BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg318465
Length=909
Score E
Sequences producing significant alignments: (Bits) Value
AT3G17010.1 | Symbols: | AP2/B3-like transcriptional factor fa... 1214 0.0
> AT3G17010.1 | Symbols: | AP2/B3-like transcriptional factor
family protein | chr3:5800460-5802468 FORWARD LENGTH=1074
Length=1074
Score = 1214 bits (657), Expect = 0.0
Identities = 837/921 (91%), Gaps = 24/921 (3%)
Strand=Plus/Plus
Query 1 ATGGGTAGGAGAAGGAACATTGGTTTTGATAAAATTATAGAAGAACGGAAGATGTTGAGC 60
||||||| ||| || ||||| | ||||||| |||| |||||||||| |||||||||||
Sbjct 1 ATGGGTAAGAGTAGTAACATAGTTTTTGATCGGATTAAAGAAGAACGGCAGATGTTGAGC 60
Query 61 TTTTTCAAGATTTTTCAGAGTTCAGATCTATCTTCTGAATGCATGAGAGCGTTTTCTTAC 120
|||||||||||||||||||| |||||||||| ||||| |||||||||||| || |||||
Sbjct 61 TTTTTCAAGATTTTTCAGAGGGCAGATCTATCCTCTGACTGCATGAGAGCGCTTCCTTAC 120
Query 121 AGCTTCATAAGTAGACTCTCAAG-GAAAGACTTCTCTTACAAGATGGTGATAAGAGCGCA 179
||||||||||| | | |||| | |||||||||||||||||||||||| |||||||||||
Sbjct 121 AGCTTCATAAGCAAAGTCTC-TGAGAAAGACTTCTCTTACAAGATGGTTATAAGAGCGCA 179
Query 180 ATGGGGAAAGACATGGCATCTAGAAATCTCCAAGAACCCGAGATACTACTACATTGAGAG 239
|||||||||||||||| || ||||| ||||||||||||||| |||||||||||||||||
Sbjct 180 ATGGGGAAAGACATGGGATGTAGAAGTCTCCAAGAACCCGACATACTACTACATTGAGAC 239
Query 240 GCGTGGATGGGATCAGTTTGTGAGTGACAATGCTTTAGGAGAAAACGAGTTCATTACCTT 299
|||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 240 GCGTGGATGGGATCTGTTTGTGAGTGACAATGCTTTAGGACAAAACGAGTTCATTACCTT 299
Query 300 CACTCACAGAGGAAATATGGTCTTTCATGTCAACATCTACGAGCAGAATGG-TGTAGAGA 358
||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 300 CACTCACAGAGGAAATATGGTCTTTCATGTCAACATCTACGAGCAGAATGGCT-TAGAGA 358
Query 359 TGC-TCACACCTCGAAAATTCCAGACAATGGATTCTTCTAGTGGGATCAAGAAAGAAGGA 417
||| | | |||||||||||||||||| |||| | |||||||||||||||||||||||| |
Sbjct 359 TGCGTAA-ACCTCGAAAATTCCAGACGATGGGTCCTTCTAGTGGGATCAAGAAAGAAGAA 417
Query 418 G-AGAGTA--GCTTCAAAGATGTGAAGAAGGAAGAGGAAACTGATGAATC-CGCGGGACG 473
| |||| | || ||| ||||||||||||||||||||||| ||||||||| | |||||||
Sbjct 418 GGAGAGAACAGCCTCATAGATGTGAAGAAGGAAGAGGAAAGTGATGAATCTC-CGGGACG 476
Query 474 AGCTGAGTTCGTAGTTagaaagaggaagactgaggaatccaaatcatccaagaagaagat 533
|||||||||| |||||||||||| |||||||||||| ||||||||||| |||||||||||
Sbjct 477 AGCTGAGTTCCTAGTTAGAAAGAAGAAGACTGAGGATTCCAAATCATCAAAGAAGAAGAT 536
Query 534 gga-gagaaagaaaaagaaga-gcaagagcaagagtaagagcaaag-aagTGCTGAATGG 590
| | |||||| ||| ||||| | ||||||||||| |||||||| | |||||||| ||||
Sbjct 537 G-ACGAGAAACAAAGTGAAGAAG-AAGAGCAAGAGCAAGAGCAA-GCAAGTGCTGGATGG 593
Query 591 TGTTCCAGAATTCAAAATCACCATAAGGAAATCATACCTCAAGTTCCTGGCAATCCCAAA 650
||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 594 TGTTCCAGAGTTCAAAATCACCATAAGGAAATCATACCTCAAGTTCCTGGCAATACCAAA 653
Query 651 ACATTTTGTGGATGATCATATCCCGAATAAGTCTAAGTTTTTCACGGTTCGTCACCCGAA 710
||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 654 ACATTTTGTGGATGATCATATCCCGAATAAGTCTAAGATTTTCACGATTCGTCACCCGAA 713
Query 711 TGGGATTGGTTCATGGAAGGTGCTCTGCTTGGTGAGGGAGATTAGGACAATCTTCTCAGG 770
||| | ||||||||||||||||| |||||||||||||||||| ||||||||||||||||
Sbjct 714 TGG--T-GGTTCATGGAAGGTGCTTTGCTTGGTGAGGGAGATTCGGACAATCTTCTCAGG 770
Query 771 TGGATACTCAAAATTGGCAAGAGAGTATCC-TTTAATGGTTGGTGACAAATGCACCTTCA 829
||||||||| |||||||||||||||| ||| ||| ||||||||||||||||||||||| |
Sbjct 771 TGGATACTCGAAATTGGCAAGAGAGT-TCCCTTTGATGGTTGGTGACAAATGCACCTTTA 829
Query 830 AGCTCATCAAACCCTTCGAGTTTGTCCTTCTTACCTCCAAGAAGACCAGAGATGA-GATT 888
|||| |||||||||||||||||||||||||||||||||||||||| |||||| || |||
Sbjct 830 AGCTTATCAAACCCTTCGAGTTTGTCCTTCTTACCTCCAAGAAGAACAGAGA-GAAGATG 888
Query 889 GATCACTACATGATCGATTGA 909
||||| | |||||||||||||
Sbjct 889 GATCAGTGCATGATCGATTGA 909
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44406985948
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5