BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg318437

Length=558
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G16660.1 | Symbols:  | Pollen Ole e 1 allergen and extensin ...   767    0.0  
  AT3G16670.1 | Symbols:  | Pollen Ole e 1 allergen and extensin ...   117    1e-25


> AT3G16660.1 | Symbols:  | Pollen Ole e 1 allergen and extensin 
family protein | chr3:5676829-5677921 FORWARD LENGTH=751
Length=751

 Score =  767 bits (415),  Expect = 0.0
 Identities = 513/558 (92%), Gaps = 15/558 (3%)
 Strand=Plus/Plus

Query  1    ATGGCAATGTTAAAGAACAAAAACATAACCTTCTCATTGGTCTTGTTGTGTCTCATTGTG  60
            ||||||||||||||||||||| |||| ||| |||||||| ||||| |||||||| |||||
Sbjct  76   ATGGCAATGTTAAAGAACAAACACATGACCGTCTCATTGATCTTGGTGTGTCTCGTTGTG  135

Query  61   GTGTCTCCAATGGCTGAGGCTCAGCTTGGACTtggtggtggtggtggtggtggtggtggt  120
            ||||||||||||||||||||||||||||| | |  ||||||| ||||||||  |  ||||
Sbjct  136  GTGTCTCCAATGGCTGAGGCTCAGCTTGGTC-T--TGGTGGTAGTGGTGGT-CT--TGGT  189

Query  121  ggtcttattgggggtcttggtggtcttgttggtggtcttggtggtcttgtcggtggtctt  180
            |||||||||||||||| |  | |  |||  || ||||| |||||||| || |||||||||
Sbjct  190  GGTCTTATTGGGGGTC-T--T-G--TTG--GG-GGTCTCGGTGGTCTGGTTGGTGGTCTT  240

Query  181  gttggtggtATTCTCAATCTCGTCAATATCAATGGGGTTGTCTTTTGCTCTCTCAATGGC  240
            || || ||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct  241  GTAGGGGGTATTCTCAATCTCGTCAATATCAATGGGGTTGTCTTTTGCTCTCTCAATGGT  300

Query  241  GCTCTCAATGGCACTTCCACTCCTGCTTTCGCTAATGCAGGAGTTCAGCTCCAGTGCGGA  300
            |||| || ||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct  301  GCTCCCAGTGGCACTTCCACTCCTGCTTTCGCTAATGCAGGAGTTGAGCTCCAGTGCGGA  360

Query  301  AGGCAAAACAGAGTCGTTTCAACAGCGACCACAAACGCTGCCGGATTATTCACGCTTCCT  360
            ||||||||||| |||||||||||||||||||| || ||||||||||||||| ||||||||
Sbjct  361  AGGCAAAACAGGGTCGTTTCAACAGCGACCACGAATGCTGCCGGATTATTCTCGCTTCCT  420

Query  361  ACAGACACAATTCAGATGTTACTTTCCACACTCCTCTCTGATTGTCGGGTCGTCGTCACG  420
            || ||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct  421  ACGGACTCAATTCAGATGTTACTTTCCACACTTCTCTCTGATTGTCGGGTCGTCGTCACG  480

Query  421  ACCCCTCTCTCCACCTGCAACGCCAACCTCCCTTCCGTTGGCAACCTCGTCTCACGGTTA  480
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  481  ACCCCTCTCTCCACCTGCAACGCCAACCTCCCTTCCGTTGGCAACCTCGTCTCACGGTTA  540

Query  481  GCCATGATCGGGAACAGCCTCACCGGCCTCCTCAACATCATCAGTATCATCCCTGCCGGC  540
            ||||||||||| || || ||||||||||||||||||||||||||||||||||||||||||
Sbjct  541  GCCATGATCGGCAATAGTCTCACCGGCCTCCTCAACATCATCAGTATCATCCCTGCCGGC  600

Query  541  TTTGGTCTCCTTACCTGA  558
            |||||||| |||| ||||
Sbjct  601  TTTGGTCTTCTTAACTGA  618


> AT3G16670.1 | Symbols:  | Pollen Ole e 1 allergen and extensin 
family protein | chr3:5681419-5682331 FORWARD LENGTH=766
Length=766

 Score =  117 bits (63),  Expect = 1e-25
 Identities = 75/81 (93%), Gaps = 0/81 (0%)
 Strand=Plus/Plus

Query  19   AAAAACATAACCTTCTCATTGGTCTTGTTGTGTCTCATTGTGGTGTCTCCAATGGCTGAG  78
            ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | 
Sbjct  97   AAACACATAACCTTCTCATTGGTCTTGTTGTGTCTCATTGTGGTGTCTCCAATGGCTAAC  156

Query  79   GCTCAGCTTGGACTtggtggt  99
            ||||||  ||| |||||||||
Sbjct  157  GCTCAGAGTGGTCTTGGTGGT  177



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26774800351


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5