BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg318453 Length=987 Score E Sequences producing significant alignments: (Bits) Value AT3G16880.1 | Symbols: | F-box and associated interaction doma... 760 0.0 AT3G25225.1 | Symbols: | pseudogene, hypothetical protein | ch... 84.2 2e-15 AT3G19470.1 | Symbols: | F-box and associated interaction doma... 75.0 1e-12 AT5G36200.1 | Symbols: | F-box and associated interaction doma... 71.3 2e-11 > AT3G16880.1 | Symbols: | F-box and associated interaction domains-containing protein | chr3:5766733-5767830 FORWARD LENGTH=1098 Length=1098 Score = 760 bits (411), Expect = 0.0 Identities = 648/757 (86%), Gaps = 38/757 (5%) Strand=Plus/Plus Query 175 CATCAATCTCCACAAGGAAGAAGACGTTATAA--A--T-TAAAGTGTAATGGTAAACTTA 229 |||||||||| ||||||||||||||||| || | | ||||||||||||||||| ||| Sbjct 213 CATCAATCTCAACAAGGAAGAAGACGTT-GAACCATCTATAAAGTGTAATGGTAAAATTA 271 Query 230 TTAACCTAACCGATGTGTCTCAAGTCTTTCATTGCGGTGGTTTGGTATGCATCACAAATG 289 |||||| || || | ||| || ||||| |||||||||||||||||||||||||||||| Sbjct 272 TTAACCCAATCGGTATGTGTCGAGTCTATCATTGCGGTGGTTTGGTATGCATCACAAAAA 331 Query 290 GCTTCTCTAACACTAGGGATGTGCTTTGGAATCCGTA-TTGGGGCCAAACTCGGTGGATC 348 ||||| ||||||||| |||||| ||||||||||||| |||||| ||||||||||||||| Sbjct 332 GCTTCAGTAACACTAGAGATGTGGTTTGGAATCCGTATTTGGGG-CAAACTCGGTGGATC 390 Query 349 GAAGCTAGAAGTCGTCACGCATATATATATGCTATTGGATACGAGACGAAAAAATCCTGC 408 || ||||||| | |||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 391 AAACCTAGAAGCCATCACGCATATATATATGCTATTGGATACGAGACGAAAAAATCGTGC 450 Query 409 CGCAGCTACAAAATTGTGACTTCTG--CT-AACTAT-TA--TATTGATGATAAACGTGTT 462 ||||||||||||||| ||| ||||| | || ||| || |||||||||| |||||||| Sbjct 451 CGCAGCTACAAAATTTTGAGTTCTGAACACAATTATATAAATATTGATGATGAACGTGTT 510 Query 463 GGCTACGAAATCTATGAGTTAGATTCTAATTCATGGAGGGTTCTTGATCTCAATTCCGAT 522 | ||||||||||||||||||||| |||||||||||||||| ||||||| |||||||| || Sbjct 511 GACTACGAAATCTATGAGTTAGACTCTAATTCATGGAGGGCTCTTGATGTCAATTCCAAT 570 Query 523 TGGGCGACAGCATTTTATAAAATGGAAGTCTCTGT-AAAGGAAATTCTTATACGTATACT 581 ||||||||||| |||||||||||||| |||||||| |||||||||||||||||||||||| Sbjct 571 TGGGCGACAGCCTTTTATAAAATGGATGTCTCTGTGAAAGGAAATTCTTATACGTATACT 630 Query 582 CGAGCAGGAGGTAGGGGTGAATTCTTGCTTTGTTTTGATTTTACAACAGAGGGATTTAGA 641 || | ||||||||| |||||| ||| ||||||||||||||||||| ||||| || Sbjct 631 -GATTA-----TAGGGGTGACTTCTTGATTTCTTTTGATTTTACAACAGAGAGATTTGGA 684 Query 642 CCGGCTCTGCCTCTGCCATTCCACTCTCATCGTCAAGATATTGTGGCTCTCTCTAGTGTT 701 ||| ||||||||||||| |||||||||| | || ||||||||||||||||||||||||| Sbjct 685 CCGACTCTGCCTCTGCCGTTCCACTCTCGTTGTGGAGATATTGTGGCTCTCTCTAGTGTT 744 Query 702 AGAGATGAGCAACTTGCAGTGTTA-TATCAGCGATATGATACATTACAT-ATGGAGATAT 759 ||||| ||| |||||||||||||| | ||| || | ||| || | | |||||||||| Sbjct 745 