BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg318431 Length=1893 Score E Sequences producing significant alignments: (Bits) Value AT3G16600.1 | Symbols: | SNF2 domain-containing protein / heli... 2625 0.0 AT3G20010.1 | Symbols: | SNF2 domain-containing protein / heli... 261 2e-68 > AT3G16600.1 | Symbols: | SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related | chr3:5652839-5655670 REVERSE LENGTH=1917 Length=1917 Score = 2625 bits (1421), Expect = 0.0 Identities = 1721/1860 (93%), Gaps = 43/1860 (2%) Strand=Plus/Plus Query 1 ATGGACGATGCTATGGACATGAGTTCAGGTAGTGATGAAGAAGTACAAGAAGAGGAGACC 60 ||||| ||| | |||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1 ATGGATGATACAATGGACATGAGTTCAGGTAGTGATGAAGAAGTACAAGAAGAGAAGACC 60 Query 61 ACCGTTAACGAGAGGGTCATCTATCAGGCTGCATTACAAGATCTGAAACAACCAAAGACC 120 || |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| Sbjct 61 ACTGTTAACGAGAGGGTCATCTATCAGGCTGCATTACAAGATCTGAAGCAACCCAAGACC 120 Query 121 GAAAAGGATCTACCTCCTGGTGTTCTTACAGTTCCTCTTATGAGGCATCAGAAAATTGCA 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 GAAAAGGATCTACCTCCTGGTGTTCTTACAGTTCCTCTTATGAGGCATCAGAAAATTGCA 180 Query 181 TTGGAA-TGGATGCGTAAGAAAGAAAAAAGAAGCAGGCATTGTTTGGGAGGGATATTAGC 239 || ||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 181 TT-GAACTGGATGCGTAAGAAAGAAAAAAGAAGCAGGCACTGTTTGGGAGGGATATTAGC 239 Query 240 AGATGATCAGGGACTTGGTAAAACAATCTCTACCATCTCTCTTATTCTATTACAAAAGTT 299 |||||||||||||||||||||||| ||||| || ||||||||||| || ||||||||||| Sbjct 240 AGATGATCAGGGACTTGGTAAAACGATCTCGACGATCTCTCTTATCCTGTTACAAAAGTT 299 Query 300 GAAGTCACAATCAAAGCAGaaaaaacgaaaaagtcgaaaa-TTTGGTGGTACATTAATTG 358 |||||||||||||||||||| ||| |||||| ||| |||| | |||||||||||| |||| Sbjct 300 GAAGTCACAATCAAAGCAGAGAAAGCGAAAAGGTC-AAAACTCTGGTGGTACATTGATTG 358 Query 359 TTTGTCCAGCAAGTGTTGTTAAGCAATGGGCAAGAGAAGTTAAAGAGAAGGTTTCTGATG 418 ||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| Sbjct 359 TTTGTCCAGCAAGTGTTGTAAAACAATGGGCAAGAGAAGTTAAAGAGAAGGTTTCTGATG 418 Query 419 AACACAAGCTCTCTGTTTTAGTCTACCATGGATCTCGCAGAACCAAAGATCCTAA-AGAA 477 ||||||| ||||||||||||||| |||||||||||| ||||||||||||||| || |||| Sbjct 419 AACACAAACTCTCTGTTTTAGTCCACCATGGATCTCACAGAACCAAAGATCC-AACAGAA 477 Query 478 TTAGCAAAACATGATGTCGTCGTGACAACTTACGCTATTGTTACAAATGAAGTTCCACAA 537 |||||| | ||||||| ||| ||||||||||||| |||||||||||||||||||||||| Sbjct 478 