BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg318457
Length=1002
Score E
Sequences producing significant alignments: (Bits) Value
AT3G16920.1 | Symbols: CTL2, ATCTL2 | chitinase-like protein 2 ... 1524 0.0
> AT3G16920.1 | Symbols: CTL2, ATCTL2 | chitinase-like protein
2 | chr3:5776486-5777889 REVERSE LENGTH=1227
Length=1227
Score = 1524 bits (825), Expect = 0.0
Identities = 943/1002 (94%), Gaps = 0/1002 (0%)
Strand=Plus/Plus
Query 1 ATGGTTTCAAAACCGCTATTCTCCCTGCTGCTTCTCACGGTGGCATTAGTCGTGTTTCAA 60
|||||||| ||||||||||||||||| ||||||||||||| ||||| || |||||||||
Sbjct 49 ATGGTTTCGAAACCGCTATTCTCCCTATTGCTTCTCACGGTTGCATTGGTTGTGTTTCAA 108
Query 61 ACCCGATCCCTAGTCAACGCTGAAGATTCCGAGCCTTCGAGTTCCGCTAGAAAGCCTCTG 120
||| || |||| |||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct 109 ACCGGAACCCTTGTCAACGCTGAAGATTCCGAGCCTTCGAGTTCAACGAGAAAGCCTCTG 168
Query 121 GTGAAGATCGTCAAGGGGAAAAAGTTATGCGACAAAGGATGGGAATGTAAAGGATGGTCC 180
|||||||| || || || ||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 169 GTGAAGATTGTGAAAGGTAAAAAATTATGCGACAAAGGATGGGAATGCAAAGGATGGTCC 228
Query 181 GAGTATTGTTGCAACCATACAATCTCCGAtttttttGAGACATATCAATTCGAGAATCTA 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 229 GAGTATTGTTGCAACCATACAATCTCCGATTTTTTTGAGACATATCAATTCGAGAATCTA 288
Query 241 TTCTCTAAGCGTAACAGTCCCGTGGCTCACGCCGTCGGCTTTTGGGATTACCGATCATTC 300
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 289 TTCTCTAAGCGTAACAGTCCAGTGGCTCACGCCGTCGGCTTTTGGGATTACCGATCATTC 348
Query 301 ATCACTGCTGCTGCCGAGTATCAACCTCTTGGGTTCGGTACTGCTGGTGAGAAACTTCAA 360
|| ||||| ||||||||||| || |||||||| |||||||||||||||||||||||||||
Sbjct 349 ATTACTGCGGCTGCCGAGTACCAGCCTCTTGGTTTCGGTACTGCTGGTGAGAAACTTCAA 408
Query 361 GGCATGAAGGAAGTCGCTGCGTTTCTTGGCCACGTTGGAAGCAAAACCTCATGCGGGTAC 420
|| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 409 GGGATGAAGGAAGTCGCTGCGTTTCTTGGCCACGTTGGGAGCAAAACCTCATGCGGGTAC 468
Query 421 GGGGTTGCGACGGGTGGACCATTAGCTTGGGGATTGTGTTACAACAAGGAGATGAGTCCT 480
|||||||| || || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 469 GGGGTTGCAACAGGCGGACCATTAGCTTGGGGATTGTGTTACAACAAGGAGATGAGTCCT 528
Query 481 GATCAACTCTATTGCGATGATTACTACAAATTGACGTATCCTTGTACTCCTGGTGTCTCG 540
||||| || |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 529 GATCAGCTTTATTGCGATGATTACTACAAATTGACATATCCTTGTACTCCTGGTGTCTCG 588
Query 541 TACCACGGTAGAGGAGCTTTACCGGTTTACTGGAATTACAATTATGGTCAAACCGGGGAG 600
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 589 TACCACGGTCGAGGAGCTTTACCGGTTTACTGGAATTACAATTATGGTCAAACCGGGGAG 648
Query 601 GCTTTGAAAGTGGATCTACTGAGTCATCCAGAGTATCTTGAGAACAATGCTACGTTGGCG 660
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 649 GCTTTGAAAGTGGATCTACTGAGTCATCCAGAGTATCTCGAGAACAATGCTACGTTAGCG 708
Query 661 TTTCAGGCAGCGATTTGGCGATGGATGACGCCACCAAAGAAGCATTTGCCATCGGCGCAC 720
||||| || ||||||||||| |||||||||||||| ||||||||||| || |||||||||
Sbjct 709 TTTCAAGCGGCGATTTGGCGGTGGATGACGCCACCGAAGAAGCATTTACCGTCGGCGCAC 768
Query 721 GATGTTTTCGTTGGAAAATGGAAGCCAACGAAGAATGACACAGCGGCGAAACGTACTCCA 780
||||||||||| ||||||||||||||||| ||||||||||| || || ||||| |||||
Sbjct 769 GATGTTTTCGTCGGAAAATGGAAGCCAACAAAGAATGACACTGCTGCAAAACGAACTCCG 828
Query 781 GGATTCGGAGCCACCATAAACGTTCTTTACGGCGATCAAATCTGCAACAGCGGATTCGAT 840
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 829 GGGTTTGGAGCCACCATAAACGTTCTTTACGGCGATCAAATCTGCAACAGCGGATTCGAT 888
Query 841 AACGATGAGATGAACAACATCGTTTCTCATTATTTGTATTATCTAGATCTGATAGGTGTT 900
|||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 889 AACGATGAGATGAACAACATTGTTTCTCATTATTTGTATTATCTTGATCTGATAGGTGTT 948
Query 901 GGACGAGAAGAAGCTGGTCCTCACGAGAAGCTATCGTGCGCGGATCAAGAACCTTTCTCT 960
|||||||||||||||||||||||||||||||| || ||||| |||||||||||||| |||
Sbjct 949 GGACGAGAAGAAGCTGGTCCTCACGAGAAGCTGTCATGCGCAGATCAAGAACCTTTTTCT 1008
Query 961 TCTTCTTCCTCTGCTCCTACAAGTTCTGGTTCCTCTTCTTGA 1002
||||| |||||||||||| | |||||||||||||||||||||
Sbjct 1009 TCTTCCTCCTCTGCTCCTCCGAGTTCTGGTTCCTCTTCTTGA 1050
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49078761619
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5