BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg318461

Length=432
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G16970.1 | Symbols:  | Plant self-incompatibility protein S1...   529    1e-149


> AT3G16970.1 | Symbols:  | Plant self-incompatibility protein 
S1 family | chr3:5793668-5794090 REVERSE LENGTH=423
Length=423

 Score =  529 bits (286),  Expect = 1e-149
 Identities = 374/415 (90%), Gaps = 12/415 (3%)
 Strand=Plus/Plus

Query  10   TGTATTAATGTAACAATATCTCGAGCCCAAAATGAT---AT-CAT-C-AGTCCATCATCC  63
            ||| ||| ||||||||||||||||| |||||| |||   || | | | | |||| |||||
Sbjct  4    TGTGTTAGTGTAACAATATCTCGAGGCCAAAAGGATAGCATCCCTCCAACTCCAACATCC  63

Query  64   GGTTTCTACAACTCAAGAACAACAGTGGTGATATATAATGATCTTGGTGGTCATCTGCCA  123
            |||||| ||||| |||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct  64   GGTTTCGACAACCCAAGAACAACAGTGGTGATATACAATGATCTTGGGGGTCATCTGCCA  123

Query  124  TTGCGATATCATTGTAAATCAAAACAA-GATGATCTTGGAGACCGGACTATGGCGGTAAA  182
            ||| |||| ||||||||||||||| || ||||||||||||||||||| ||||||||||||
Sbjct  124  TTGAGATACCATTGTAAATCAAAA-AATGATGATCTTGGAGACCGGAATATGGCGGTAAA  182

Query  183  TGGAACGTGGTCATTTGAATTTAGACCCAGTATTTTTGGAAGAACTTTAtttttttGCGG  242
            |||||| |||||||||||||||||||| ||| |||||||| ||||||| |||||||||||
Sbjct  183  TGGAACTTGGTCATTTGAATTTAGACCGAGTGTTTTTGGAGGAACTTTGTTTTTTTGCGG  242

Query  243  TTTTAGATGGGATAATGAGTTGCATTGGTTCGATATCTACACACAGAAG-AGAGACAAAG  301
            ||||| ||||||||| ||||||||||||||||||||||||| |||| || ||||||| ||
Sbjct  243  TTTTATATGGGATAAGGAGTTGCATTGGTTCGATATCTACAAACAG-AGTAGAGACAGAG  301

Query  302  AATTCACCAAGTTTGGATGTAGAAGATGCGAATGGAAGATACACAAAGATGGACCTTGCA  361
            ||||| || ||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct  302  AATTCGCCGAGTTTGGATGTAGAAGATGCGAATGGAAGATACGCAAAGATGGACCTTGCA  361

Query  362  AACTT-AACAAAAACACTAAAATGTTTGATGTTTGTCTTCCTTGGAATTCTCAAT  415
            || || ||||| |||| ||| ||||||||||||||||||||||||||||||||||
Sbjct  362  AA-TTGAACAAGAACAGTAATATGTTTGATGTTTGTCTTCCTTGGAATTCTCAAT  415



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20509241592


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5