ATAGCAATATATGATGTGGTCATGACAACTTACGCCATTGTTACAAATGAAGTTCCACAA 537 Query 538 AACCCTCTGCTGAATCTTTATGATAGTAGGAGTAACAAGAGAGGCAGAGAAAGCTTTGAA 597 |||||| ||||||||| |||||||||| | | |||||||||||||||| |||| Sbjct 538 AACCCTATGCTGAATCGTTATGATAGT---A-T-----GAGAGGCAGAGAAAGCCTTGAC 588 Query 598 GGATCTAGTCTGATTCAGTCTCACGTTGGTGCACTAGGAAGAGTTAGGTGGTTGAGAGTA 657 ||||| ||| |||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 589 GGATCGAGTTTGATTCAGCCTCACGTTGGTGCACTAGGAAGAGTTAGGTGGTTGAGAGTA 648 Query 658 GTATTAGATGAAGCTCATACAATTAAAAACCATAGAACCTTAATTGCAAAAGCTTGTTTC 717 ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 649 GTATTAGATGAAGCTCATACAATTAAAAACCATAGAACCCTAATTGCAAAAGCTTGTTTT 708 Query 718 AGCCTTAGAGCCAAAAGGAGATGGTGTTTGACTGGAACGCCGATACAGAACAAAGTAGAC 777 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 709 AGCCTTAGAGCCAAAAGGAGATGGTGTTTGACTGGAACGCCGATAAAGAACAAAGTAGAC 768 Query 778 GATCTTTATAGCTATTTCAGGTTTCTTAGATATCATCCATATGCCATGTGCAATTCATTT 837 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 769 GATCTTTATAGCTATTTCAGATTTCTTAGATATCATCCATATGCCATGTGCAATTCATTT 828 Query 838 CACGAAAGAATCAAGGCTCCAATT-ACTAAAA-GCCCTCTTTATGGTTACAAGAAGCTTC 895 ||| |||||||||| ||||||||| | ||||| ||| |||| |||||||||||||||||| Sbjct 829 CACCAAAGAATCAAAGCTCCAATTGA-TAAAAAGCC-TCTTCATGGTTACAAGAAGCTTC 886 Query 896 AAGCTATTCTAAGGGGTATAATGTTACGCCGCACCAAAGTAGAATGGTCTTTCTACAGGA 955 ||||||||||||||||||||||||| ||||||||||||| | | |||||||||||||||| Sbjct 887 AAGCTATTCTAAGGGGTATAATGTTGCGCCGCACCAAAG-A-A-TGGTCTTTCTACAGGA 943 Query 956 AGCTTGAATTGTATTCACGTTTGAAGTTCGAGGAATATGCTGCTGATGGGACTTTGCATG 1015 ||||||||||| ||||||||| |||||| ||||||||||||||||||||||||||||||| Sbjct 944 AGCTTGAATTGAATTCACGTTGGAAGTTTGAGGAATATGCTGCTGATGGGACTTTGCATG 1003 Query 1016 AACACATGGCTTATCTTTTGCTGATGCTCTTGCGACTACGCCAAGCTTGTGACCATCCAC 1075 |||||||||||||||||||| ||||||| ||||||||||||||||||||| ||||||||| Sbjct 1004 AACACATGGCTTATCTTTTGGTGATGCTTTTGCGACTACGCCAAGCTTGTAACCATCCAC 1063 Query 1076 AACTTGTTAAAGGATATAGTCACTCAGATACTATT-GAAGAAATGTCAGATGAAGTTATA 1134 |||||||||| |||||||||||||||||||||| ||| |||||||||||| |||| | Sbjct 1064 AACTTGTTAACGGATATAGTCACTCAGATACTACAAGAA-AAATGTCAGATGGAGTTCGA 1122 Query 1135 GTAGCACCTAGAGAGGATTTTATCATGTTCCTCGATCTCTTGAAATTATCCTCTACCATC 1194 ||||| ||||||||| || | |||||||||||||||||||||||||||||||| |||| | Sbjct 1123 GTAGCCCCTAGAGAGAATCTAATCATGTTCCTCGATCTCTTGAAATTATCCTCAACCACC 1182 Query 1195 