BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg318448
Length=2496
Score E
Sequences producing significant alignments: (Bits) Value
AT3G16840.1 | Symbols: | P-loop containing nucleoside triphosp... 3542 0.0
> AT3G16840.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr3:5737886-5743144
REVERSE LENGTH=2717
Length=2717
Score = 3542 bits (1918), Expect = 0.0
Identities = 2260/2427 (93%), Gaps = 16/2427 (1%)
Strand=Plus/Plus
Query 1 ATGGTTGCAGGCGGCAAGGAATCTTCCTTGATGATGAAGAAGAACAAGAGAAGCCATAAG 60
|||||| |||||| || |||||||||||||||| ||||| |||||||||||||||||||
Sbjct 103 ATGGTTACAGGCGATAAAGAATCTTCCTTGATGAAGAAGAGGAACAAGAGAAGCCATAAG 162
Query 61 AGAAAGCGTGAGGAGGATTTCGAACGTATAGATTCACTTCCGTGGAGCTCTTCAATACCT 120
|||||||| |||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 163 AGAAAGCGAGAGGAGGATTTCGAACGTATAGATTCACTTCCTTGGAGCTCTTCTATACCC 222
Query 121 ATCGGAGAAGACGACGAAGGCGAAACCTTCTCCACTCTATTTTCAGGCTCAGGCCAGCTC 180
|| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 223 ATTGGAGAAGACGACGAAGGCGAATCCTTCTCCACTCTATTTTCAGGCTCAGGCCAGCTC 282
Query 181 GACGGAGGTTTTCTTTCACTTGAGGAGATTGATGAAGCTGATTACCATCTAGCTCTTCCT 240
|||||||||||||| |||||||||||||||||||||||||||||||||||| |||| |||
Sbjct 283 GACGGAGGTTTTCTATCACTTGAGGAGATTGATGAAGCTGATTACCATCTAACTCTCCCT 342
Query 241 ACGGTTGAAAATGGAATAACAGAGAGAAAACAAGCTCAAGAAGACGATGATGATACCAAC 300
|| |||||| || ||||||||||||||||||| ||| |||||| |||||||||||||||
Sbjct 343 ACCATTGAAAGTGAAATAACAGAGAGAAAACAATCTCCAGAAGATGATGATGATACCAAC 402
Query 301 GAGACTGTTGATGAGATAATTCAAGGCGAAGGAGAAGAAGAAGATGGAGAA-GAA---AT 356
||||| || |||||||| ||| |||| |||| || ||||||||||||||| ||| ||
Sbjct 403 GAGACAGTGGATGAGATGATTGAAGGAGAAGAAGCTGAAGAAGATGGAGAAGGAAGGGAT 462
Query 357 G--GA--A-GACGAGGATGACTCTGAGAGTCGtaagataagagagaagaaaactaagaag 411
| || | ||||| |||||| |||| |||||||| || |||||||||| |||||| |
Sbjct 463 GATGAGGATGACGAAGATGACGAGGAGACTCGTAAGAAAAAAGAGAAGAAAGCTAAGAGG 522
Query 412 aataaggagaagaaaaaggagaagaagaagaagaaacagaagaagaTTAAGGAGGCTGAA 471
||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||| | |
Sbjct 523 AATAAGGAGAAGAAAAAAGAGAAGAAGAAGAAGAAGCAGAAGAAGATTAATGAGGCCGCA 582
Query 472 AAGGATCAGGACACTTCTGATGCAGTTAGCTGTGATGAAGATTACAAAGTAGAGGAGCAA 531
||| |||||||| |||| ||| ||||||||||||| |||| ||| |||||||||||||
Sbjct 583 AAGAATCAGGACGCTTC---TGCTGTTAGCTGTGATGGAGATGACACAGTAGAGGAGCAA 639
Query 532 GTTGAGGGAGAAGAGATTCCTCCGGAATTTAGTGCATGGAGTTTGATGAGACTCCATCCA 591
||||||| ||||||||||||||| ||||||||||||||||||| ||||||||||||||||
Sbjct 640 GTTGAGGAAGAAGAGATTCCTCCAGAATTTAGTGCATGGAGTTCGATGAGACTCCATCCA 699
Query 592 CTACTCATGAAGTCAATATACCACCTTGGA-TTCAAGCAGCCGACAGAAATTCAGAAGGC 650
|||||||||||||| ||||||| || | || |||||| |||| ||| |||| ||||||||
Sbjct 700 CTACTCATGAAGTCCATATACCGCC-TCGATTTCAAGGAGCCAACAAAAATCCAGAAGGC 758
Query 651 TTGTTTTTCCATTGCAGCATATCAGGGAAAGGATGTTATTGGTGCTGCGGAGACAGGATC 710
||||||| | ||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 759 TTGTTTTAACGTTGCAGCATATCAGGGAAAGGATGTTATTGGTGCTGCAGAGACAGGATC 818
Query 711 TGGAAAGACTCTTGCTTTTGGGTTGCCCATACTGCAACGCCTCTTAGACGAACGGGAAAA 770