AGAGAAGAGAAACTTGCAGTGTTACT-TCACCGCTGCAATATATCA-AGGATGGAGATAT 802 Query 760 GGATTACTACCCA-AT-GA---------TGTCTCGTGGAGAAAGTTGTTATTAGCAGTGG 808 ||||||||| | | || || ||| |||||| |||||||||| ||| |||||| Sbjct 803 GGATTACTAACAAGATTGAGCCCAACAATGTGTCGTGGGGAAAGTTGTTCTTAACAGTGG 862 Query 809 ACATGAAACCACTCACTGTTTGCT-ATGGAAATTTCTTCGTTGACGAGGAGAAGAAAGTC 867 ||||||||||||||| | || | | |||||| ||||||| ||||||||||||||||||| Sbjct 863 ACATGAAACCACTCATTATT-GATGATGGAATTTTCTTCATTGACGAGGAGAAGAAAGTA 921 Query 868 GCTGTGGTTTTTGATAAGGACAAAGAGATAAGACACC 904 | ||||||||||||||||||||||||||| ||| ||| Sbjct 922 GTTGTGGTTTTTGATAAGGACAAAGAGATGAGAAACC 958 Score = 200 bits (108), Expect = 2e-50 Identities = 155/177 (88%), Gaps = 6/177 (3%) Strand=Plus/Plus Query 1 ATGACGATGATGTCCAATCTTCC-AAGGGATTTGTTAGAGGAGATACTCTCTAG-AGCTC 58 ||||| | ||||||||| ||||| || |||||||| ||||||||||||||||| || || Sbjct 1 ATGACAAAGATGTCCAAACTTCCGAA-TGATTTGTTGGAGGAGATACTCTCTAGAAG-TC 58 Query 59 CAAC-GGATTCTATGAGAGCAGTACGATTGACTTGCAAAAAGTGGAACACTTTAGCCGAG 117 | || | |||||||||||||| ||||||||||||||||||||||||||||||||||| | Sbjct 59 C-ACTGTATTCTATGAGAGCAATACGATTGACTTGCAAAAAGTGGAACACTTTAGCCAAA 117 Query 118 GAAGAAAGCTTTAGAAAGAAACAACTCCTTCTAGCAAAAGCTGCTAAAGAATTTATG 174 ||||||||||||| |||||| |||||| ||| | |||||||||| || ||||||||| Sbjct 118 GAAGAAAGCTTTACAAAGAAGCAACTCGTTCAAACAAAAGCTGCCAAGGAATTTATG 174 > AT3G25225.1 | Symbols: | pseudogene, hypothetical protein | chr3:9184970-9186171 FORWARD LENGTH=1202 Length=1202 Score = 84.2 bits (45), Expect = 2e-15 Identities = 57/62 (92%), Gaps = 3/62 (5%) Strand=Plus/Plus Query 840 TTTCTTCGTTGACGAGGAGAAGAAAGTCGCTGTGGTTTTTGATAAGGAC-A-AAGAGATA 897 ||||||| ||||||||||||||||||||||||||||||||||||| ||| | || ||||| Sbjct 1001 TTTCTTCATTGACGAGGAGAAGAAAGTCGCTGTGGTTTTTGATAAAGACTACAA-AGATA 1059 Query 898 AG 899 || Sbjct 1060 AG 1061 > AT3G19470.1 | Symbols: | F-box and associated interaction domains-containing protein | chr3:6749524-6751014 FORWARD LENGTH=1388 Length=1388 Score = 75.0 bits (40), Expect = 1e-12 Identities = 46/49 (94%), Gaps = 0/49 (0%) Strand=Plus/Plus Query 840 TTTCTTCGTTGACGAGGAGAAGAAAGTCGCTGTGGTTTTTGATAAGGAC 888 ||||||| | ||||||||||||||||||||||||||||||||||| ||| Sbjct 1105 TTTCTTCATCGACGAGGAGAAGAAAGTCGCTGTGGTTTTTGATAAAGAC 1153 > AT5G36200.1 | Symbols: | F-box and associated interaction domains-containing protein | chr5:14244106-14246296 REVERSE LENGTH=1416 Length=1416 Score = 71.3 bits (38), Expect = 2e-11 Identities = 40/41 (98%), Gaps = 0/41 (0%) Strand=Plus/Plus Query 923 TTGGGTGCTCTTATGTTCCAAGTTCAGTGCAAATCAAGCAA 963 ||| ||||||||||||||||||||||||||||||||||||| Sbjct 1130 TTGTGTGCTCTTATGTTCCAAGTTCAGTGCAAATCAAGCAA 1170 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 48325249414 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5