TGCTCTGTTTGTAGTGATCCACCAAAAGACCCTGTTGTTACTTTATGTGGCCATGTGTTT 1254 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 1183 TGCTCTGTTTGTAGTGATCCACCAAAAGACCCTGTTGTTACTTTGTGTGGCCATGTGTTT 1242 Query 1255 TGCTATGAGTGTGTGTCTGGAAACATTAATGGGGATGACAAAACGTGCCCTGCACTTAAT 1314 || |||||||||||||||| ||||||||| |||||| |||| |||||||||||||||||| Sbjct 1243 TGTTATGAGTGTGTGTCTGTAAACATTAACGGGGATAACAATACGTGCCCTGCACTTAAT 1302 Query 1315 TGC-AGCAACGAGCTTAAACATGATGTTGTTTTCACAGAATCTGCAGTTAGAAGCTGCAT 1373 ||| | || | ||||||||||||||||||||||||| ||||||||||||||||| ||||| Sbjct 1303 TGCCA-CAGCCAGCTTAAACATGATGTTGTTTTCACTGAATCTGCAGTTAGAAGTTGCAT 1361 Query 1374 CAACGATTATGATGATCCTCAAGATAAAAATGCTTTAGTTATGCTTCAAGGCGACTTTAT 1433 ||||||||||||||||||| |||||||||||||||||||| || ||||||||| ||||| Sbjct 1362 CAACGATTATGATGATCCTGAAGATAAAAATGCTTTAGTT--GCATCAAGGCGAGTTTAT 1419 Query 1434 TTCATCGAAAATCAAAGCTGTGATAGAGCTTCTTCAGTCGCTTGCACAGCAAGGCAGTCC 1493 ||||||||||||| ||||||||||||| ||||||||||||||||| ||||||||||||| Sbjct 1420 TTCATCGAAAATCCGAGCTGTGATAGAGATTCTTCAGTCGCTTGCAGAGCAAGGCAGTCC 1479 Query 1494 AGACACTCCACCAATAAAGACAATAGTGTTCTCTCAGTGGACTG--ATGTGCAAGTGATG 1551 ||||||||||||||||||||||||||| | | ||||||||| |||||| | || | Sbjct 1480 AGACACTCCACCAATAAAGACAATAGTAT-C----AGTGGACTGGTATGTGCGA-TG-T- 1531 Query 1552 CTGATGTCTCTTAAAGCTGGAAACCTTGGATTGAATATGGTAGCTGCATGTCATGTTATT 1611 ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| Sbjct 1532 -TGATGTCTCTTAAAGCTGGAAACCTTGGATTGAATATGGTAGCTGCAAGTCATGTCATT 1590 Query 1612 CTATTGGACCTTTGGTGGAATCCAACAACTGAAGATCAAGCTATTGATCGAGCTCATCGT 1671 ||| ||||||| ||||||||||||||||| || ||||||||||||||||||||||||||| Sbjct 1591 CTACTGGACCTATGGTGGAATCCAACAACAGAGGATCAAGCTATTGATCGAGCTCATCGT 1650 Query 1672 ATCGGACAAACTCG-GACTGTTACAGTTACTCGTATTGCCATCAAAAATACCGTTGAGGA 1730 |||||||||||||| | ||||||| || |||||||||||||||||||||||||||||||| Sbjct 1651 ATCGGACAAACTCGAG-CTGTTACGGTCACTCGTATTGCCATCAAAAATACCGTTGAGGA 1709 Query 1731 ACGAATTTTGACTCTTCAGGAACGTAAGAGGAACATTGTTGCATCTGCATTGGGTGAAAA 1790 |||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| Sbjct 1710 ACGAATTTTGACTCTTCATGAACGTAAAAGGAACATTGTTGCATCTGCATTGGGTGAAAA 1769 Query 1791 TCA-TGGTAAAAGTTCTGCGATTCAACTAACACTAGAAGATCTTGAATATCTATTTGTTT 1849 | ||| ||||||||||||||||||||||||||||||||||| |||||||| ||| ||| Sbjct 1770 AAACTGGCAAAAGTTCTGCGATTCAACTAACACTAGAAGATCTCGAATATCTGTTT-TTT 1828 > AT3G20010.1 | Symbols: | SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related | chr3:6971352-6976595 FORWARD LENGTH=3399 Length=3399 Score = 261 bits (141), Expect = 2e-68 Identities = 253/306 (83%), Gaps = 12/306 (4%) Strand=Plus/Plus Query 1546 GTGATGCTGATGTCTCTTAAAGCTGGAAACCTTGGATTGAATATGGTAGCTGCATGTCAT 1605 |||||||||||||| || ||||||||||||||||| ||||||||||||||||||||||| Sbjct 2836 GTGATGCTGATGTCGCTAAAAGCTGGAAACCTTGGGCTGAATATGGTAGCTGCATGTCAT 2895 Query 1606 GTTATTCTATTGGACCTTTGGTGGAATCCAACAACTGAAGATCAAGCTATTGATCGAGCT 1665 |||||||| ||||| ||||||||||||||||| || |||||||| || |||||||| || Sbjct 2896 GTTATTCTCTTGGATCTTTGGTGGAATCCAACTACCGAAGATCAGGCGATTGATCGTGCA 2955 Query 1666 CATCGTATCGGACAAACTCGGACTGTTACAGTTACTCGTATTGCCATCAAAA-ATACCGT 1724 |||||||| |||||||||||| | ||||| || ||||| || | || |||| | ||||| Sbjct 2956 CATCGTATTGGACAAACTCGGCCAGTTACTGTAACTCGCATAACTAT-AAAAGACACCGT 3014 Query 1725 TGAGGA-ACGAATTTTGACTCTTCAGGAAC-GTAAGAGGAACATTG-TTGCATCTGCATT 1781 |||||| | ||||||||| ||||||||| | || |||| || || ||||||| || || Sbjct 3015 TGAGGATA-GAATTTTGAAGCTTCAGGAAGAGAAA-AGGA-CAATGGTTGCATCGGCCTT 3071 Query 1782 GGGTGAA-AATCATGGTAAAAGTTCTGCGATTCAACTAACACTAGAAGATCTTGAA-TAT 1839 |||||| || |||||| ||| ||||||| | |||||| |||| ||||| || ||| Sbjct 3072 TGGTGAAGAA-CATGGTGGAAGCTCTGCGACACGTCTAACAGTAGACGATCTC-AAGTAT 3129 Query 1840 CTATTT 1845 || ||| Sbjct 3130 CTGTTT 3135 Score = 172 bits (93), Expect = 9e-42 Identities = 188/233 (81%), Gaps = 10/233 (4%) Strand=Plus/Plus Query 82 TATCAGGCTGCATTACAAGATCTGAAACAACCAAAGACCGAAAAG-GATCTACCTCCTGG 140 |||||||||||| |||| | | |||| ||||| | ||| | |||| |||||||||||||| Sbjct 766 TATCAGGCTGCACTACAGGTTTTGAATCAACCCATGACTG-AAAGTGATCTACCTCCTGG 824 Query 141 TGTTCTTACAGTTCCTCTTATGAGGCATCAGAAAATTGCATTGGAATGGATGCGTAAGAA 200 | |||| ||||||||||||||||||||||||||||||| |||| ||||||| | |||| Sbjct 825 TACTCTTTCAGTTCCTCTTATGAGGCATCAGAAAATTGCGTTGGCATGGATGTTTCAGAA 884 Query 201 AGAAAAAAGAAGCAGGCAT-TGTTTGGGAGGGATATTAGCAGATGATCAGGGACTTGGTA 259 |||| ||| || || ||| ||||||||| |||||||||||||||||||||||| Sbjct 885 GGAAACAAGTAGTTT-CAACTGTCCAGGAGGGATACTAGCAGATGATCAGGGACTTGGTA 943 Query 260 AAACAATCTCTACCATCT-CTCTTATTCTATTA-CAAAAG-TTGAAGTCACAA 309 | || |||| || || | ||||||| ||| | |||||| ||| ||||||| Sbjct 944 AGACGGTCTCGACGAT-TGCTCTTATCCTAA-AGCAAAAGATTGT-GTCACAA 993 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 93724417515 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5