||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 819 TGGAAAGACACTTGCTTTTGGGTTGCCCATACTGCAACGCCTCTTAGACGAGCGGGAAAA 878
Query 771 GGTTGGTAAATTGTATGCATTGAAGGGAGAAAAAGCACAGAAATATGCTGCAGATGGCTA 830
||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||
Sbjct 879 GGTTGGTAAATTGTATGCATTAAAGGGAGAAGAAGCACAGAAATATGCTGCAGATGGCTA 938
Query 831 TTTACGAGCTCTAATCATCACTCCAACTAGGGAACTTGCTCTTCAGGTGACGGATCATCT 890
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 939 TTTACGAGCTCTAATCATCACTCCAACTAGGGAACTTGCTCTTCAGGTGACGGAGCATCT 998
Query 891 TAAGAATGCTGCCAAGAATCTCAACGTCAAGGTCGTTCCTATTGTTGGTGGGATGTCATC 950
| ||||||||||||||||||| | |||||||||||||||||||||||||||||||| ||
Sbjct 999 TGAGAATGCTGCCAAGAATCTTAGCGTCAAGGTCGTTCCTATTGTTGGTGGGATGTTTTC 1058
Query 951 AGCGAAGCAGGAAAGACTTTTAAAAGGGAAACCTGAAATAGTTGTTGGAACTCCAGGAAG 1010
|| |||||||||||||| |||||||| |||||||||||||||||||| ||||||||||||
Sbjct 1059 AGAGAAGCAGGAAAGACGTTTAAAAGAGAAACCTGAAATAGTTGTTGCAACTCCAGGAAG 1118
Query 1011 GTTGTGGGAACTTATGTCCGCTGGAGAAAAGCATCTTGTAGAGCTGCATTCCTTATCGTT 1070
||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1119 GTTATGGGAACTTATGTCCGCTGGAGAAAAGCATCTTGTAGAGCTGCATTCCTTGTCGTT 1178
Query 1071 CTTTGTGTTGGACGAGGCTGATCGCATGGTTGAAAGTGGTCATTTCAGGGAGCTGCAGTC 1130
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1179 CTTTGTGTTGGACGAGGCTGATCGCATGGTTGAAAGAGGTCATTTCAGGGAGCTGCAGTC 1238
Query 1131 TATAATTGACTTGCTTCCAGTGACAGATAGACCAAATGAAGGGAAAATGCAAACTGTGCA 1190
|||| | |||||||||||||||||||||| ||||||||||||||||| |||||||||| |
Sbjct 1239 TATACTCGACTTGCTTCCAGTGACAGATAAACCAAATGAAGGGAAAACGCAAACTGTGAA 1298
Query 1191 GAGTAGTGACACAGTTTCCAATGCCCCGAAGAAGAAAAGACAAACTTTTGTTTTCTCAGC 1250
||||| ||||||||||| || | ||||||||||||||||||||||||||||||||||||
Sbjct 1299 GAGTAATGACACAGTTTTAAACGTCCCGAAGAAGAAAAGACAAACTTTTGTTTTCTCAGC 1358
Query 1251 TACCATAGCGCTGTCTTCGGATTTCCGTAAAAAGCTAAAGCGTGGCTCCTCGAAGTCAAA 1310
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1359 CACCATAGCGCTGTCTTCGGATTTCCGTAAAAAGCTAAAGCGTGGCTCCTCAAAGTCAAA 1418
Query 1311 GCAATCATCATCTGGTGAAGTGAATTCTATTGAGGTTTTATCTGAACGAGCTGGAATGAG 1370
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1419 GCAATCATCATCTGGTGAAGTGAATTCTATTGAGGTTTTATCTGAACGAGCTGGAATGAG 1478
Query 1371 AGATAGTGTTGCCATCATTGATCTGACAACTGCATCTATTTTGGCACCAAAGATTGAAGA 1430
||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1479 AGATAATGTTGCCATCATTGATCTGACAACTACATCTATTTTGGCACCAAAGATTGAAGA 1538
Query 1431 ATCTTTTATTAAGTGCGAAGAGGAGGAAAAAGATGCTTACTTGTATTATATTTTGAGCGT 1490
|||||||||||||||||||||| |||||||||| || |||||||||||||||||||||||
Sbjct 1539 ATCTTTTATTAAGTGCGAAGAGAAGGAAAAAGACGCATACTTGTATTATATTTTGAGCGT 1598
Query 1491 CCATGGACAAGGGCGGACAATTGTTTTCTGTACATCAGTGGCAGCTTTGCGGCATATCTG 1550
|||||||||||||||||||||||||||||| ||||||||| | | ||||||||||||||
Sbjct 1599 CCATGGACAAGGGCGGACAATTGTTTTCTGCACATCAGTGACTGATTTGCGGCATATCTC 1658
Query 1551 TGCGCTTTTAAAGATTCTTGGACTCGATGTTTGCAAACTCTACTCAGATATGAAGCAGCG 1610
|| ||||||||||||||||||||| |||||||||| ||||| |||||| |||||||||||
