BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg318449
Length=1359
Score E
Sequences producing significant alignments: (Bits) Value
AT3G16850.1 | Symbols: | Pectin lyase-like superfamily protein... 2036 0.0
> AT3G16850.1 | Symbols: | Pectin lyase-like superfamily protein
| chr3:5748570-5751297 FORWARD LENGTH=1806
Length=1806
Score = 2036 bits (1102), Expect = 0.0
Identities = 1275/1359 (94%), Gaps = 9/1359 (1%)
Strand=Plus/Plus
Query 7 GTGGCATTGGTCTGGCTACTGGCATTCACTATTCTACTGATCAGAGGGGAAGGCAATAAT 66
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 135 GTGGCATTGGTCTGGCTACTGGCATTCACTATTCTACTGATCAGTGGGGAAGGCAATAAT 194
Query 67 GCCATCTGCAAGGAG-ATTTTCAAGTTAGACCCTAGACCTCATAGTGTTTCGATCCTCGA 125
||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 195 GCCATCTGCAAGGAGAATTTT-AAGTTAGACCCTAGACCTCATAGTGTTTCGATCCTCGA 253
Query 126 GTTTGGAGCGGTTGGAGATGGGAAGACGCTCAACACTCTTGCTTTTCAGAACGCCATTTT 185
||||||||||||||| ||||||||||||||||||||| ||||||| |||||||| ||||
Sbjct 254 GTTTGGAGCGGTTGGTGATGGGAAGACGCTCAACACTATTGCTTTCCAGAACGCTGTTTT 313
Query 186 CTATCTCAAGTCCTTTGCGGATAAAGGCGGTGCTCAGCTTTATGTTCCACCAGGGAAATG 245
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 314 CTATCTCAAGTCTTTTGCGGATAAAGGCGGTGCTCAGCTTTATGTTCCACCAGGGAAATG 373
Query 246 GCTCACAGGAAGCTTCAATCTCACGAGCCATCTCACTCTCTTCTTGGAGAAAGGAGCAAC 305
|||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 374 GCTCACCGGAAGCTTCAATCTCACAAGCCATCTCACTCTCTTCTTGGAGAAAGGAGCAAC 433
Query 306 AATTCTTGCATCACCGGATCCGTCGCATTGGGACATTGTCAGCCCTCTACCGTCCTATGG 365
|||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||
Sbjct 434 AATTCTTGCATCACCGGATCCGTCGCATTGGGACGTTGTCAGTCCTCTACCGTCCTATGG 493
Query 366 TCGCGGAATTGAACTTCCTGGAAAGCGGTACAGAAGTTTGATCAATGGAGACAATCTACT 425
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 494 TCGCGGAATTGAACTTCCTGGAAAGCGGTACAGAAGTTTGATCAATGGAGACAATCTAAT 553
Query 426 AGACGTAGTCATCACCGGCGAAAATGGGACATTTGACGGTCAGGGTGCGGCATGGTGGGA 485
|||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 554 AGACGTAGTCATCACCGGTGAAAATGGGACATTTGACGGTCAAGGTGCGGCATGGTGGGA 613
Query 486 GTGGCTTGAGACGGGGTCCTTGAACTATAGTCGACCTCATATTATCGAATTCGTCTCATC 545
|||||||||| | ||||||||||||||||| ||||||||||| |||||||||||||| ||
Sbjct 614 GTGGCTTGAGTCCGGGTCCTTGAACTATAGCCGACCTCATATCATCGAATTCGTCTCCTC 673
Query 546 CAAGCACATCCTCATATCAAATCTAACCTTCTTAAACGCACCCTCAATCAACATTCACCC 605
|| |||||||||||||| |||||||||||||||||||| ||| ||||||||||||||||
Sbjct 674 TAAACACATCCTCATATCGAATCTAACCTTCTTAAACGCGCCCGCAATCAACATTCACCC 733
Query 606 TGTTTATTGCAGTCAAATTCATATCCGCAAAGTTTTGATCGAAACATCCGTTGATTCTCC 665
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 734 TGTTTATTGCAGTCAGATTCATATCCGCAAAGTTTTGATCGAAACATCCGTTGATTCTCC 793
