BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg318453
Length=987
Score E
Sequences producing significant alignments: (Bits) Value
AT3G16880.1 | Symbols: | F-box and associated interaction doma... 760 0.0
AT3G25225.1 | Symbols: | pseudogene, hypothetical protein | ch... 84.2 2e-15
AT3G19470.1 | Symbols: | F-box and associated interaction doma... 75.0 1e-12
AT5G36200.1 | Symbols: | F-box and associated interaction doma... 71.3 2e-11
> AT3G16880.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr3:5766733-5767830 FORWARD LENGTH=1098
Length=1098
Score = 760 bits (411), Expect = 0.0
Identities = 648/757 (86%), Gaps = 38/757 (5%)
Strand=Plus/Plus
Query 175 CATCAATCTCCACAAGGAAGAAGACGTTATAA--A--T-TAAAGTGTAATGGTAAACTTA 229
|||||||||| ||||||||||||||||| || | | ||||||||||||||||| |||
Sbjct 213 CATCAATCTCAACAAGGAAGAAGACGTT-GAACCATCTATAAAGTGTAATGGTAAAATTA 271
Query 230 TTAACCTAACCGATGTGTCTCAAGTCTTTCATTGCGGTGGTTTGGTATGCATCACAAATG 289
|||||| || || | ||| || ||||| ||||||||||||||||||||||||||||||
Sbjct 272 TTAACCCAATCGGTATGTGTCGAGTCTATCATTGCGGTGGTTTGGTATGCATCACAAAAA 331
Query 290 GCTTCTCTAACACTAGGGATGTGCTTTGGAATCCGTA-TTGGGGCCAAACTCGGTGGATC 348
||||| ||||||||| |||||| ||||||||||||| |||||| |||||||||||||||
Sbjct 332 GCTTCAGTAACACTAGAGATGTGGTTTGGAATCCGTATTTGGGG-CAAACTCGGTGGATC 390
Query 349 GAAGCTAGAAGTCGTCACGCATATATATATGCTATTGGATACGAGACGAAAAAATCCTGC 408
|| ||||||| | |||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 391 AAACCTAGAAGCCATCACGCATATATATATGCTATTGGATACGAGACGAAAAAATCGTGC 450
Query 409 CGCAGCTACAAAATTGTGACTTCTG--CT-AACTAT-TA--TATTGATGATAAACGTGTT 462
||||||||||||||| ||| ||||| | || ||| || |||||||||| ||||||||
Sbjct 451 CGCAGCTACAAAATTTTGAGTTCTGAACACAATTATATAAATATTGATGATGAACGTGTT 510
Query 463 GGCTACGAAATCTATGAGTTAGATTCTAATTCATGGAGGGTTCTTGATCTCAATTCCGAT 522
| ||||||||||||||||||||| |||||||||||||||| ||||||| |||||||| ||
Sbjct 511 GACTACGAAATCTATGAGTTAGACTCTAATTCATGGAGGGCTCTTGATGTCAATTCCAAT 570
Query 523 TGGGCGACAGCATTTTATAAAATGGAAGTCTCTGT-AAAGGAAATTCTTATACGTATACT 581
||||||||||| |||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 571 TGGGCGACAGCCTTTTATAAAATGGATGTCTCTGTGAAAGGAAATTCTTATACGTATACT 630
Query 582 CGAGCAGGAGGTAGGGGTGAATTCTTGCTTTGTTTTGATTTTACAACAGAGGGATTTAGA 641
|| | ||||||||| |||||| ||| ||||||||||||||||||| ||||| ||
Sbjct 631 -GATTA-----TAGGGGTGACTTCTTGATTTCTTTTGATTTTACAACAGAGAGATTTGGA 684
Query 642 CCGGCTCTGCCTCTGCCATTCCACTCTCATCGTCAAGATATTGTGGCTCTCTCTAGTGTT 701
||| ||||||||||||| |||||||||| | || |||||||||||||||||||||||||
Sbjct 685 CCGACTCTGCCTCTGCCGTTCCACTCTCGTTGTGGAGATATTGTGGCTCTCTCTAGTGTT 744
Query 702 AGAGATGAGCAACTTGCAGTGTTA-TATCAGCGATATGATACATTACAT-ATGGAGATAT 759
||||| ||| |||||||||||||| | ||| || | ||| || | | ||||||||||