Sbjct 1659 TGGGCTTTTAAAGATTCTTGGACTTGATGTTTGCACACTCTTCTCAGAAATGAAGCAGCG 1718
Query 1611 AGCTCGGTTGAAGGCAATTGACCGTTTCCGTGCAAGCGAAAATAGCATACTCATAGCAAC 1670
||||||||||||| |||| |||||||||||||| ||||||||| | ||||||||||||||
Sbjct 1719 AGCTCGGTTGAAGTCAATCGACCGTTTCCGTGCGAGCGAAAATGGAATACTCATAGCAAC 1778
Query 1671 AGATGTTGCAGCAAGGGGTATTGATATTAAGAATGTCCGAACTATTATTCACTACCAACT 1730
|||| ||| |||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1779 AGATCTTGTAGCAAGGGGTATTGATATTAAGAATGTCCGAACTATTATTCACTACAAACT 1838
Query 1731 TCCACATTCGGCAGAAGTATATGTACATAGAAGTGGGAGGACTGCTAGAGCATTCGCAGA 1790
|||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||
Sbjct 1839 TCCACATTCGGCAGAAGTGTATGTACATAGATGTGGGAGGACTGCTAGAGCATTCGCAGA 1898
Query 1791 TGGATGCAGTATAGCTTTGATTGCGCCAAGTGATTCGTCCAAGTTTTACACGTTATGCAA 1850
||||||||||||||||||||||| ||||| ||| |||||||||||||||||||||||||
Sbjct 1899 TGGATGCAGTATAGCTTTGATTGAGCCAAATGAGACGTCCAAGTTTTACACGTTATGCAA 1958
Query 1851 GTCATTCTCTAAGGAAACCGTAAAGATATTCCCTTTGGATAGCTCTTATATGCCAGCTGT 1910
||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1959 GTCATTCTCTATGGAAAGCGTAAAGATATTCCCTTTGGATAACTCTTATATGCCAGCTGT 2018
Query 1911 GAGGAAGCGATTATCTCTAGCACGTCAAATAGACCAGATTGAGCGGAAAGGCTCGCGGGA 1970
|||||||||||||| |||||||||||||||| | |||||||||||||||||||||||||
Sbjct 2019 GAGGAAGCGATTATATCTAGCACGTCAAATATATGAGATTGAGCGGAAAGGCTCGCGGGA 2078
Query 1971 GAAAGCAGACAGGACCTGGCTTGAAAAGCATGCTGAATCGATGGAACTCGAATTGGACGA 2030
||| |||||||||||||||||| |||| ||||||||||| ||||||||||||||||||||
Sbjct 2079 GAATGCAGACAGGACCTGGCTTAAAAAACATGCTGAATCAATGGAACTCGAATTGGACGA 2138
Query 2031 TGACGAAAGTGAAGAGGAAAGAGTGGACAATGTCAGGCAGAGAAAAGCGACCTCAGCACA 2090
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2139 TGAAGAAAGTGAAGAGGAAAGAGTGGACAATGTCAGGCAGAGAAAAGCGACCTCAGCACG 2198
Query 2091 ACTTAATAAGCTGCAGGAGGAACTTAGCTCGCTCTTATCACGTCCGATGCAGCCCAAGAA 2150
||||||||||||| |||||||||||||| |||||||||||| ||||||||||||||||||
Sbjct 2199 ACTTAATAAGCTGAAGGAGGAACTTAGCACGCTCTTATCACATCCGATGCAGCCCAAGAA 2258
Query 2151 ATTTTCAGGCCGTTACTTTGCTGGGGCTGGTGTGTCGACTCTTATGCAGAATCAGTTTAC 2210
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 2259 ATTTTCAGGCCGTTACTTTGCTGGGGTTGGTGTGTCGACTCTTATGCAGAATCAGTTTGT 2318
Query 2211 AGAGTTAACgaaacaaaaacaa-ctacaaatgcaaactggtggaaagaaaaagagaagaa 2269
|||||||| ||| ||||||||| | ||||||||||| ||||||| | | |||||||||||
Sbjct 2319 AGAGTTAAAGAAGCAAAAACAAGC-ACAAATGCAAATTGGTGGAGATATAAAGAGAAGAA 2377
Query 2270 aacTTGTTGTCATTAACCAGAACTGCATCGAACCTCTTCAAGCCCTTCGTGCTGGTGGTA 2329
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2378 AACTTGTTGTCATTAACCAGAACTGCATCGAACCTCTTCAAGCCCTTCGTGCTGGTGGTA 2437
Query 2330 ACGAGATGATGAAAATGAAAGGTCAGAGTGCAGACAAGAGGCGCGATATAGCGAGCTTGA 2389
|||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 2438 ACGAGATGCTGAAAATGAAAGGTCAGAGTGCAGAGAAGAGGCGCGATATAGCGAGCTTGA 2497
Query 2390 GGAAGAAAAGAAAGGAAGAGAAGATAG 2416
|||||||||||||||||||||||||
Sbjct 2498 AAAAGAAAAGAAAGGAAGAGAAGATAG 2524
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 123862182267
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5