BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg318431
Length=1893
Score E
Sequences producing significant alignments: (Bits) Value
AT3G16600.1 | Symbols: | SNF2 domain-containing protein / heli... 2625 0.0
AT3G20010.1 | Symbols: | SNF2 domain-containing protein / heli... 261 2e-68
> AT3G16600.1 | Symbols: | SNF2 domain-containing protein / helicase
domain-containing protein / zinc finger protein-related
| chr3:5652839-5655670 REVERSE LENGTH=1917
Length=1917
Score = 2625 bits (1421), Expect = 0.0
Identities = 1721/1860 (93%), Gaps = 43/1860 (2%)
Strand=Plus/Plus
Query 1 ATGGACGATGCTATGGACATGAGTTCAGGTAGTGATGAAGAAGTACAAGAAGAGGAGACC 60
||||| ||| | |||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1 ATGGATGATACAATGGACATGAGTTCAGGTAGTGATGAAGAAGTACAAGAAGAGAAGACC 60
Query 61 ACCGTTAACGAGAGGGTCATCTATCAGGCTGCATTACAAGATCTGAAACAACCAAAGACC 120
|| |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 61 ACTGTTAACGAGAGGGTCATCTATCAGGCTGCATTACAAGATCTGAAGCAACCCAAGACC 120
Query 121 GAAAAGGATCTACCTCCTGGTGTTCTTACAGTTCCTCTTATGAGGCATCAGAAAATTGCA 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GAAAAGGATCTACCTCCTGGTGTTCTTACAGTTCCTCTTATGAGGCATCAGAAAATTGCA 180
Query 181 TTGGAA-TGGATGCGTAAGAAAGAAAAAAGAAGCAGGCATTGTTTGGGAGGGATATTAGC 239
|| ||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 181 TT-GAACTGGATGCGTAAGAAAGAAAAAAGAAGCAGGCACTGTTTGGGAGGGATATTAGC 239
Query 240 AGATGATCAGGGACTTGGTAAAACAATCTCTACCATCTCTCTTATTCTATTACAAAAGTT 299
|||||||||||||||||||||||| ||||| || ||||||||||| || |||||||||||
Sbjct 240 AGATGATCAGGGACTTGGTAAAACGATCTCGACGATCTCTCTTATCCTGTTACAAAAGTT 299
Query 300 GAAGTCACAATCAAAGCAGaaaaaacgaaaaagtcgaaaa-TTTGGTGGTACATTAATTG 358
|||||||||||||||||||| ||| |||||| ||| |||| | |||||||||||| ||||
Sbjct 300 GAAGTCACAATCAAAGCAGAGAAAGCGAAAAGGTC-AAAACTCTGGTGGTACATTGATTG 358
Query 359 TTTGTCCAGCAAGTGTTGTTAAGCAATGGGCAAGAGAAGTTAAAGAGAAGGTTTCTGATG 418
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 359 TTTGTCCAGCAAGTGTTGTAAAACAATGGGCAAGAGAAGTTAAAGAGAAGGTTTCTGATG 418
Query 419 AACACAAGCTCTCTGTTTTAGTCTACCATGGATCTCGCAGAACCAAAGATCCTAA-AGAA 477
||||||| ||||||||||||||| |||||||||||| ||||||||||||||| || ||||
Sbjct 419 AACACAAACTCTCTGTTTTAGTCCACCATGGATCTCACAGAACCAAAGATCC-AACAGAA 477
Query 478 TTAGCAAAACATGATGTCGTCGTGACAACTTACGCTATTGTTACAAATGAAGTTCCACAA 537
|||||| | ||||||| ||| ||||||||||||| ||||||||||||||||||||||||
