BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg318460

Length=351
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G16960.1 | Symbols:  | FUNCTIONS IN: molecular_function unkn...   446    8e-125


> AT3G16960.1 | Symbols:  | FUNCTIONS IN: molecular_function unknown; 
INVOLVED IN: biological_process unknown; LOCATED IN: 
endomembrane system; CONTAINS InterPro DOMAIN/s: Plant self-incompatibility 
S1 (InterPro:IPR010264); BEST Arabidopsis thaliana 
protein match is: Plant self-incompatibility protein 
S1 family (TAIR:AT3G16970.1); Has 22 Blast hits to 22 proteins 
in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi 
- 0; Plants - 22; Viruses - 0; Other Eukaryotes - 0 (source: 
NCBI BLink). | chr3:5791812-5792264 REVERSE LENGTH=345
Length=345

 Score =  446 bits (241),  Expect = 8e-125
 Identities = 306/337 (91%), Gaps = 5/337 (1%)
 Strand=Plus/Plus

Query  1    ATGGGTTCTCTAGCGGAACTTGTAGCTCTCATAATCATAATGTGTACAAGTGTAACAATG  60
            |||||| ||||||| ||||||||||||||||| ||| | |||||| ||||||||||||||
Sbjct  1    ATGGGTGCTCTAGCAGAACTTGTAGCTCTCATTATCGTTATGTGTGCAAGTGTAACAATG  60

Query  61   TCCCTCGCTCAAAACCCCATGGCTTCACCA--AAGA-TTGAGAACCCAAATACAACAGTG  117
            ||||||||||||||||||||||||||||||  |||  |||||||||||||||||||||||
Sbjct  61   TCCCTCGCTCAAAACCCCATGGCTTCACCACCAAGTGTTGAGAACCCAAATACAACAGTG  120

Query  118  GTGAT-CTATAACGATCTTGAAGGTTCTTGGCCAATGTCATACCATTGTGTGTCAAGAGA  176
            ||||| | |||||| ||||  ||||| |||||||||| ||||||||||||  |||| |||
Sbjct  121  GTGATAC-ATAACGCTCTTTCAGGTTATTGGCCAATGGCATACCATTGTGCATCAAAAGA  179

Query  177  CGTTGATTTTGGAATTCGGCGTATGCCATCAGAAAGAGACCAAGAATCTGCAGTGTTTGG  236
            ||||||||||||| | || ||||||| | | ||||||||||||||||||||| |||||||
Sbjct  180  CGTTGATTTTGGACTCCGACGTATGCTAGCTGAAAGAGACCAAGAATCTGCAATGTTTGG  239

Query  237  ATGCAAAAGATGCGAATGGAAGATACGCGAAGATGGACCTTGCAAACTTAACaaaaaaaC  296
            ||||||||||||||||||||||||||| ||||| |||||||||||||| |||||||| ||
Sbjct  240  ATGCAAAAGATGCGAATGGAAGATACGTGAAGAAGGACCTTGCAAACTGAACAAAAAGAC  299

Query  297  TGGAATGTTTGATCTTTGTCCTCCTTGGGATTCTCAA  333
            |||||||||||||||||||||||||||||||||||||
Sbjct  300  TGGAATGTTTGATCTTTGTCCTCCTTGGGATTCTCAA  336



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16437553923


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5