Sbjct 745 AGAGAAGAGAAACTTGCAGTGTTACT-TCACCGCTGCAATATATCA-AGGATGGAGATAT 802
Query 760 GGATTACTACCCA-AT-GA---------TGTCTCGTGGAGAAAGTTGTTATTAGCAGTGG 808
||||||||| | | || || ||| |||||| |||||||||| ||| ||||||
Sbjct 803 GGATTACTAACAAGATTGAGCCCAACAATGTGTCGTGGGGAAAGTTGTTCTTAACAGTGG 862
Query 809 ACATGAAACCACTCACTGTTTGCT-ATGGAAATTTCTTCGTTGACGAGGAGAAGAAAGTC 867
||||||||||||||| | || | | |||||| ||||||| |||||||||||||||||||
Sbjct 863 ACATGAAACCACTCATTATT-GATGATGGAATTTTCTTCATTGACGAGGAGAAGAAAGTA 921
Query 868 GCTGTGGTTTTTGATAAGGACAAAGAGATAAGACACC 904
| ||||||||||||||||||||||||||| ||| |||
Sbjct 922 GTTGTGGTTTTTGATAAGGACAAAGAGATGAGAAACC 958
Score = 200 bits (108), Expect = 2e-50
Identities = 155/177 (88%), Gaps = 6/177 (3%)
Strand=Plus/Plus
Query 1 ATGACGATGATGTCCAATCTTCC-AAGGGATTTGTTAGAGGAGATACTCTCTAG-AGCTC 58
||||| | ||||||||| ||||| || |||||||| ||||||||||||||||| || ||
Sbjct 1 ATGACAAAGATGTCCAAACTTCCGAA-TGATTTGTTGGAGGAGATACTCTCTAGAAG-TC 58
Query 59 CAAC-GGATTCTATGAGAGCAGTACGATTGACTTGCAAAAAGTGGAACACTTTAGCCGAG 117
| || | |||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 59 C-ACTGTATTCTATGAGAGCAATACGATTGACTTGCAAAAAGTGGAACACTTTAGCCAAA 117
Query 118 GAAGAAAGCTTTAGAAAGAAACAACTCCTTCTAGCAAAAGCTGCTAAAGAATTTATG 174
||||||||||||| |||||| |||||| ||| | |||||||||| || |||||||||
Sbjct 118 GAAGAAAGCTTTACAAAGAAGCAACTCGTTCAAACAAAAGCTGCCAAGGAATTTATG 174
> AT3G25225.1 | Symbols: | pseudogene, hypothetical protein |
chr3:9184970-9186171 FORWARD LENGTH=1202
Length=1202
Score = 84.2 bits (45), Expect = 2e-15
Identities = 57/62 (92%), Gaps = 3/62 (5%)
Strand=Plus/Plus
Query 840 TTTCTTCGTTGACGAGGAGAAGAAAGTCGCTGTGGTTTTTGATAAGGAC-A-AAGAGATA 897
||||||| ||||||||||||||||||||||||||||||||||||| ||| | || |||||
Sbjct 1001 TTTCTTCATTGACGAGGAGAAGAAAGTCGCTGTGGTTTTTGATAAAGACTACAA-AGATA 1059
Query 898 AG 899
||
Sbjct 1060 AG 1061
> AT3G19470.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr3:6749524-6751014 FORWARD LENGTH=1388
Length=1388
Score = 75.0 bits (40), Expect = 1e-12
Identities = 46/49 (94%), Gaps = 0/49 (0%)
Strand=Plus/Plus
Query 840 TTTCTTCGTTGACGAGGAGAAGAAAGTCGCTGTGGTTTTTGATAAGGAC 888
||||||| | ||||||||||||||||||||||||||||||||||| |||
Sbjct 1105 TTTCTTCATCGACGAGGAGAAGAAAGTCGCTGTGGTTTTTGATAAAGAC 1153
> AT5G36200.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr5:14244106-14246296 REVERSE LENGTH=1416
Length=1416
Score = 71.3 bits (38), Expect = 2e-11
Identities = 40/41 (98%), Gaps = 0/41 (0%)
Strand=Plus/Plus
Query 923 TTGGGTGCTCTTATGTTCCAAGTTCAGTGCAAATCAAGCAA 963
||| |||||||||||||||||||||||||||||||||||||
Sbjct 1130 TTGTGTGCTCTTATGTTCCAAGTTCAGTGCAAATCAAGCAA 1170
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48325249414
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5