Query 666 TTATGTTCTTGGAGTTGCCCCAGATTCTTCCGACAATGTTTGTATTGAGGACTCAACAAT 725
| |||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 794 CCACGTTCTTGGAGTTGCCCCAGATTCTTCGGACAATGTTTGTATCGAGGACTCAACAAT 853
Query 726 TAATGTTGGCCATGACGCGGTCTCTCTCAAGAGTGGTTGGGACCAATACGGCATACACTA 785
|| |||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 854 CAACGTTGGCCACGACGCGGTTTCTCTCAAGAGTGGTTGGGACCAATACGGTATACACTA 913
Query 786 CGGCCGTCCAACCACCGGTGTTCATATACGGAATCTCAGCTTAAAGTCTCCCACAGGTGC 845
||||||||||||||||| ||||||||| ||||||||||| |||||||||||||| |||||
Sbjct 914 CGGCCGTCCAACCACCGCTGTTCATATTCGGAATCTCAGATTAAAGTCTCCCACCGGTGC 973
Query 846 CGGAATCTCCTTCGGTAGCGAGATGTCAGGCGGAATCTCGGACGTGACCGTAGAGAGTCT 905
|||||||||||||| |||||||||||||||||| ||||||| |||||||| ||| ||||
Sbjct 974 TGGAATCTCCTTCGGGAGCGAGATGTCAGGCGGAGTCTCGGATGTGACCGTTGAGCGTCT 1033
Query 906 TAACATACAGAGCTCACACGTAGGCGTAGCCTTCAGAACCACCAGAGGCAGAGGAGGGTA 965
||||||||| ||||||| | |||| |||||||||||||||||||||||||||||||| ||
Sbjct 1034 TAACATACACAGCTCACTCATAGGTGTAGCCTTCAGAACCACCAGAGGCAGAGGAGGATA 1093
Query 966 CATCCGTAATATCACAATCTCCGACGTCGATCTCACCAGCGTTGACACAGCCATCGTCGT 1025
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |
Sbjct 1094 CATCCGTAATATCACAATCTCCGACGTCGATCTCACAAGCGTTGACACAGCCATAGTAGC 1153
Query 1026 CAACGGACACACCGGATCGCATCCAGATGATAAATTCGACCGGGACGCACTCCCAGTCGT 1085
||||||||||||||| || || || |||||||||||||||||||||||||||||||||||
Sbjct 1154 CAACGGACACACCGGGTCACACCCGGATGATAAATTCGACCGGGACGCACTCCCAGTCGT 1213
Query 1086 GACACACATCGTCCTACGGAATTTCACCGGAGTGGATATAGGATTGGCCGGGAATCTCAC 1145
||||||||| || | ||||||||||||||||| ||||||||| | ||||||||||||||
Sbjct 1214 GACACACATTGTTATGCGGAATTTCACCGGAGTTGATATAGGAGTAGCCGGGAATCTCAC 1273
Query 1146 CGGAATCGGAGAATCTCCCTTCACATCGATATGCCTCACGGATATTCATTTACAAACGC- 1204
||| |||||||||||||||||||| |||||||||||| |||||||||||||||||||||
Sbjct 1274 CGGGATCGGAGAATCTCCCTTCACGTCGATATGCCTCGCGGATATTCATTTACAAACGCG 1333
Query 1205 ATTCAGAT---TCTTGGATATGCTCCAACGTCTCTGGTTTCTCAGACGACGTATCGCCCG 1261
|| |||| |||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 1334 AT-CAGAAGAATCTTGGATATGCTCCAACGTCTCTGGTTTCTCAGACGACGTATCACCGG 1392
Query 1262 AGCCTTGTCAAGAACTCATGAGTTCTCCGTCGTCGTGCTTCGCCGGTGGTAGCATATACG 1321
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 1393 AGCCTTGTCAAGAACTCATGAGTTCTCCTTCGTCTTGCTTCGCCGGTGGTAGCATATACG 1452
Query 1322 -GCGGTGATGCGGCGGCTCAGTCGTACTACAGTTGGTAA 1359
| ||||||||| ||||||||||||| ||||||||||||
Sbjct 1453 AG-GGTGATGCGACGGCTCAGTCGTATTACAGTTGGTAA 1490
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66917326485
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5