BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg318446
Length=918
Score E
Sequences producing significant alignments: (Bits) Value
AT3G16820.1 | Symbols: | F-box and associated interaction doma... 449 2e-125
AT3G17320.1 | Symbols: | F-box and associated interaction doma... 119 5e-26
AT2G28280.1 | Symbols: | pseudogene, hypothetical protein | ch... 119 5e-26
AT5G36730.1 | Symbols: | F-box and associated interaction doma... 69.4 6e-11
AT5G36820.1 | Symbols: | F-box and associated interaction doma... 69.4 6e-11
AT5G28527.1 | Symbols: | pseudogene, hypothetical protein | ch... 58.4 1e-07
> AT3G16820.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr3:5728016-5729174 REVERSE LENGTH=942
Length=942
Score = 449 bits (243), Expect = 2e-125
Identities = 360/416 (87%), Gaps = 10/416 (2%)
Strand=Plus/Plus
Query 466 AGATTTGGACCGCGACTTCCTCTGCCTTTTGACAT-TTTTATAATCGATAATGTGAGTCT 524
|||||||||||||||||| |||||||||||||| | || || || || | |||||||||
Sbjct 526 AGATTTGGACCGCGACTTACTCTGCCTTTTGAC-TATTCTACAAAGGAGAGTGTGAGTCT 584
Query 525 CTCGAGTGTTAGAGAAGAGCAGCTTGTGGTGTTACATCACCAATGGATGA-AATTGAGGA 583
|| ||||| ||||||||||||||||||| ||||| |||||| ||| | | || ||| ||
Sbjct 585 CTTGAGTGCTAGAGAAGAGCAGCTTGTGCTGTTATATCACCCCTGGTTTACAA-TGATGA 643
Query 584 TGGAGATATGGGTTAGTAATAAGATTGAGC-CTAATGCAGTGTCGTGGAGAAAGTTGTTA 642
|||||||||||||||||||||||||||||| | ||||| ||||| |||| |||||| |||
Sbjct 644 TGGAGATATGGGTTAGTAATAAGATTGAGCTC-AATGCGGTGTCATGGATAAAGTTCTTA 702
Query 643 GAGGTTAATATGAGACCATTACCTCGAT-ATCGTTTTCGTCTTGACCATGGGAGTTTCTT 701
|||||||| |||| | |||| |||| || |||| ||| || || |||||| |||||||||
Sbjct 703 GAGGTTAACATGATAACATTCCCTC-ATTATCGGTTTAGTTTTCACCATGTGAGTTTCTT 761
Query 702 CATTGACGAGAAGAATAAGGTCGTTGTGGTTCTGGATAAAGACGAAGAGACG-GAAACCC 760
||||||| ||||||||||||| || |||||| ||||||||||| |||||||| | | |
Sbjct 762 CATTGACAAGAAGAATAAGGTTGTAGTGGTTTTGGATAAAGACAAAGAGACGCGTT-CTC 820
Query 761 GCAACTTAGTTTATTTCATTGGAGAGGATGGATATTTCAAAGAAGTGGAACTGGGAGAAT 820
||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct 821 GCAACTTAGGATATTTCATTGGAGATGATGGATATTTCAAAGAAGTGGAACTGGGAGGAT 880
Query 821 CTAGAGGCAAAAATGGTTCTCCATTTGTGAGCTCTTATGTTCCAAGTTCAGTGCAA 876
|||||| || |||||||| |||||||||| |||||||||||||||||||||||||
Sbjct 881 CTAGAGACAGAAATGGTTATCCATTTGTGTTCTCTTATGTTCCAAGTTCAGTGCAA 936
Score = 440 bits (238), Expect = 1e-122
Identities = 411/488 (84%), Gaps = 38/488 (8%)
Strand=Plus/Plus
Query 1 ATGGCTATGTCTA-ATCTTCCTAGGGATTTGGTAGAAGAGGTGCTCTCTAG-GCTTTCGG 58
||||| || || | |||||||||||||||||||||| |||||||||||||| | || |||
Sbjct 1 ATGGCGATTTC-AGATCTTCCTAGGGATTTGGTAGAGGAGGTGCTCTCTAGAG-TTCCGG 58
Query 59 TGACATCTAC-GAGAGCAGTGCGATCTACTTGCAAAAAATGGAACATTATATCCAAAGAC 117