Sbjct 478 ATAGCAATATATGATGTGGTCATGACAACTTACGCCATTGTTACAAATGAAGTTCCACAA 537
Query 538 AACCCTCTGCTGAATCTTTATGATAGTAGGAGTAACAAGAGAGGCAGAGAAAGCTTTGAA 597
|||||| ||||||||| |||||||||| | | |||||||||||||||| ||||
Sbjct 538 AACCCTATGCTGAATCGTTATGATAGT---A-T-----GAGAGGCAGAGAAAGCCTTGAC 588
Query 598 GGATCTAGTCTGATTCAGTCTCACGTTGGTGCACTAGGAAGAGTTAGGTGGTTGAGAGTA 657
||||| ||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 589 GGATCGAGTTTGATTCAGCCTCACGTTGGTGCACTAGGAAGAGTTAGGTGGTTGAGAGTA 648
Query 658 GTATTAGATGAAGCTCATACAATTAAAAACCATAGAACCTTAATTGCAAAAGCTTGTTTC 717
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 649 GTATTAGATGAAGCTCATACAATTAAAAACCATAGAACCCTAATTGCAAAAGCTTGTTTT 708
Query 718 AGCCTTAGAGCCAAAAGGAGATGGTGTTTGACTGGAACGCCGATACAGAACAAAGTAGAC 777
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 709 AGCCTTAGAGCCAAAAGGAGATGGTGTTTGACTGGAACGCCGATAAAGAACAAAGTAGAC 768
Query 778 GATCTTTATAGCTATTTCAGGTTTCTTAGATATCATCCATATGCCATGTGCAATTCATTT 837
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 769 GATCTTTATAGCTATTTCAGATTTCTTAGATATCATCCATATGCCATGTGCAATTCATTT 828
Query 838 CACGAAAGAATCAAGGCTCCAATT-ACTAAAA-GCCCTCTTTATGGTTACAAGAAGCTTC 895
||| |||||||||| ||||||||| | ||||| ||| |||| ||||||||||||||||||
Sbjct 829 CACCAAAGAATCAAAGCTCCAATTGA-TAAAAAGCC-TCTTCATGGTTACAAGAAGCTTC 886
Query 896 AAGCTATTCTAAGGGGTATAATGTTACGCCGCACCAAAGTAGAATGGTCTTTCTACAGGA 955
||||||||||||||||||||||||| ||||||||||||| | | ||||||||||||||||
Sbjct 887 AAGCTATTCTAAGGGGTATAATGTTGCGCCGCACCAAAG-A-A-TGGTCTTTCTACAGGA 943
Query 956 AGCTTGAATTGTATTCACGTTTGAAGTTCGAGGAATATGCTGCTGATGGGACTTTGCATG 1015
||||||||||| ||||||||| |||||| |||||||||||||||||||||||||||||||
Sbjct 944 AGCTTGAATTGAATTCACGTTGGAAGTTTGAGGAATATGCTGCTGATGGGACTTTGCATG 1003
Query 1016 AACACATGGCTTATCTTTTGCTGATGCTCTTGCGACTACGCCAAGCTTGTGACCATCCAC 1075
|||||||||||||||||||| ||||||| ||||||||||||||||||||| |||||||||
Sbjct 1004 AACACATGGCTTATCTTTTGGTGATGCTTTTGCGACTACGCCAAGCTTGTAACCATCCAC 1063
Query 1076 AACTTGTTAAAGGATATAGTCACTCAGATACTATT-GAAGAAATGTCAGATGAAGTTATA 1134
|||||||||| |||||||||||||||||||||| ||| |||||||||||| |||| |
Sbjct 1064 AACTTGTTAACGGATATAGTCACTCAGATACTACAAGAA-AAATGTCAGATGGAGTTCGA 1122
Query 1135 GTAGCACCTAGAGAGGATTTTATCATGTTCCTCGATCTCTTGAAATTATCCTCTACCATC 1194
||||| ||||||||| || | |||||||||||||||||||||||||||||||| |||| |
Sbjct 1123 GTAGCCCCTAGAGAGAATCTAATCATGTTCCTCGATCTCTTGAAATTATCCTCAACCACC 1182
