BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg318477

Length=339
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G17140.1 | Symbols:  | Plant invertase/pectin methylesterase...   527    3e-149


> AT3G17140.1 | Symbols:  | Plant invertase/pectin methylesterase 
inhibitor superfamily protein | chr3:5846002-5846589 REVERSE 
LENGTH=339
Length=339

 Score =  527 bits (285),  Expect = 3e-149
 Identities = 321/339 (95%), Gaps = 0/339 (0%)
 Strand=Plus/Plus

Query  1    ATGGCTATGATGGTGGGAGTTGCGATGGGAAATATTGCGCTTGGGGCTGAAACGCTCGGG  60
            ||||||||| ||||||||||||||||||||||||||||||||||||| |||||| |||||
Sbjct  1    ATGGCTATGGTGGTGGGAGTTGCGATGGGAAATATTGCGCTTGGGGCCGAAACGGTCGGG  60

Query  61   CAGATCAATGAGGCGTACAAGACGAAACCTATGCTGAAAAAGCCATTAGACGAGTGTAGT  120
            |||||||| ||||| ||||| || ||||| ||||||||||||||||||||||||||||||
Sbjct  61   CAGATCAACGAGGCCTACAAAACAAAACCAATGCTGAAAAAGCCATTAGACGAGTGTAGT  120

Query  121  TTGAGATACAAAACGATCGTAGACGTTGACGTCCACACTGCCATTATAGCTGTCAAAGGA  180
             ||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct  121  ATGAGATACAAAACGATCGTAGACGTTGACGTCCACACTGCCATTATATCTATCAAAGGA  180

Query  181  AACCCTAAGTTCGCTGAAGGGGCTATTGTCGACGCCGGCGTGGAAGCTTCCATTTGCGAA  240
            |||||||||||||||||||||||| |||| ||||||||||||||||||||||| ||||||
Sbjct  181  AACCCTAAGTTCGCTGAAGGGGCTGTTGTTGACGCCGGCGTGGAAGCTTCCATATGCGAA  240

Query  241  GGAGGGTTTACCAAAGGCCAATCTACGTTGACCAGTTTGACTCAAAGAATGGAAAAGATT  300
            |||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||
Sbjct  241  GGAGGGTTTACCAAAGGCCAATCTCCGTTGACCAGTTTGACTCAGAGAATGGAAAAGATT  300

Query  301  TGCGATGTGACCAGAGCCATCGTCCGAATTTTGCTCTAA  339
            ||||||||||||||||||||| ||||||| |||||||||
Sbjct  301  TGCGATGTGACCAGAGCCATCATCCGAATGTTGCTCTAA  339



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15834340935


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5