|||||||| | |||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 59 TGACATCT-CTGAGAACAGTGCGATCTACTTGCAAAAAATGGAACATTATATCCAAAGAC 117
Query 118 GAGAGCTTTACAACGAAGCACGTTGCTCAAGCAAACGCAGCAGCAAGGGAAAGTGAGTTT 177
||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 118 GAGAGCTTTACAAAGAAGCACGTTGGTCAAGCAAACGCAGCAGCAAGGGAAAGTGAGTTT 177
Query 178 CAGGTGGTAATGATGATGGAATATAA-GCTTTATTTAATGAGCGTCAATCTCCATGGCAT 236
||||||||||| |||| |||||| || | ||||| |||||||||||||||||||||||||
Sbjct 178 CAGGTGGTAATAATGACGGAATACAAAG-TTTATCTAATGAGCGTCAATCTCCATGGCAT 236
Query 237 TGAAAACAATGTTGATCCATCTATAGAGGTTAAGGGTAAACTTATTAGCCTAAAC-AT-- 293
| |||||||||||||||||||||||||| |||| |||||||||| |||||| | ||
Sbjct 237 TCAAAACAATGTTGATCCATCTATAGAGTTTAAATGTAAACTTATCAGCCTAGATGATTC 296
Query 294 AGCT-GA-T---CAAAT--C-----GTTTATGAGATTGAAATTTACAACTTTAACTCTGA 341
|| | || | | | | | |||||||||| |||||||||||||||| |||||||
Sbjct 297 AGATCGAATAGTCGATTTTCACCCAGTTTATGAGACTGAAATTTACAACTTTCACTCTGA 356
Query 342 TTCATGGAAGGC----GCT--TT--AC----G--GGG-ATAGGCGCTTTTTTGTACATGG 386
|||||||||| | | || || | ||| ||| || | |||| ||| ||
Sbjct 357 TTCATGGAAGAATATTGTTGATTCCACTCCTGAAGGGGATATGCAATATTTTAAACAAGG 416
Query 387 CGTGTCTCTCAAGGGAAATACTTACTGGTTTGCTAGAGAGTATGTGAGGTATGAAGGTGT 446
||||||||| ||||||||||||||||||||||||||| ||||||||| |||||||| |
Sbjct 417 CGTGTCTCTTAAGGGAAATACTTACTGGTTTGCTAGAAAGTATGTGATCTATGAAGGAGG 476
Query 447 ACAAGAAG 454
||||||||
Sbjct 477 ACAAGAAG 484
> AT3G17320.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr3:5915427-5916656 REVERSE LENGTH=1230
Length=1230
Score = 119 bits (64), Expect = 5e-26
Identities = 138/173 (80%), Gaps = 8/173 (5%)
Strand=Plus/Plus
Query 468 ATTTGGACCGCGACTTCCTCTGCC-TTTTGACATT-TTTATAATCGATAATGTGAGTCTC 525
||||||| |||| || |||||||| ||| | | || | | | || |||| | | |||
Sbjct 819 ATTTGGATCGCGTCTGCCTCTGCCATTTCGGCCTTGTGT-TGAT-GATACCATAACTCTA 876
Query 526 TCGAGTGTTAGAGAAGAGCAGCTTGTGGTGTTACATCACCAAT-GGATGA-AATTGAGGA 583
|| ||||||||||||||| | |||| ||||||| |||| | || |||| | || | |||
Sbjct 877 TCTAGTGTTAGAGAAGAGAAACTTGCGGTGTTATATCAGCGATGGGAT-ATAA-CGTGGA 934
Query 584 TGGAGATATGGGTTAGTAATAAGATTGAGCCTAATGCAGTGTCGTGGAGAAAG 636
|| ||||||| ||||||||||||||||||||||||||||||||||||| |||
Sbjct 935 CGGGGATATGGATTAGTAATAAGATTGAGCCTAATGCAGTGTCGTGGAGCAAG 987
> AT2G28280.1 | Symbols: | pseudogene, hypothetical protein |
chr2:12054736-12056452 REVERSE LENGTH=1717
Length=1717
Score = 119 bits (64), Expect = 5e-26
Identities = 321/438 (73%), Gaps = 45/438 (10%)
Strand=Plus/Plus
Query 466 AGATTTGGACCGCGACTTCCTCTGCCTTT-TGA--CATTTTTATAATCGATAATGTGA-G 521
||||||| |||||| || ||||||||||| || | | ||| | |||| ||||| |