Query 1195 TGCTCTGTTTGTAGTGATCCACCAAAAGACCCTGTTGTTACTTTATGTGGCCATGTGTTT 1254
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1183 TGCTCTGTTTGTAGTGATCCACCAAAAGACCCTGTTGTTACTTTGTGTGGCCATGTGTTT 1242
Query 1255 TGCTATGAGTGTGTGTCTGGAAACATTAATGGGGATGACAAAACGTGCCCTGCACTTAAT 1314
|| |||||||||||||||| ||||||||| |||||| |||| ||||||||||||||||||
Sbjct 1243 TGTTATGAGTGTGTGTCTGTAAACATTAACGGGGATAACAATACGTGCCCTGCACTTAAT 1302
Query 1315 TGC-AGCAACGAGCTTAAACATGATGTTGTTTTCACAGAATCTGCAGTTAGAAGCTGCAT 1373
||| | || | ||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 1303 TGCCA-CAGCCAGCTTAAACATGATGTTGTTTTCACTGAATCTGCAGTTAGAAGTTGCAT 1361
Query 1374 CAACGATTATGATGATCCTCAAGATAAAAATGCTTTAGTTATGCTTCAAGGCGACTTTAT 1433
||||||||||||||||||| |||||||||||||||||||| || ||||||||| |||||
Sbjct 1362 CAACGATTATGATGATCCTGAAGATAAAAATGCTTTAGTT--GCATCAAGGCGAGTTTAT 1419
Query 1434 TTCATCGAAAATCAAAGCTGTGATAGAGCTTCTTCAGTCGCTTGCACAGCAAGGCAGTCC 1493
||||||||||||| ||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 1420 TTCATCGAAAATCCGAGCTGTGATAGAGATTCTTCAGTCGCTTGCAGAGCAAGGCAGTCC 1479
Query 1494 AGACACTCCACCAATAAAGACAATAGTGTTCTCTCAGTGGACTG--ATGTGCAAGTGATG 1551
||||||||||||||||||||||||||| | | ||||||||| |||||| | || |
Sbjct 1480 AGACACTCCACCAATAAAGACAATAGTAT-C----AGTGGACTGGTATGTGCGA-TG-T- 1531
Query 1552 CTGATGTCTCTTAAAGCTGGAAACCTTGGATTGAATATGGTAGCTGCATGTCATGTTATT 1611
||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct 1532 -TGATGTCTCTTAAAGCTGGAAACCTTGGATTGAATATGGTAGCTGCAAGTCATGTCATT 1590
Query 1612 CTATTGGACCTTTGGTGGAATCCAACAACTGAAGATCAAGCTATTGATCGAGCTCATCGT 1671
||| ||||||| ||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 1591 CTACTGGACCTATGGTGGAATCCAACAACAGAGGATCAAGCTATTGATCGAGCTCATCGT 1650
Query 1672 ATCGGACAAACTCG-GACTGTTACAGTTACTCGTATTGCCATCAAAAATACCGTTGAGGA 1730
|||||||||||||| | ||||||| || ||||||||||||||||||||||||||||||||
Sbjct 1651 ATCGGACAAACTCGAG-CTGTTACGGTCACTCGTATTGCCATCAAAAATACCGTTGAGGA 1709
Query 1731 ACGAATTTTGACTCTTCAGGAACGTAAGAGGAACATTGTTGCATCTGCATTGGGTGAAAA 1790
|||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 1710 ACGAATTTTGACTCTTCATGAACGTAAAAGGAACATTGTTGCATCTGCATTGGGTGAAAA 1769
Query 1791 TCA-TGGTAAAAGTTCTGCGATTCAACTAACACTAGAAGATCTTGAATATCTATTTGTTT 1849
| ||| ||||||||||||||||||||||||||||||||||| |||||||| ||| |||
Sbjct 1770 AAACTGGCAAAAGTTCTGCGATTCAACTAACACTAGAAGATCTCGAATATCTGTTT-TTT 1828
> AT3G20010.1 | Symbols: | SNF2 domain-containing protein / helicase
