGAAGATTGTGGATG  420
            ||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||
Sbjct  394  GTGATTGAGATTAGAAGAGAAACAAGTGGAGAAATTATAGCCACAGGAAGATTGTGGATG  453

Query  421  GCTCCACTTAGCCTCAAAGTCATGCACAATGTTTCTACTCTTAGTAAGCTTTGA  474
            |||||||||||| |||||| ||| || |||||||||||||||||||||||||||
Sbjct  454  GCTCCACTTAGCGTCAAAGCCATACAAAATGTTTCTACTCTTAGTAAGCTTTGA  507



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22555132003


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5