Sbjct 1142 AGATTTGAACCGCGTCTGCCTCTGCCTTTCCGAGCCGTATTT-GGA--GATACTGTGACG 1198
Query 522 TCTCT-CGAGTGTTAGAGAAGAGCAGCTTGTGGTGTTACATCACCAATGGATGAAAT-TG 579
|| | | |||||||||||||||||||||| |||| | ||||| || | || |
Sbjct 1199 -CT-TGCTAGTGTTAGAGAAGAGCAGCTTGCGGTGCTGTTTCACC---GG--G-CATCCG 1250
Query 580 AGGATGGAGATATGGGTTAGTAATAAGATTGAGCCTAATGCAGTGTCGTGGAGAAAGTTG 639
| | ||||||||| ||| ||||||||||||||||||||||||||||||||| || |||
Sbjct 1251 TCG-TCGAGATATGGATTACTAATAAGATTGAGCCTAATGCAGTGTCGTGGAGCAACTTG 1309
Query 640 TTAGA-G--GTTAATATGAGACCATTAC-CTCGATATCGTTTTCGTCTTGACCATGGGAG 695
||| | ||| |||||| |||| | | || | | | | |||| | || | | ||||
Sbjct 1310 TTATTTGCTGTTGATATGAAACCAGT-CGCTGGTTTTTGGTTTCCTAATGTCGGTAGGAG 1368
Query 696 TTTCTTCATTGACGAGAAGAATAAGGTCGTTGTGGTTCTGGATAAAGACGA-AG-AGACG 753
||||||| |||||||| |||| ||||||| || ||||| |||||||| || | ||||
Sbjct 1369 TTTCTTCGTTGACGAGGAGAAGAAGGTCGCGGTTGTTCTTGATAAAGA-GATAATAGACA 1427
Query 754 GAA----ACC--C--GCAA-CT-TAGT--TTATTTCATTGGAGAGGATGGATAT-TTCAA 800
|| ||| | || | || | ||| |||||||| | ||||| || || |
Sbjct 1428 -AATGTCACCTTCCCGCTCGCAATATTGCTTACATCATTGGAAATAATGGA-ATCTTGAG 1485
Query 801 -AGAAGTGGAACTGGGAGAATCTAGAGGCAAAAATGGTT-CTCCATTTGTGAGCTCTTAT 858
| ||||||| || || |||||||||| ||| | ||| | ||| ||||| ||||||||
Sbjct 1486 TA-AAGTGGATCTTGGCGAATCTAGAGACAAGTTTTGTTAC-CCACTTGTGTGCTCTTAT 1543
Query 859 GTTCCAAGTTCAGTGCAA 876
|||||||| |||||||||
Sbjct 1544 GTTCCAAGCTCAGTGCAA 1561
> AT5G36730.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr5:14436317-14437549 FORWARD LENGTH=1233
Length=1233
Score = 69.4 bits (37), Expect = 6e-11
Identities = 42/44 (95%), Gaps = 1/44 (2%)
Strand=Plus/Plus
Query 388 GTGTCTCTCAAGGGAAATACTTACTGGTTTGCTAGAGAGTATGT 431
||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 631 GTGTCTCTCAAGGGAAATACTTACTGGTTTGCTCGAGAG-ATGT 673
> AT5G36820.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr5:14495617-14496849 FORWARD LENGTH=1233
Length=1233
Score = 69.4 bits (37), Expect = 6e-11
Identities = 42/44 (95%), Gaps = 1/44 (2%)
Strand=Plus/Plus
Query 388 GTGTCTCTCAAGGGAAATACTTACTGGTTTGCTAGAGAGTATGT 431
||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 631 GTGTCTCTCAAGGGAAATACTTACTGGTTTGCTCGAGAG-ATGT 673
> AT5G28527.1 | Symbols: | pseudogene, hypothetical protein |
chr5:10513366-10514577 FORWARD LENGTH=1212
Length=1212
Score = 58.4 bits (31), Expect = 1e-07
Identities = 39/43 (91%), Gaps = 0/43 (0%)
Strand=Plus/Plus
Query 384 TGGCGTGTCTCTCAAGGGAAATACTTACTGGTTTGCTAGAGAG 426
||| || |||||||||||||||||||||||||||| || ||||
Sbjct 667 TGGAGTCTCTCTCAAGGGAAATACTTACTGGTTTGTTAAAGAG 709
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44859093271
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5