domain-containing protein / zinc finger protein-related
| chr3:6971352-6976595 FORWARD LENGTH=3399
Length=3399
Score = 261 bits (141), Expect = 2e-68
Identities = 253/306 (83%), Gaps = 12/306 (4%)
Strand=Plus/Plus
Query 1546 GTGATGCTGATGTCTCTTAAAGCTGGAAACCTTGGATTGAATATGGTAGCTGCATGTCAT 1605
|||||||||||||| || ||||||||||||||||| |||||||||||||||||||||||
Sbjct 2836 GTGATGCTGATGTCGCTAAAAGCTGGAAACCTTGGGCTGAATATGGTAGCTGCATGTCAT 2895
Query 1606 GTTATTCTATTGGACCTTTGGTGGAATCCAACAACTGAAGATCAAGCTATTGATCGAGCT 1665
|||||||| ||||| ||||||||||||||||| || |||||||| || |||||||| ||
Sbjct 2896 GTTATTCTCTTGGATCTTTGGTGGAATCCAACTACCGAAGATCAGGCGATTGATCGTGCA 2955
Query 1666 CATCGTATCGGACAAACTCGGACTGTTACAGTTACTCGTATTGCCATCAAAA-ATACCGT 1724
|||||||| |||||||||||| | ||||| || ||||| || | || |||| | |||||
Sbjct 2956 CATCGTATTGGACAAACTCGGCCAGTTACTGTAACTCGCATAACTAT-AAAAGACACCGT 3014
Query 1725 TGAGGA-ACGAATTTTGACTCTTCAGGAAC-GTAAGAGGAACATTG-TTGCATCTGCATT 1781
|||||| | ||||||||| ||||||||| | || |||| || || ||||||| || ||
Sbjct 3015 TGAGGATA-GAATTTTGAAGCTTCAGGAAGAGAAA-AGGA-CAATGGTTGCATCGGCCTT 3071
Query 1782 GGGTGAA-AATCATGGTAAAAGTTCTGCGATTCAACTAACACTAGAAGATCTTGAA-TAT 1839
|||||| || |||||| ||| ||||||| | |||||| |||| ||||| || |||
Sbjct 3072 TGGTGAAGAA-CATGGTGGAAGCTCTGCGACACGTCTAACAGTAGACGATCTC-AAGTAT 3129
Query 1840 CTATTT 1845
|| |||
Sbjct 3130 CTGTTT 3135
Score = 172 bits (93), Expect = 9e-42
Identities = 188/233 (81%), Gaps = 10/233 (4%)
Strand=Plus/Plus
Query 82 TATCAGGCTGCATTACAAGATCTGAAACAACCAAAGACCGAAAAG-GATCTACCTCCTGG 140
|||||||||||| |||| | | |||| ||||| | ||| | |||| ||||||||||||||
Sbjct 766 TATCAGGCTGCACTACAGGTTTTGAATCAACCCATGACTG-AAAGTGATCTACCTCCTGG 824
Query 141 TGTTCTTACAGTTCCTCTTATGAGGCATCAGAAAATTGCATTGGAATGGATGCGTAAGAA 200
| |||| ||||||||||||||||||||||||||||||| |||| ||||||| | ||||
Sbjct 825 TACTCTTTCAGTTCCTCTTATGAGGCATCAGAAAATTGCGTTGGCATGGATGTTTCAGAA 884
Query 201 AGAAAAAAGAAGCAGGCAT-TGTTTGGGAGGGATATTAGCAGATGATCAGGGACTTGGTA 259
|||| ||| || || ||| ||||||||| ||||||||||||||||||||||||
Sbjct 885 GGAAACAAGTAGTTT-CAACTGTCCAGGAGGGATACTAGCAGATGATCAGGGACTTGGTA 943
Query 260 AAACAATCTCTACCATCT-CTCTTATTCTATTA-CAAAAG-TTGAAGTCACAA 309
| || |||| || || | ||||||| ||| | |||||| ||| |||||||
Sbjct 944 AGACGGTCTCGACGAT-TGCTCTTATCCTAA-AGCAAAAGATTGT-GTCACAA 993
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 93724417515
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5