BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg318430
Length=1137
Score E
Sequences producing significant alignments: (Bits) Value
AT3G16590.1 | Symbols: | F-box and associated interaction doma... 1639 0.0
> AT3G16590.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr3:5649932-5651056 REVERSE LENGTH=1125
Length=1125
Score = 1639 bits (887), Expect = 0.0
Identities = 1051/1129 (93%), Gaps = 16/1129 (1%)
Strand=Plus/Plus
Query 1 ATGTCGACAAAGCTTCCATC-GGAGTTGGAGGATGAGATACTTTTTCGTGTTCCACCTCT 59
||| |||| ||||||||| | |||||||||||||||||||||||| ||||||||||||||
Sbjct 1 ATGCCGACGAAGCTTCCA-CTGGAGTTGGAGGATGAGATACTTTTGCGTGTTCCACCTCT 59
Query 60 ATCTCTCACTCGATTTCGAACCGTTTGCAAACGATGGAACACACTTTTCAACGATCAGAG 119
||||||||| || ||| |||| ||||||||||||||||||||||||||||||||||||||
Sbjct 60 ATCTCTCACACGCTTTAGAACAGTTTGCAAACGATGGAACACACTTTTCAACGATCAGAG 119
Query 120 ATTCATCAACAATCACTTGGCTTGCGTCCGTCCTCAATTCATCTTACGGACCGAGAAAGA 179
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 120 ATTCATCAACAATCACTTGGCTTGCGTCCGTCCTCAGTTCATATTACGGACCGAGAAAGA 179
Query 180 TTCCAAGATTTATTCAATAGGCATCAATCTCGATGACTCCTTAGAGGTGCGTGAGCTGAA 239
||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| ||
Sbjct 180 TTCCAAGATCTATTCAATAGGCATCAATATCGATGACTCCTTAGAGGTGCGTGAGCTAAA 239
Query 240 CCTAGAAACTCAAGGTCCTAAGAA-A--CTTAAGGTATATCGAAACCTCTTTTACTGCGA 296
||||||||||||||||||||| || | |||||||||||||||||||||||||| |||||
Sbjct 240 CCTAGAAACTCAAGGTCCTAATAAGAAGCTTAAGGTATATCGAAACCTCTTTTATTGCGA 299
Query 297 CGGGTTTTTGTTATGTCCTGCTTTGATTGACGAGGTTGCGGTCTGGAATCCATGGTTGAG 356
|| ||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||
Sbjct 300 TGGTTTTTTGTTATGTCCTGCTTTGCTTGACGAGGTTGCTGTCTGGAATCCATGGTTGAG 359
Query 357 ACAACAAACTAAATGGATAGAGCCTAAGAGGACTAGATTCAATTTATATGGACTAGGGTA 416
| |||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||
Sbjct 360 AAAACAAACTAAATGGATCGAGCCTAAGAGGAGTAGATTCAATTTATATGGACTAGGGTA 419
Query 417 TGATAATCGTAGACCGGAGAAGTGTTACAAGATCTTAGGGTTTAGCTACGGTTACTGTAG 476
||||||||||||||||||||||||||||||||||||||||||| | || |||||| ||||
Sbjct 420 TGATAATCGTAGACCGGAGAAGTGTTACAAGATCTTAGGGTTTGGTTATGGTTACAGTAG 479
Query 477 TGAAATAGACGGTAGTAACACCAAAATCAACCCAAGAGTTTCG--ATTTACGAGTTTGAA 534
||||||| |||||||| ||| || ||| ||||| ||||||||| |||| |||||||||
Sbjct 480 TGAAATAAACGGTAGTTACAACAGAATTAACCCGAGAGTTTCGGTATTT--GAGTTTGAA 537
Query 535 ACTAATATGTGGAAGGATCTTAAGTTTGGTTTACTTGATTGGCACTTAAGATCTCCCCGG 594
|||||| ||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 538 ACTAATGCGTGGAAGGATCTTAAGTTTGGTTTATTTGATTGGCACCTAAGATCTCCCCGG 597
Query 595 ACTGTTTTATCTTTGAATGGAACTTTGTATTGGATTGCTATAAGATGTGAGAGTGGTGGT 654
||||||||||||||||||||||||||||||||||||||| | || ||||| |||||||||
Sbjct 598 ACTGTTTTATCTTTGAATGGAACTTTGTATTGGATTGCTGTGAGGTGTGAAAGTGGTGGT 657
Query 655 GATTGTTTTATCCAAAGCTTTGACTTTTCGAGTGAGAGAT-TT-GAACCCTTTTGTCTCT 712
||| |||||||||||||||||||||||||||| | ||||| || || |||||||||||||
Sbjct 658 GATGGTTTTATCCAAAGCTTTGACTTTTCGAG-G-GAGATGTTCGAGCCCTTTTGTCTCT 715
Query 713 TGCCGTGTAAGAACGATCTTGGCGATACTCAAATCCTTGAGGTGTTTAGGGGAGATCGAC 772
|||| |||||||||||| ||||||||||||||||||||||||| |||||||||||||| |
Sbjct 716 TGCCATGTAAGAACGATTTTGGCGATACTCAAATCCTTGAGGTTTTTAGGGGAGATCGGC 775
Query 773 TTTCAGTGTTGGAACAATGCGTGACAACAAAGAAGATCAAGATTTGGGTGACTAAGAACA 832
| || ||||||||||||||| ||||||||| ||||||||||||||||||||||||||||
Sbjct 776 TATCTGTGTTGGAACAATGCCCGACAACAAATAAGATCAAGATTTGGGTGACTAAGAACA 835
Query 833 GGATTAGTGGAGATAGGAAGGAGCTTGTCTCGTGGAGACTGTTAATGACTGTGTCGATAC 892
||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 836 AGATTAGTGGAGATAGGAAGGAGCTTGTGTCGTGGAGACTGTTAATGACAGTGTCGATAC 895
Query 893 CAAACTTCCCGAGATTACAAGACCATATTTACTCTAATTCTCAGCCGAGTTACTTCATGG 952
|||||||||||||||||||||| | | || ||||||||||||||||||||||||||||||
Sbjct 896 CAAACTTCCCGAGATTACAAGATC-T-TT-ACTCTAATTCTCAGCCGAGTTACTTCATGG 952
Query 953 ATAACAATGATGACAAGAGGCTCATTGTGTGTACTTGTGATGAAATTGGAAAGCCTTGCA 1012
||||||||||||||||||||||||| ||||||||||||||||||| ||| ||||||||||
Sbjct 953 ATAACAATGATGACAAGAGGCTCATCGTGTGTACTTGTGATGAAAGTGGTAAGCCTTGCA 1012
Query 1013 TCTACATTGTGAAGGGAGATAGGTTCAAGAAGATTCAAATGGATTTTGAGGTTGATCCTT 1072
| |||||||||||||| ||||||||||||||||||||||||| |||||||||||| ||||
Sbjct 1013 TATACATTGTGAAGGGGGATAGGTTCAAGAAGATTCAAATGGGTTTTGAGGTTGAGCCTT 1072
Query 1073 GGCCTTTTCACCTTGTCTATGTTCCTAGTTTGGTTCCTATTCCTTTAGC 1121
|||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1073 GGCCTTTTCACCTTGTTTATGTTCCTAGTTTGGTTCCTATTCCTTTAGC 1121
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55772805495
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5